EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000016478 (Gene tree)
Gene ID: 100013290
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 96627 bases
Position: chr1:40396758-40493384
Accession: 24086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000020576	DND1_DSRM	PF14709.7	4.4e-25	1	1
ENSMODP00000020576	RRM_1	PF00076.22	1.4e-40	1	3
ENSMODP00000020576	RRM_1	PF00076.22	1.4e-40	2	3
ENSMODP00000020576	RRM_1	PF00076.22	1.4e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000020941	A1CF-201	2292	-	ENSMODP00000020576	538 (aa)	-	F6ZDI9

Gene Model

Click here to download ENSMODG00000016478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000016478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000016478	A1CF	94	72.333	ENSMODG00000001302	RBM46	77	72.333
ENSMODG00000016478	A1CF	80	56.561	ENSMODG00000020561	-	72	56.404
ENSMODG00000016478	A1CF	57	62.939	ENSMODG00000015426	-	96	63.636
ENSMODG00000016478	A1CF	56	53.247	ENSMODG00000000609	-	55	53.247
ENSMODG00000016478	A1CF	80	59.819	ENSMODG00000007003	RBM47	72	59.819

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000016478	A1CF	99	91.450	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
ENSMODG00000016478	A1CF	99	76.427	ENSAPOG00000008259	a1cf	93	75.506	Acanthochromis_polyacanthus
ENSMODG00000016478	A1CF	96	89.753	ENSAMEG00000000523	A1CF	92	88.807	Ailuropoda_melanoleuca
ENSMODG00000016478	A1CF	97	78.358	ENSACIG00000008632	a1cf	89	79.291	Amphilophus_citrinellus
ENSMODG00000016478	A1CF	99	77.132	ENSAOCG00000023744	a1cf	96	82.609	Amphiprion_ocellaris
ENSMODG00000016478	A1CF	99	75.850	ENSAPEG00000009537	a1cf	94	76.029	Amphiprion_percula
ENSMODG00000016478	A1CF	97	78.957	ENSATEG00000013720	a1cf	92	78.417	Anabas_testudineus
ENSMODG00000016478	A1CF	99	89.174	ENSAPLG00000002964	A1CF	92	88.991	Anas_platyrhynchos
ENSMODG00000016478	A1CF	99	86.220	ENSACAG00000015269	A1CF	92	86.220	Anolis_carolinensis
ENSMODG00000016478	A1CF	97	92.706	ENSANAG00000019974	A1CF	89	92.706	Aotus_nancymaae
ENSMODG00000016478	A1CF	97	77.612	ENSACLG00000017428	a1cf	91	79.291	Astatotilapia_calliptera
ENSMODG00000016478	A1CF	97	74.859	ENSAMXG00000018180	a1cf	88	73.694	Astyanax_mexicanus
ENSMODG00000016478	A1CF	97	92.131	ENSBTAG00000021195	A1CF	100	90.724	Bos_taurus
ENSMODG00000016478	A1CF	97	91.115	ENSCJAG00000005045	A1CF	89	91.115	Callithrix_jacchus
ENSMODG00000016478	A1CF	96	90.133	ENSCAFG00000015581	A1CF	92	89.358	Canis_familiaris
ENSMODG00000016478	A1CF	96	90.133	ENSCAFG00020026421	A1CF	98	90.572	Canis_lupus_dingo
ENSMODG00000016478	A1CF	97	89.981	ENSCHIG00000020411	A1CF	92	88.848	Capra_hircus
