EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000016794 (Gene tree)
Gene ID: 100013371
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 112192 bases
Position: chr8:135794722-135906913
Accession: 100013371
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000020962	Upf2	PF04050.14	1.6e-33	1	1
ENSMODP00000020962	MIF4G	PF02854.19	6.8e-75	1	3
ENSMODP00000020962	MIF4G	PF02854.19	6.8e-75	2	3
ENSMODP00000020962	MIF4G	PF02854.19	6.8e-75	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000021332	UPF2-201	4245	-	ENSMODP00000020962	1271 (aa)	XP_007504016	F7G5X8

Gene Model

Click here to download ENSMODG00000016794's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03013	RNA transport	KEGG
mdo03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000016794's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000016794	UPF2	100	95.362	ENSG00000151461	UPF2	100	95.362	Homo_sapiens
ENSMODG00000016794	UPF2	99	78.935	ENSAPOG00000015837	UPF2	100	76.273	Acanthochromis_polyacanthus
ENSMODG00000016794	UPF2	100	96.381	ENSAMEG00000004586	UPF2	100	96.381	Ailuropoda_melanoleuca
ENSMODG00000016794	UPF2	99	83.281	ENSACIG00000018078	UPF2	100	81.094	Amphilophus_citrinellus
ENSMODG00000016794	UPF2	100	83.073	ENSAOCG00000016766	UPF2	100	81.045	Amphiprion_ocellaris
ENSMODG00000016794	UPF2	100	83.151	ENSAPEG00000019084	UPF2	100	81.123	Amphiprion_percula
ENSMODG00000016794	UPF2	100	82.815	ENSATEG00000021677	UPF2	99	80.763	Anabas_testudineus
ENSMODG00000016794	UPF2	100	87.402	ENSAPLG00000010287	UPF2	90	92.007	Anas_platyrhynchos
ENSMODG00000016794	UPF2	100	93.312	ENSACAG00000009259	UPF2	100	93.312	Anolis_carolinensis
ENSMODG00000016794	UPF2	99	86.242	ENSANAG00000028451	UPF2	99	85.063	Aotus_nancymaae
ENSMODG00000016794	UPF2	100	81.435	ENSACLG00000012696	UPF2	100	81.201	Astatotilapia_calliptera
ENSMODG00000016794	UPF2	99	82.864	ENSAMXG00000013700	UPF2	99	82.551	Astyanax_mexicanus
ENSMODG00000016794	UPF2	100	96.302	ENSBTAG00000000288	UPF2	100	100.000	Bos_taurus
ENSMODG00000016794	UPF2	100	94.807	ENSCJAG00000020685	UPF2	100	94.807	Callithrix_jacchus
ENSMODG00000016794	UPF2	100	96.459	ENSCAFG00000004839	UPF2	100	96.459	Canis_familiaris
ENSMODG00000016794	UPF2	99	94.090	ENSCAFG00020005882	UPF2	98	95.846	Canis_lupus_dingo
ENSMODG00000016794	UPF2	100	96.381	ENSCHIG00000020359	UPF2	100	96.381	Capra_hircus
ENSMODG00000016794	UPF2	100	95.122	ENSTSYG00000000935	UPF2	100	95.122	Carlito_syrichta
ENSMODG00000016794	UPF2	91	85.800	ENSCAPG00000016658	UPF2	95	85.357	Cavia_aperea
ENSMODG00000016794	UPF2	99	93.894	ENSCPOG00000008809	UPF2	99	93.418	Cavia_porcellus
