EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000016198 (Gene tree)
Gene ID: 100029897
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 25726 bases
Position: chr1:500729292-500755017
Accession: 100029897
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000029058	PABP	PF00658.18	7e-24	1	1
ENSMODP00000029058	RRM_5	PF13893.6	3.8e-08	1	1
ENSMODP00000029058	RRM_1	PF00076.22	1e-88	1	4
ENSMODP00000029058	RRM_1	PF00076.22	1e-88	2	4
ENSMODP00000029058	RRM_1	PF00076.22	1e-88	3	4
ENSMODP00000029058	RRM_1	PF00076.22	1e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000030636	PABPC1L-201	2029	XM_007475822	ENSMODP00000029058	588 (aa)	XP_007475884	F6TY24

Gene Model

Click here to download ENSMODG00000016198's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03013	RNA transport	KEGG
mdo03015	mRNA surveillance pathway	KEGG
mdo03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000016198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000016198	PABPC1L	98	61.513	ENSMODG00000013156	-	93	61.252
ENSMODG00000016198	PABPC1L	98	66.184	ENSMODG00000012040	-	95	66.546
ENSMODG00000016198	PABPC1L	63	30.247	ENSMODG00000014720	HNRNPA0	67	30.247
ENSMODG00000016198	PABPC1L	68	36.145	ENSMODG00000003936	ELAVL2	85	36.145
ENSMODG00000016198	PABPC1L	99	70.310	ENSMODG00000006222	PABPC1	95	70.310
ENSMODG00000016198	PABPC1L	99	67.537	ENSMODG00000017105	-	95	67.863
ENSMODG00000016198	PABPC1L	67	38.202	ENSMODG00000005041	ELAVL1	78	38.202
ENSMODG00000016198	PABPC1L	53	36.047	ENSMODG00000019913	CELF1	74	36.047
ENSMODG00000016198	PABPC1L	50	65.306	ENSMODG00000019847	-	67	65.306
ENSMODG00000016198	PABPC1L	99	58.671	ENSMODG00000015024	-	95	58.671
ENSMODG00000016198	PABPC1L	65	59.055	ENSMODG00000018051	-	98	59.055
ENSMODG00000016198	PABPC1L	99	64.835	ENSMODG00000017657	-	96	64.835

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000016198	PABPC1L	99	79.500	ENSG00000101104	PABPC1L	98	87.963	Homo_sapiens
ENSMODG00000016198	PABPC1L	99	69.154	ENSAPOG00000010842	pabpc1l	94	68.601	Acanthochromis_polyacanthus
ENSMODG00000016198	PABPC1L	99	72.698	ENSAMEG00000004099	PABPC1L	95	72.431	Ailuropoda_melanoleuca
ENSMODG00000016198	PABPC1L	98	74.048	ENSACIG00000021004	-	96	74.048	Amphilophus_citrinellus
ENSMODG00000016198	PABPC1L	99	68.669	ENSAOCG00000006167	-	97	68.506	Amphiprion_ocellaris
ENSMODG00000016198	PABPC1L	99	73.460	ENSAPEG00000010558	-	97	79.812	Amphiprion_percula
ENSMODG00000016198	PABPC1L	99	71.096	ENSATEG00000007428	pabpc1l	97	71.096	Anabas_testudineus
ENSMODG00000016198	PABPC1L	98	76.949	ENSAPLG00000008415	PABPC1L	97	76.847	Anas_platyrhynchos