ENSMODG00000016478	A1CF	90	91.959	ENSTSYG00000001755	A1CF	91	91.071	Carlito_syrichta
ENSMODG00000016478	A1CF	99	80.864	ENSCAPG00000017386	A1CF	85	81.410	Cavia_aperea
ENSMODG00000016478	A1CF	97	90.737	ENSCPOG00000009807	A1CF	92	89.011	Cavia_porcellus
ENSMODG00000016478	A1CF	99	90.092	ENSCCAG00000018168	A1CF	92	90.092	Cebus_capucinus
ENSMODG00000016478	A1CF	99	91.248	ENSCATG00000043715	A1CF	97	88.869	Cercocebus_atys
ENSMODG00000016478	A1CF	97	90.189	ENSCLAG00000010424	A1CF	92	88.686	Chinchilla_lanigera
ENSMODG00000016478	A1CF	99	90.275	ENSCSAG00000007032	A1CF	92	90.275	Chlorocebus_sabaeus
ENSMODG00000016478	A1CF	94	87.938	ENSCHOG00000009089	A1CF	90	86.330	Choloepus_hoffmanni
ENSMODG00000016478	A1CF	99	88.440	ENSCPBG00000026464	A1CF	92	88.440	Chrysemys_picta_bellii
ENSMODG00000016478	A1CF	99	90.092	ENSCANG00000038032	A1CF	92	90.092	Colobus_angolensis_palliatus
ENSMODG00000016478	A1CF	97	90.170	ENSCGRG00001017413	A1cf	92	88.665	Cricetulus_griseus_chok1gshd
ENSMODG00000016478	A1CF	97	90.152	ENSCGRG00000017332	A1cf	89	89.831	Cricetulus_griseus_crigri
ENSMODG00000016478	A1CF	97	77.674	ENSCSEG00000002361	a1cf	88	77.298	Cynoglossus_semilaevis
ENSMODG00000016478	A1CF	97	77.281	ENSCVAG00000010520	a1cf	89	79.143	Cyprinodon_variegatus
ENSMODG00000016478	A1CF	97	82.319	ENSDARG00000002968	a1cf	92	80.996	Danio_rerio
ENSMODG00000016478	A1CF	97	90.548	ENSDNOG00000002829	A1CF	92	89.031	Dasypus_novemcinctus
ENSMODG00000016478	A1CF	77	90.580	ENSETEG00000012527	A1CF	73	90.580	Echinops_telfairi
ENSMODG00000016478	A1CF	97	90.926	ENSEASG00005012924	A1CF	92	89.617	Equus_asinus_asinus
ENSMODG00000016478	A1CF	97	90.737	ENSECAG00000010424	A1CF	92	89.435	Equus_caballus
ENSMODG00000016478	A1CF	85	78.431	ENSEEUG00000000013	A1CF	97	79.148	Erinaceus_europaeus
ENSMODG00000016478	A1CF	97	79.888	ENSELUG00000003159	a1cf	91	79.888	Esox_lucius
ENSMODG00000016478	A1CF	97	89.827	ENSFCAG00000011179	A1CF	92	89.572	Felis_catus
ENSMODG00000016478	A1CF	99	89.199	ENSFALG00000013183	A1CF	92	89.013	Ficedula_albicollis
ENSMODG00000016478	A1CF	97	91.221	ENSFDAG00000019371	A1CF	92	89.981	Fukomys_damarensis
ENSMODG00000016478	A1CF	97	71.508	ENSFHEG00000019652	a1cf	96	85.156	Fundulus_heteroclitus
ENSMODG00000016478	A1CF	99	71.171	ENSGMOG00000018943	a1cf	89	72.491	Gadus_morhua
ENSMODG00000016478	A1CF	94	87.743	ENSGALG00000003765	A1CF	88	87.549	Gallus_gallus
ENSMODG00000016478	A1CF	97	72.316	ENSGAFG00000014868	a1cf	88	72.693	Gambusia_affinis
ENSMODG00000016478	A1CF	99	73.703	ENSGACG00000010241	a1cf	88	75.139	Gasterosteus_aculeatus
ENSMODG00000016478	A1CF	94	88.281	ENSGAGG00000016508	A1CF	88	88.281	Gopherus_agassizii