ENSMODG00000016794	UPF2	100	87.884	ENSCCAG00000035991	UPF2	100	87.884	Cebus_capucinus
ENSMODG00000016794	UPF2	100	95.597	ENSCATG00000032679	UPF2	100	95.597	Cercocebus_atys
ENSMODG00000016794	UPF2	100	95.358	ENSCLAG00000011434	UPF2	100	94.886	Chinchilla_lanigera
ENSMODG00000016794	UPF2	100	95.597	ENSCSAG00000013372	UPF2	100	95.597	Chlorocebus_sabaeus
ENSMODG00000016794	UPF2	87	96.652	ENSCHOG00000000422	UPF2	89	96.652	Choloepus_hoffmanni
ENSMODG00000016794	UPF2	99	93.932	ENSCPBG00000027823	UPF2	93	96.296	Chrysemys_picta_bellii
ENSMODG00000016794	UPF2	79	49.311	ENSCSAVG00000007772	-	79	50.701	Ciona_savignyi
ENSMODG00000016794	UPF2	99	89.297	ENSCANG00000040396	UPF2	100	89.929	Colobus_angolensis_palliatus
ENSMODG00000016794	UPF2	100	95.594	ENSCGRG00001019347	Upf2	100	95.122	Cricetulus_griseus_chok1gshd
ENSMODG00000016794	UPF2	100	95.594	ENSCGRG00000017993	Upf2	100	95.122	Cricetulus_griseus_crigri
ENSMODG00000016794	UPF2	91	81.552	ENSCSEG00000003520	UPF2	71	84.035	Cynoglossus_semilaevis
ENSMODG00000016794	UPF2	99	83.189	ENSCVAG00000006167	UPF2	100	80.676	Cyprinodon_variegatus
ENSMODG00000016794	UPF2	100	96.145	ENSDNOG00000018160	UPF2	100	96.145	Dasypus_novemcinctus
ENSMODG00000016794	UPF2	100	94.965	ENSDORG00000002478	Upf2	100	94.493	Dipodomys_ordii
ENSMODG00000016794	UPF2	72	98.540	ENSETEG00000011583	-	66	98.485	Echinops_telfairi
ENSMODG00000016794	UPF2	69	68.657	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSMODG00000016794	UPF2	100	94.335	ENSEASG00005019274	UPF2	100	97.222	Equus_asinus_asinus
ENSMODG00000016794	UPF2	100	95.987	ENSECAG00000017022	UPF2	100	95.515	Equus_caballus
ENSMODG00000016794	UPF2	82	93.930	ENSEEUG00000007819	UPF2	82	93.930	Erinaceus_europaeus
ENSMODG00000016794	UPF2	99	81.861	ENSELUG00000012014	UPF2	100	82.348	Esox_lucius
ENSMODG00000016794	UPF2	100	97.238	ENSFCAG00000005785	UPF2	100	96.302	Felis_catus
ENSMODG00000016794	UPF2	100	94.256	ENSFALG00000001889	UPF2	98	94.256	Ficedula_albicollis
ENSMODG00000016794	UPF2	100	94.729	ENSFDAG00000014348	UPF2	100	93.784	Fukomys_damarensis
ENSMODG00000016794	UPF2	99	83.848	ENSFHEG00000009826	UPF2	99	81.394	Fundulus_heteroclitus
ENSMODG00000016794	UPF2	91	84.024	ENSGMOG00000005557	UPF2	91	83.563	Gadus_morhua
ENSMODG00000016794	UPF2	100	94.654	ENSGALG00000033772	UPF2	100	94.654	Gallus_gallus
ENSMODG00000016794	UPF2	92	84.983	ENSGAFG00000020867	UPF2	100	80.031	Gambusia_affinis
ENSMODG00000016794	UPF2	90	84.211	ENSGACG00000001080	UPF2	100	80.078	Gasterosteus_aculeatus
ENSMODG00000016794	UPF2	100	94.178	ENSGAGG00000002700	UPF2	100	94.178	Gopherus_agassizii