ENSMODG00000016198	PABPC1L	99	78.211	ENSACAG00000011841	PABPC1L	96	78.211	Anolis_carolinensis
ENSMODG00000016198	PABPC1L	99	78.500	ENSANAG00000026826	PABPC1L	97	78.500	Aotus_nancymaae
ENSMODG00000016198	PABPC1L	99	69.756	ENSACLG00000024791	pabpc1l	97	69.756	Astatotilapia_calliptera
ENSMODG00000016198	PABPC1L	99	72.403	ENSAMXG00000013552	pabpc1l	94	72.287	Astyanax_mexicanus
ENSMODG00000016198	PABPC1L	70	71.831	ENSBTAG00000016849	PABPC1L	86	71.831	Bos_taurus
ENSMODG00000016198	PABPC1L	61	94.643	ENSBTAG00000055300	-	100	94.643	Bos_taurus
ENSMODG00000016198	PABPC1L	99	78.667	ENSCJAG00000017628	PABPC1L	97	78.667	Callithrix_jacchus
ENSMODG00000016198	PABPC1L	62	78.161	ENSCJAG00000038506	-	100	78.161	Callithrix_jacchus
ENSMODG00000016198	PABPC1L	99	70.219	ENSCAFG00000009573	PABPC1L	95	69.887	Canis_familiaris
ENSMODG00000016198	PABPC1L	99	78.798	ENSCAFG00020013828	PABPC1L	94	78.694	Canis_lupus_dingo
ENSMODG00000016198	PABPC1L	99	78.956	ENSCHIG00000025759	PABPC1L	90	78.956	Capra_hircus
ENSMODG00000016198	PABPC1L	99	76.833	ENSTSYG00000006645	PABPC1L	97	76.833	Carlito_syrichta
ENSMODG00000016198	PABPC1L	98	70.301	ENSCAPG00000014519	PABPC1L	93	70.291	Cavia_aperea
ENSMODG00000016198	PABPC1L	99	73.798	ENSCPOG00000013633	PABPC1L	94	73.891	Cavia_porcellus
ENSMODG00000016198	PABPC1L	99	78.333	ENSCCAG00000023338	PABPC1L	97	78.667	Cebus_capucinus
ENSMODG00000016198	PABPC1L	99	79.633	ENSCATG00000034065	PABPC1L	97	79.800	Cercocebus_atys
ENSMODG00000016198	PABPC1L	99	73.090	ENSCLAG00000005298	PABPC1L	94	73.720	Chinchilla_lanigera
ENSMODG00000016198	PABPC1L	99	79.466	ENSCSAG00000014242	PABPC1L	97	79.633	Chlorocebus_sabaeus
ENSMODG00000016198	PABPC1L	56	81.061	ENSCPBG00000007810	-	81	81.061	Chrysemys_picta_bellii
ENSMODG00000016198	PABPC1L	76	85.682	ENSCPBG00000017755	-	99	85.682	Chrysemys_picta_bellii
ENSMODG00000016198	PABPC1L	98	48.682	ENSCING00000002796	-	91	48.109	Ciona_intestinalis
ENSMODG00000016198	PABPC1L	98	58.362	ENSCSAVG00000003102	-	100	83.562	Ciona_savignyi
ENSMODG00000016198	PABPC1L	99	59.052	ENSCSAVG00000004246	-	93	58.626	Ciona_savignyi
ENSMODG00000016198	PABPC1L	99	75.698	ENSCANG00000037530	PABPC1L	97	75.862	Colobus_angolensis_palliatus
ENSMODG00000016198	PABPC1L	96	70.052	ENSCGRG00001021938	Pabpc1l	97	70.530	Cricetulus_griseus_chok1gshd
ENSMODG00000016198	PABPC1L	96	70.052	ENSCGRG00000007946	Pabpc1l	97	70.530	Cricetulus_griseus_crigri
ENSMODG00000016198	PABPC1L	99	65.025	ENSCSEG00000021295	pabpc1l	96	65.025	Cynoglossus_semilaevis