ENSMODG00000016478	A1CF	99	90.110	ENSGGOG00000009670	A1CF	92	90.110	Gorilla_gorilla
ENSMODG00000016478	A1CF	97	77.985	ENSHBUG00000021959	a1cf	89	79.664	Haplochromis_burtoni
ENSMODG00000016478	A1CF	96	91.065	ENSHGLG00000008955	A1CF	92	89.214	Heterocephalus_glaber_female
ENSMODG00000016478	A1CF	96	90.304	ENSHGLG00100000518	A1CF	92	88.483	Heterocephalus_glaber_male
ENSMODG00000016478	A1CF	99	72.469	ENSHCOG00000017669	a1cf	92	73.712	Hippocampus_comes
ENSMODG00000016478	A1CF	97	81.343	ENSIPUG00000010367	a1cf	96	80.410	Ictalurus_punctatus
ENSMODG00000016478	A1CF	97	78.085	ENSKMAG00000006568	a1cf	89	77.656	Kryptolebias_marmoratus
ENSMODG00000016478	A1CF	97	76.095	ENSLBEG00000020994	a1cf	92	75.575	Labrus_bergylta
ENSMODG00000016478	A1CF	99	82.967	ENSLACG00000008061	A1CF	90	84.981	Latimeria_chalumnae
ENSMODG00000016478	A1CF	97	82.927	ENSLOCG00000006302	a1cf	92	82.149	Lepisosteus_oculatus
ENSMODG00000016478	A1CF	98	90.485	ENSLAFG00000015462	A1CF	92	89.762	Loxodonta_africana
ENSMODG00000016478	A1CF	99	91.620	ENSMFAG00000035948	A1CF	97	89.234	Macaca_fascicularis
ENSMODG00000016478	A1CF	99	91.620	ENSMMUG00000007077	A1CF	92	91.620	Macaca_mulatta
ENSMODG00000016478	A1CF	99	91.248	ENSMNEG00000031454	A1CF	97	89.744	Macaca_nemestrina
ENSMODG00000016478	A1CF	99	89.908	ENSMLEG00000037223	A1CF	94	89.700	Mandrillus_leucophaeus
ENSMODG00000016478	A1CF	97	76.923	ENSMAMG00000010402	a1cf	92	76.993	Mastacembelus_armatus
ENSMODG00000016478	A1CF	99	76.685	ENSMZEG00005013245	a1cf	90	78.399	Maylandia_zebra
ENSMODG00000016478	A1CF	99	87.729	ENSMGAG00000001507	A1CF	92	87.546	Meleagris_gallopavo
ENSMODG00000016478	A1CF	97	89.205	ENSMAUG00000007422	A1cf	92	87.569	Mesocricetus_auratus
ENSMODG00000016478	A1CF	97	91.731	ENSMICG00000003377	A1CF	89	91.412	Microcebus_murinus
ENSMODG00000016478	A1CF	97	90.170	ENSMOCG00000021536	A1cf	92	89.031	Microtus_ochrogaster
ENSMODG00000016478	A1CF	90	74.000	ENSMMOG00000009422	a1cf	86	75.800	Mola_mola
ENSMODG00000016478	A1CF	99	75.746	ENSMALG00000012992	a1cf	91	76.762	Monopterus_albus
ENSMODG00000016478	A1CF	97	90.595	MGP_CAROLIEiJ_G0022873	A1cf	92	88.868	Mus_caroli
ENSMODG00000016478	A1CF	97	90.595	ENSMUSG00000052595	A1cf	99	91.864	Mus_musculus
ENSMODG00000016478	A1CF	99	88.497	MGP_PahariEiJ_G0014366	A1cf	92	88.312	Mus_pahari
ENSMODG00000016478	A1CF	97	90.403	MGP_SPRETEiJ_G0023792	A1cf	92	88.683	Mus_spretus
ENSMODG00000016478	A1CF	96	83.650	ENSMPUG00000016971	A1CF	92	83.119	Mustela_putorius_furo
ENSMODG00000016478	A1CF	97	89.414	ENSMLUG00000016071	A1CF	89	89.098	Myotis_lucifugus