ENSMODG00000016794	UPF2	100	95.362	ENSGGOG00000001479	UPF2	100	95.362	Gorilla_gorilla
ENSMODG00000016794	UPF2	100	81.279	ENSHBUG00000004249	UPF2	100	81.172	Haplochromis_burtoni
ENSMODG00000016794	UPF2	99	84.646	ENSHGLG00000003822	-	99	83.701	Heterocephalus_glaber_female
ENSMODG00000016794	UPF2	100	95.515	ENSHGLG00000015176	-	100	95.043	Heterocephalus_glaber_female
ENSMODG00000016794	UPF2	88	96.226	ENSHGLG00100010036	UPF2	94	91.681	Heterocephalus_glaber_male
ENSMODG00000016794	UPF2	100	80.420	ENSHCOG00000004025	UPF2	91	83.761	Hippocampus_comes
ENSMODG00000016794	UPF2	100	82.059	ENSIPUG00000015524	UPF2	100	81.733	Ictalurus_punctatus
ENSMODG00000016794	UPF2	100	95.673	ENSSTOG00000013075	UPF2	100	95.673	Ictidomys_tridecemlineatus
ENSMODG00000016794	UPF2	100	93.942	ENSJJAG00000004913	Upf2	100	93.155	Jaculus_jaculus
ENSMODG00000016794	UPF2	92	84.936	ENSKMAG00000001071	UPF2	92	84.727	Kryptolebias_marmoratus
ENSMODG00000016794	UPF2	99	81.001	ENSLBEG00000016394	-	99	80.919	Labrus_bergylta
ENSMODG00000016794	UPF2	71	85.635	ENSLBEG00000000728	-	93	79.882	Labrus_bergylta
ENSMODG00000016794	UPF2	99	80.595	ENSLACG00000015945	UPF2	100	80.721	Latimeria_chalumnae
ENSMODG00000016794	UPF2	99	87.155	ENSLOCG00000015698	UPF2	100	87.076	Lepisosteus_oculatus
ENSMODG00000016794	UPF2	100	95.519	ENSMFAG00000043865	UPF2	100	95.519	Macaca_fascicularis
ENSMODG00000016794	UPF2	100	95.519	ENSMMUG00000008241	UPF2	100	95.519	Macaca_mulatta
ENSMODG00000016794	UPF2	81	94.634	ENSMNEG00000008062	UPF2	99	94.907	Macaca_nemestrina
ENSMODG00000016794	UPF2	99	92.338	ENSMLEG00000036120	UPF2	100	93.071	Mandrillus_leucophaeus
ENSMODG00000016794	UPF2	100	82.737	ENSMAMG00000018276	UPF2	100	80.296	Mastacembelus_armatus
ENSMODG00000016794	UPF2	100	81.435	ENSMZEG00005021595	UPF2	100	81.201	Maylandia_zebra
ENSMODG00000016794	UPF2	99	93.780	ENSMGAG00000004573	UPF2	99	93.780	Meleagris_gallopavo
ENSMODG00000016794	UPF2	100	93.784	ENSMAUG00000016512	Upf2	100	93.784	Mesocricetus_auratus
ENSMODG00000016794	UPF2	95	97.449	ENSMICG00000001716	UPF2	99	97.436	Microcebus_murinus
ENSMODG00000016794	UPF2	100	94.650	ENSMOCG00000008263	Upf2	100	93.784	Microtus_ochrogaster
ENSMODG00000016794	UPF2	90	82.292	ENSMMOG00000006528	UPF2	100	77.482	Mola_mola
ENSMODG00000016794	UPF2	99	82.565	ENSMALG00000002663	UPF2	100	80.893	Monopterus_albus
ENSMODG00000016794	UPF2	100	95.043	MGP_CAROLIEiJ_G0023157	Upf2	100	96.381	Mus_caroli
ENSMODG00000016794	UPF2	100	95.122	ENSMUSG00000043241	Upf2	100	94.650	Mus_musculus
ENSMODG00000016794	UPF2	100	94.807	MGP_PahariEiJ_G0019217	Upf2	100	94.335	Mus_pahari