ENSMODG00000016198	PABPC1L	99	70.066	ENSCVAG00000015943	-	99	88.550	Cyprinodon_variegatus
ENSMODG00000016198	PABPC1L	99	71.824	ENSDARG00000002597	pabpc1l	88	89.231	Danio_rerio
ENSMODG00000016198	PABPC1L	99	81.500	ENSDNOG00000048450	PABPC1L	97	81.500	Dasypus_novemcinctus
ENSMODG00000016198	PABPC1L	99	76.500	ENSDORG00000001067	Pabpc1l	94	76.501	Dipodomys_ordii
ENSMODG00000016198	PABPC1L	94	86.992	ENSETEG00000009969	PABPC1L	67	86.992	Echinops_telfairi
ENSMODG00000016198	PABPC1L	61	68.692	ENSEASG00005023407	-	86	68.692	Equus_asinus_asinus
ENSMODG00000016198	PABPC1L	62	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSMODG00000016198	PABPC1L	70	76.695	ENSECAG00000040139	-	81	76.371	Equus_caballus
ENSMODG00000016198	PABPC1L	99	74.833	ENSEEUG00000005978	PABPC1L	97	74.833	Erinaceus_europaeus
ENSMODG00000016198	PABPC1L	99	72.168	ENSELUG00000001811	pabpc1l	97	72.168	Esox_lucius
ENSMODG00000016198	PABPC1L	99	79.466	ENSFCAG00000011692	PABPC1L	94	79.381	Felis_catus
ENSMODG00000016198	PABPC1L	88	78.996	ENSFALG00000005372	PABPC1L	90	78.996	Ficedula_albicollis
ENSMODG00000016198	PABPC1L	99	73.613	ENSFDAG00000008291	PABPC1L	94	73.529	Fukomys_damarensis
ENSMODG00000016198	PABPC1L	99	70.328	ENSFHEG00000003398	pabpc1l	97	70.328	Fundulus_heteroclitus
ENSMODG00000016198	PABPC1L	99	71.901	ENSGMOG00000004437	pabpc1l	96	71.664	Gadus_morhua
ENSMODG00000016198	PABPC1L	98	69.326	ENSGALG00000004123	PABPC1L	98	86.683	Gallus_gallus
ENSMODG00000016198	PABPC1L	99	66.512	ENSGAFG00000021057	pabpc1l	97	66.512	Gambusia_affinis
ENSMODG00000016198	PABPC1L	99	69.318	ENSGACG00000002792	pabpc1l	97	69.318	Gasterosteus_aculeatus
ENSMODG00000016198	PABPC1L	99	80.619	ENSGAGG00000000589	PABPC1L	96	80.619	Gopherus_agassizii
ENSMODG00000016198	PABPC1L	99	79.500	ENSGGOG00000004584	PABPC1L	97	79.667	Gorilla_gorilla
ENSMODG00000016198	PABPC1L	99	69.593	ENSHBUG00000006134	pabpc1l	97	69.593	Haplochromis_burtoni
ENSMODG00000016198	PABPC1L	99	75.331	ENSHGLG00000008434	PABPC1L	94	75.298	Heterocephalus_glaber_female
ENSMODG00000016198	PABPC1L	99	75.331	ENSHGLG00100012151	PABPC1L	94	75.298	Heterocephalus_glaber_male
ENSMODG00000016198	PABPC1L	61	83.146	ENSHGLG00100019506	-	100	83.146	Heterocephalus_glaber_male
ENSMODG00000016198	PABPC1L	99	68.297	ENSHCOG00000009270	pabpc1l	97	68.297	Hippocampus_comes
ENSMODG00000016198	PABPC1L	99	74.351	ENSIPUG00000012602	pabpc1l	94	74.124	Ictalurus_punctatus
ENSMODG00000016198	PABPC1L	62	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSMODG00000016198	PABPC1L	62	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSMODG00000016198	PABPC1L	99	77.000	ENSSTOG00000003739	PABPC1L	97	77.000	Ictidomys_tridecemlineatus