ENSMODG00000016478	A1CF	97	89.962	ENSNGAG00000015136	A1cf	92	88.483	Nannospalax_galili
ENSMODG00000016478	A1CF	97	77.985	ENSNBRG00000001712	a1cf	89	79.664	Neolamprologus_brichardi
ENSMODG00000016478	A1CF	97	91.304	ENSNLEG00000012028	A1CF	92	90.311	Nomascus_leucogenys
ENSMODG00000016478	A1CF	94	95.040	ENSMEUG00000015909	A1CF	91	95.040	Notamacropus_eugenii
ENSMODG00000016478	A1CF	96	79.278	ENSOPRG00000010667	A1CF	97	79.017	Ochotona_princeps
ENSMODG00000016478	A1CF	97	78.918	ENSONIG00000019105	a1cf	89	79.664	Oreochromis_niloticus
ENSMODG00000016478	A1CF	85	90.196	ENSOANG00000007360	A1CF	99	90.196	Ornithorhynchus_anatinus
ENSMODG00000016478	A1CF	96	91.892	ENSOCUG00000011587	A1CF	89	91.221	Oryctolagus_cuniculus
ENSMODG00000016478	A1CF	99	76.703	ENSORLG00000013342	a1cf	93	76.225	Oryzias_latipes
ENSMODG00000016478	A1CF	99	76.964	ENSORLG00020000586	a1cf	92	76.071	Oryzias_latipes_hni
ENSMODG00000016478	A1CF	99	76.964	ENSORLG00015018569	a1cf	92	76.071	Oryzias_latipes_hsok
ENSMODG00000016478	A1CF	99	78.119	ENSOMEG00000013531	a1cf	89	78.652	Oryzias_melastigma
ENSMODG00000016478	A1CF	96	90.684	ENSOGAG00000012884	A1CF	92	89.725	Otolemur_garnettii
ENSMODG00000016478	A1CF	97	89.981	ENSOARG00000013695	A1CF	92	89.031	Ovis_aries
ENSMODG00000016478	A1CF	96	88.258	ENSPPAG00000028115	A1CF	100	90.909	Pan_paniscus
ENSMODG00000016478	A1CF	97	88.847	ENSPPRG00000012180	A1CF	92	88.624	Panthera_pardus
ENSMODG00000016478	A1CF	97	88.847	ENSPTIG00000021223	A1CF	92	88.624	Panthera_tigris_altaica
ENSMODG00000016478	A1CF	99	91.636	ENSPTRG00000002508	A1CF	92	91.636	Pan_troglodytes
ENSMODG00000016478	A1CF	99	91.620	ENSPANG00000021988	A1CF	94	90.075	Papio_anubis
ENSMODG00000016478	A1CF	99	80.182	ENSPKIG00000025176	a1cf	92	79.455	Paramormyrops_kingsleyae
ENSMODG00000016478	A1CF	99	89.944	ENSPSIG00000010318	A1CF	92	89.944	Pelodiscus_sinensis
ENSMODG00000016478	A1CF	96	72.587	ENSPMGG00000013359	a1cf	89	73.359	Periophthalmus_magnuspinnatus
ENSMODG00000016478	A1CF	99	88.483	ENSPEMG00000015021	A1cf	89	90.548	Peromyscus_maniculatus_bairdii
ENSMODG00000016478	A1CF	99	94.413	ENSPCIG00000002175	A1CF	92	94.413	Phascolarctos_cinereus
ENSMODG00000016478	A1CF	97	75.963	ENSPFOG00000006683	a1cf	89	77.798	Poecilia_formosa
ENSMODG00000016478	A1CF	97	75.780	ENSPFOG00000007437	-	89	77.615	Poecilia_formosa
ENSMODG00000016478	A1CF	97	76.909	ENSPLAG00000001210	-	89	78.771	Poecilia_latipinna
ENSMODG00000016478	A1CF	97	76.909	ENSPLAG00000000026	a1cf	89	78.771	Poecilia_latipinna
ENSMODG00000016478	A1CF	97	69.159	ENSPMEG00000000921	a1cf	88	71.028	Poecilia_mexicana
ENSMODG00000016478	A1CF	97	68.140	ENSPMEG00000015529	-	88	69.982	Poecilia_mexicana