ENSMODG00000016794	UPF2	100	95.673	MGP_SPRETEiJ_G0024075	Upf2	100	95.673	Mus_spretus
ENSMODG00000016794	UPF2	100	96.381	ENSMPUG00000001064	UPF2	100	96.381	Mustela_putorius_furo
ENSMODG00000016794	UPF2	99	95.365	ENSMLUG00000000228	UPF2	100	95.287	Myotis_lucifugus
ENSMODG00000016794	UPF2	100	81.435	ENSNBRG00000013629	UPF2	100	81.201	Neolamprologus_brichardi
ENSMODG00000016794	UPF2	100	95.362	ENSNLEG00000012058	UPF2	100	95.362	Nomascus_leucogenys
ENSMODG00000016794	UPF2	61	100.000	ENSMEUG00000002180	-	59	100.000	Notamacropus_eugenii
ENSMODG00000016794	UPF2	76	97.887	ENSOPRG00000006801	-	77	97.887	Ochotona_princeps
ENSMODG00000016794	UPF2	100	95.043	ENSODEG00000001290	UPF2	100	94.571	Octodon_degus
ENSMODG00000016794	UPF2	100	81.357	ENSONIG00000017991	UPF2	100	81.123	Oreochromis_niloticus
ENSMODG00000016794	UPF2	99	94.279	ENSOCUG00000006230	UPF2	100	94.749	Oryctolagus_cuniculus
ENSMODG00000016794	UPF2	100	81.712	ENSORLG00000017189	UPF2	100	79.719	Oryzias_latipes
ENSMODG00000016794	UPF2	100	81.712	ENSORLG00020005969	UPF2	100	79.719	Oryzias_latipes_hni
ENSMODG00000016794	UPF2	100	81.712	ENSORLG00015005713	UPF2	100	79.719	Oryzias_latipes_hsok
ENSMODG00000016794	UPF2	99	78.393	ENSOMEG00000023420	UPF2	98	77.013	Oryzias_melastigma
ENSMODG00000016794	UPF2	100	95.673	ENSOGAG00000005796	UPF2	100	95.673	Otolemur_garnettii
ENSMODG00000016794	UPF2	100	96.229	ENSOARG00000014587	UPF2	100	96.229	Ovis_aries
ENSMODG00000016794	UPF2	99	91.634	ENSPPAG00000037953	UPF2	100	92.362	Pan_paniscus
ENSMODG00000016794	UPF2	100	96.302	ENSPPRG00000000690	UPF2	100	96.302	Panthera_pardus
ENSMODG00000016794	UPF2	100	96.302	ENSPTIG00000008867	UPF2	100	96.302	Panthera_tigris_altaica
ENSMODG00000016794	UPF2	100	95.362	ENSPTRG00000002291	UPF2	100	95.362	Pan_troglodytes
ENSMODG00000016794	UPF2	100	95.597	ENSPANG00000023399	UPF2	100	95.597	Papio_anubis
ENSMODG00000016794	UPF2	100	80.811	ENSPKIG00000025502	UPF2	91	85.372	Paramormyrops_kingsleyae
ENSMODG00000016794	UPF2	59	93.625	ENSPSIG00000015158	UPF2	95	93.625	Pelodiscus_sinensis
ENSMODG00000016794	UPF2	99	81.147	ENSPMGG00000005259	UPF2	100	79.811	Periophthalmus_magnuspinnatus
ENSMODG00000016794	UPF2	93	93.878	ENSPEMG00000015731	Upf2	99	93.878	Peromyscus_maniculatus_bairdii
ENSMODG00000016794	UPF2	100	98.741	ENSPCIG00000006656	UPF2	100	98.741	Phascolarctos_cinereus
ENSMODG00000016794	UPF2	92	85.324	ENSPFOG00000017118	UPF2	100	80.187	Poecilia_formosa
ENSMODG00000016794	UPF2	92	85.324	ENSPLAG00000005094	UPF2	100	80.187	Poecilia_latipinna
ENSMODG00000016794	UPF2	92	85.324	ENSPMEG00000017009	UPF2	100	80.187	Poecilia_mexicana