ENSMODG00000016198	PABPC1L	95	61.448	ENSJJAG00000022406	Pabpc1l	96	59.500	Jaculus_jaculus
ENSMODG00000016198	PABPC1L	99	70.764	ENSKMAG00000016847	pabpc1l	97	70.764	Kryptolebias_marmoratus
ENSMODG00000016198	PABPC1L	99	69.732	ENSLBEG00000010084	pabpc1l	97	69.732	Labrus_bergylta
ENSMODG00000016198	PABPC1L	99	71.680	ENSLACG00000005762	PABPC1L	99	73.381	Latimeria_chalumnae
ENSMODG00000016198	PABPC1L	99	73.539	ENSLOCG00000007519	pabpc1l	96	73.539	Lepisosteus_oculatus
ENSMODG00000016198	PABPC1L	99	75.890	ENSLAFG00000003553	PABPC1L	95	75.874	Loxodonta_africana
ENSMODG00000016198	PABPC1L	99	79.967	ENSMFAG00000040365	PABPC1L	97	80.134	Macaca_fascicularis
ENSMODG00000016198	PABPC1L	99	77.907	ENSMNEG00000032298	PABPC1L	97	78.073	Macaca_nemestrina
ENSMODG00000016198	PABPC1L	99	79.633	ENSMLEG00000043139	PABPC1L	97	79.800	Mandrillus_leucophaeus
ENSMODG00000016198	PABPC1L	99	70.083	ENSMAMG00000011854	pabpc1l	94	69.898	Mastacembelus_armatus
ENSMODG00000016198	PABPC1L	99	69.756	ENSMZEG00005023713	pabpc1l	97	69.756	Maylandia_zebra
ENSMODG00000016198	PABPC1L	99	78.618	ENSMGAG00000003674	PABPC1L	96	78.618	Meleagris_gallopavo
ENSMODG00000016198	PABPC1L	99	70.284	ENSMOCG00000013186	Pabpc1l	97	70.284	Microtus_ochrogaster
ENSMODG00000016198	PABPC1L	99	71.005	ENSMMOG00000020574	-	90	89.231	Mola_mola
ENSMODG00000016198	PABPC1L	99	68.679	ENSMALG00000021622	pabpc1l	100	68.679	Monopterus_albus
ENSMODG00000016198	PABPC1L	96	70.537	MGP_CAROLIEiJ_G0024627	Pabpc1l	97	71.000	Mus_caroli
ENSMODG00000016198	PABPC1L	96	70.537	ENSMUSG00000054582	Pabpc1l	97	71.000	Mus_musculus
ENSMODG00000016198	PABPC1L	96	70.275	MGP_PahariEiJ_G0026071	Pabpc1l	97	70.744	Mus_pahari
ENSMODG00000016198	PABPC1L	96	70.537	MGP_SPRETEiJ_G0025549	Pabpc1l	97	71.000	Mus_spretus
ENSMODG00000016198	PABPC1L	99	77.632	ENSMPUG00000017646	PABPC1L	94	77.496	Mustela_putorius_furo
ENSMODG00000016198	PABPC1L	99	72.213	ENSMLUG00000006324	PABPC1L	94	72.093	Myotis_lucifugus
ENSMODG00000016198	PABPC1L	96	72.664	ENSNGAG00000010458	Pabpc1l	97	72.712	Nannospalax_galili
ENSMODG00000016198	PABPC1L	98	74.347	ENSNBRG00000016633	pabpc1l	96	74.347	Neolamprologus_brichardi
ENSMODG00000016198	PABPC1L	92	83.607	ENSMEUG00000007905	-	89	83.607	Notamacropus_eugenii
ENSMODG00000016198	PABPC1L	99	76.539	ENSOPRG00000011846	PABPC1L	97	76.539	Ochotona_princeps
ENSMODG00000016198	PABPC1L	95	72.695	ENSODEG00000015482	PABPC1L	96	72.695	Octodon_degus
ENSMODG00000016198	PABPC1L	61	76.250	ENSODEG00000002920	-	97	76.250	Octodon_degus