ENSMODG00000016478	A1CF	99	74.468	ENSPREG00000016298	a1cf	92	76.241	Poecilia_reticulata
ENSMODG00000016478	A1CF	97	92.898	ENSPPYG00000002819	A1CF	92	91.837	Pongo_abelii
ENSMODG00000016478	A1CF	68	78.630	ENSPCAG00000006463	A1CF	62	78.630	Procavia_capensis
ENSMODG00000016478	A1CF	97	90.341	ENSPCOG00000024172	A1CF	89	90.038	Propithecus_coquereli
ENSMODG00000016478	A1CF	97	76.838	ENSPNYG00000017944	a1cf	89	78.493	Pundamilia_nyererei
ENSMODG00000016478	A1CF	97	82.197	ENSPNAG00000007704	a1cf	89	81.474	Pygocentrus_nattereri
ENSMODG00000016478	A1CF	97	90.787	ENSRNOG00000033195	A1cf	92	89.054	Rattus_norvegicus
ENSMODG00000016478	A1CF	99	83.364	ENSRBIG00000042892	A1CF	90	89.404	Rhinopithecus_bieti
ENSMODG00000016478	A1CF	99	90.275	ENSRROG00000041398	A1CF	92	90.275	Rhinopithecus_roxellana
ENSMODG00000016478	A1CF	99	89.945	ENSSBOG00000021930	A1CF	92	89.945	Saimiri_boliviensis_boliviensis
ENSMODG00000016478	A1CF	99	95.345	ENSSHAG00000005096	A1CF	92	95.345	Sarcophilus_harrisii
ENSMODG00000016478	A1CF	96	83.301	ENSSFOG00015011774	a1cf	93	83.130	Scleropages_formosus
ENSMODG00000016478	A1CF	97	75.963	ENSSMAG00000013271	a1cf	89	75.596	Scophthalmus_maximus
ENSMODG00000016478	A1CF	97	77.239	ENSSDUG00000013930	a1cf	89	77.612	Seriola_dumerili
ENSMODG00000016478	A1CF	97	73.905	ENSSLDG00000004290	a1cf	89	73.905	Seriola_lalandi_dorsalis
ENSMODG00000016478	A1CF	91	81.098	ENSSARG00000005940	A1CF	85	81.212	Sorex_araneus
ENSMODG00000016478	A1CF	93	87.205	ENSSPUG00000006797	A1CF	85	88.024	Sphenodon_punctatus
ENSMODG00000016478	A1CF	97	90.926	ENSSSCG00000010431	A1CF	92	89.580	Sus_scrofa
ENSMODG00000016478	A1CF	99	88.073	ENSTGUG00000005090	A1CF	90	87.890	Taeniopygia_guttata
ENSMODG00000016478	A1CF	99	74.468	ENSTRUG00000001982	a1cf	92	74.468	Takifugu_rubripes
ENSMODG00000016478	A1CF	97	76.557	ENSTNIG00000003580	a1cf	89	76.557	Tetraodon_nigroviridis
ENSMODG00000016478	A1CF	93	84.493	ENSTTRG00000013190	A1CF	87	83.301	Tursiops_truncatus
ENSMODG00000016478	A1CF	97	90.787	ENSUAMG00000020065	A1CF	92	90.130	Ursus_americanus
ENSMODG00000016478	A1CF	97	89.225	ENSUMAG00000011162	A1CF	92	88.073	Ursus_maritimus
ENSMODG00000016478	A1CF	83	89.286	ENSVPAG00000006130	A1CF	75	89.286	Vicugna_pacos
ENSMODG00000016478	A1CF	97	91.555	ENSVVUG00000002504	A1CF	97	91.221	Vulpes_vulpes
ENSMODG00000016478	A1CF	99	78.044	ENSXETG00000006611	a1cf	91	78.318	Xenopus_tropicalis
ENSMODG00000016478	A1CF	97	79.174	ENSXCOG00000003302	a1cf	89	79.550	Xiphophorus_couchianus
ENSMODG00000016478	A1CF	97	78.004	ENSXMAG00000016703	a1cf	89	78.373	Xiphophorus_maculatus