ENSMODG00000016794	UPF2	99	80.266	ENSPREG00000021880	UPF2	100	80.501	Poecilia_reticulata
ENSMODG00000016794	UPF2	66	96.651	ENSPPYG00000002089	-	100	96.651	Pongo_abelii
ENSMODG00000016794	UPF2	100	82.219	ENSPCAG00000000684	UPF2	100	82.219	Procavia_capensis
ENSMODG00000016794	UPF2	99	92.356	ENSPCOG00000021656	UPF2	100	92.120	Propithecus_coquereli
ENSMODG00000016794	UPF2	100	88.443	ENSPVAG00000017286	UPF2	100	88.443	Pteropus_vampyrus
ENSMODG00000016794	UPF2	99	78.906	ENSPNYG00000017096	UPF2	100	78.672	Pundamilia_nyererei
ENSMODG00000016794	UPF2	100	83.307	ENSPNAG00000009357	UPF2	100	83.151	Pygocentrus_nattereri
ENSMODG00000016794	UPF2	99	89.717	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSMODG00000016794	UPF2	99	94.169	ENSRBIG00000037780	UPF2	100	93.696	Rhinopithecus_bieti
ENSMODG00000016794	UPF2	100	95.047	ENSRROG00000043547	UPF2	100	94.575	Rhinopithecus_roxellana
ENSMODG00000016794	UPF2	100	94.099	ENSSBOG00000020012	UPF2	100	93.627	Saimiri_boliviensis_boliviensis
ENSMODG00000016794	UPF2	100	83.632	ENSSFOG00015023788	upf2	100	83.398	Scleropages_formosus
ENSMODG00000016794	UPF2	90	83.117	ENSSMAG00000007637	UPF2	100	79.364	Scophthalmus_maximus
ENSMODG00000016794	UPF2	100	83.151	ENSSDUG00000017244	UPF2	99	81.123	Seriola_dumerili
ENSMODG00000016794	UPF2	99	81.441	ENSSLDG00000016866	UPF2	82	81.809	Seriola_lalandi_dorsalis
ENSMODG00000016794	UPF2	100	94.178	ENSSARG00000008615	UPF2	100	94.178	Sorex_araneus
ENSMODG00000016794	UPF2	99	91.417	ENSSPUG00000014544	UPF2	99	91.417	Sphenodon_punctatus
ENSMODG00000016794	UPF2	68	96.663	ENSSSCG00000011117	-	100	96.663	Sus_scrofa
ENSMODG00000016794	UPF2	99	94.085	ENSTGUG00000002163	-	100	94.085	Taeniopygia_guttata
ENSMODG00000016794	UPF2	100	82.087	ENSTRUG00000007519	UPF2	99	80.031	Takifugu_rubripes
ENSMODG00000016794	UPF2	93	88.061	ENSTBEG00000012679	UPF2	93	87.553	Tupaia_belangeri
ENSMODG00000016794	UPF2	100	96.066	ENSTTRG00000016388	UPF2	100	95.673	Tursiops_truncatus
ENSMODG00000016794	UPF2	92	97.917	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSMODG00000016794	UPF2	100	96.459	ENSUMAG00000012953	UPF2	95	96.459	Ursus_maritimus
ENSMODG00000016794	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSMODG00000016794	UPF2	100	96.381	ENSVVUG00000006166	UPF2	100	96.381	Vulpes_vulpes
ENSMODG00000016794	UPF2	100	84.953	ENSXETG00000033103	UPF2	91	89.360	Xenopus_tropicalis
ENSMODG00000016794	UPF2	92	84.872	ENSXCOG00000011604	UPF2	100	80.000	Xiphophorus_couchianus
ENSMODG00000016794	UPF2	92	85.154	ENSXMAG00000017209	UPF2	100	79.953	Xiphophorus_maculatus