ENSMODG00000016198	PABPC1L	99	69.756	ENSONIG00000017314	pabpc1l	97	69.756	Oreochromis_niloticus
ENSMODG00000016198	PABPC1L	92	68.873	ENSOANG00000015793	-	100	68.873	Ornithorhynchus_anatinus
ENSMODG00000016198	PABPC1L	99	71.339	ENSOCUG00000003005	PABPC1L	98	71.496	Oryctolagus_cuniculus
ENSMODG00000016198	PABPC1L	98	74.818	ENSORLG00000010322	pabpc1l	93	74.818	Oryzias_latipes
ENSMODG00000016198	PABPC1L	98	74.818	ENSORLG00020021193	pabpc1l	93	74.818	Oryzias_latipes_hni
ENSMODG00000016198	PABPC1L	98	74.818	ENSORLG00015017018	pabpc1l	93	74.818	Oryzias_latipes_hsok
ENSMODG00000016198	PABPC1L	99	66.304	ENSOMEG00000010789	pabpc1l	95	65.869	Oryzias_melastigma
ENSMODG00000016198	PABPC1L	99	76.499	ENSOGAG00000032999	PABPC1L	97	76.499	Otolemur_garnettii
ENSMODG00000016198	PABPC1L	99	77.243	ENSOARG00000004578	PABPC1L	94	77.094	Ovis_aries
ENSMODG00000016198	PABPC1L	99	79.667	ENSPPAG00000039677	PABPC1L	97	79.833	Pan_paniscus
ENSMODG00000016198	PABPC1L	65	77.469	ENSPPRG00000019327	-	98	77.469	Panthera_pardus
ENSMODG00000016198	PABPC1L	99	79.258	ENSPTIG00000006524	PABPC1L	94	79.167	Panthera_tigris_altaica
ENSMODG00000016198	PABPC1L	67	88.272	ENSPTRG00000013531	PABPC1L	98	88.272	Pan_troglodytes
ENSMODG00000016198	PABPC1L	99	79.633	ENSPANG00000018788	PABPC1L	97	79.800	Papio_anubis
ENSMODG00000016198	PABPC1L	99	73.203	ENSPKIG00000007322	pabpc1l	97	73.203	Paramormyrops_kingsleyae
ENSMODG00000016198	PABPC1L	56	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSMODG00000016198	PABPC1L	70	87.409	ENSPSIG00000013289	PABPC1L	98	87.409	Pelodiscus_sinensis
ENSMODG00000016198	PABPC1L	74	66.837	ENSPMGG00000023121	-	90	66.837	Periophthalmus_magnuspinnatus
ENSMODG00000016198	PABPC1L	64	81.860	ENSPMGG00000023117	pabpc1l	92	87.121	Periophthalmus_magnuspinnatus
ENSMODG00000016198	PABPC1L	99	70.333	ENSPEMG00000020671	Pabpc1l	97	70.364	Peromyscus_maniculatus_bairdii
ENSMODG00000016198	PABPC1L	99	71.570	ENSPFOG00000013241	pabpc1l	96	71.570	Poecilia_formosa
ENSMODG00000016198	PABPC1L	55	90.000	ENSPLAG00000023686	-	92	90.000	Poecilia_latipinna
ENSMODG00000016198	PABPC1L	99	70.292	ENSPLAG00000017490	-	97	70.292	Poecilia_latipinna
ENSMODG00000016198	PABPC1L	55	90.000	ENSPMEG00000009185	-	88	90.000	Poecilia_mexicana
ENSMODG00000016198	PABPC1L	99	70.358	ENSPMEG00000007677	pabpc1l	97	70.358	Poecilia_mexicana
ENSMODG00000016198	PABPC1L	70	79.710	ENSPREG00000015886	pabpc1l	100	79.710	Poecilia_reticulata
ENSMODG00000016198	PABPC1L	99	79.500	ENSPPYG00000011042	PABPC1L	97	79.667	Pongo_abelii
ENSMODG00000016198	PABPC1L	66	92.188	ENSPCAG00000011787	-	75	92.188	Procavia_capensis
ENSMODG00000016198	PABPC1L	99	77.796	ENSPCOG00000020630	PABPC1L	97	78.000	Propithecus_coquereli
ENSMODG00000016198	PABPC1L	99	77.333	ENSPVAG00000012663	PABPC1L	94	77.187	Pteropus_vampyrus
ENSMODG00000016198	PABPC1L	98	74.347	ENSPNYG00000004101	pabpc1l	96	74.347	Pundamilia_nyererei
ENSMODG00000016198	PABPC1L	99	65.691	ENSPNAG00000021248	pabpc1l	97	65.691	Pygocentrus_nattereri
ENSMODG00000016198	PABPC1L	96	70.383	ENSRNOG00000012750	Pabpc1l	97	70.882	Rattus_norvegicus
ENSMODG00000016198	PABPC1L	99	79.333	ENSRBIG00000035381	PABPC1L	97	79.500	Rhinopithecus_bieti
ENSMODG00000016198	PABPC1L	99	79.333	ENSRROG00000044498	PABPC1L	97	79.500	Rhinopithecus_roxellana
ENSMODG00000016198	PABPC1L	99	78.500	ENSSBOG00000009532	-	97	78.500	Saimiri_boliviensis_boliviensis
ENSMODG00000016198	PABPC1L	98	86.709	ENSSHAG00000011446	PABPC1L	97	86.709	Sarcophilus_harrisii
ENSMODG00000016198	PABPC1L	99	73.409	ENSSFOG00015017304	pabpc1l	97	73.409	Scleropages_formosus
ENSMODG00000016198	PABPC1L	99	69.935	ENSSMAG00000010516	pabpc1l	98	86.029	Scophthalmus_maximus
ENSMODG00000016198	PABPC1L	99	70.407	ENSSDUG00000014743	pabpc1l	97	70.407	Seriola_dumerili
ENSMODG00000016198	PABPC1L	98	74.702	ENSSLDG00000006981	pabpc1l	98	84.211	Seriola_lalandi_dorsalis
ENSMODG00000016198	PABPC1L	99	77.760	ENSSPUG00000004233	PABPC1L	96	77.760	Sphenodon_punctatus
ENSMODG00000016198	PABPC1L	99	66.893	ENSSPAG00000017137	pabpc1l	94	66.783	Stegastes_partitus
ENSMODG00000016198	PABPC1L	99	77.349	ENSSSCG00000007382	PABPC1L	94	77.202	Sus_scrofa
ENSMODG00000016198	PABPC1L	99	77.134	ENSTGUG00000005114	PABPC1L	94	76.987	Taeniopygia_guttata
ENSMODG00000016198	PABPC1L	99	70.636	ENSTRUG00000011085	pabpc1l	98	70.636	Takifugu_rubripes
ENSMODG00000016198	PABPC1L	99	68.679	ENSTNIG00000017903	pabpc1l	96	68.679	Tetraodon_nigroviridis
ENSMODG00000016198	PABPC1L	93	87.671	ENSTBEG00000002851	PABPC1L	77	87.671	Tupaia_belangeri
ENSMODG00000016198	PABPC1L	97	76.460	ENSTTRG00000007618	PABPC1L	97	76.460	Tursiops_truncatus
ENSMODG00000016198	PABPC1L	99	77.000	ENSUAMG00000017682	PABPC1L	94	76.844	Ursus_americanus
ENSMODG00000016198	PABPC1L	72	82.667	ENSUMAG00000025436	PABPC1L	96	82.667	Ursus_maritimus
ENSMODG00000016198	PABPC1L	99	75.626	ENSVVUG00000018939	PABPC1L	94	75.430	Vulpes_vulpes
ENSMODG00000016198	PABPC1L	99	73.083	ENSXETG00000022831	pabpc1l	96	73.083	Xenopus_tropicalis
ENSMODG00000016198	PABPC1L	99	70.936	ENSXCOG00000005459	pabpc1l	99	85.106	Xiphophorus_couchianus
ENSMODG00000016198	PABPC1L	99	69.968	ENSXMAG00000017135	pabpc1l	97	69.968	Xiphophorus_maculatus