EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000016901 (Gene tree)
Gene ID: 100023077
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 22976 bases
Position: chr2:191149289-191172264
Accession: 100023077
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000021094	EST1	PF10374.9	8.6e-25	1	1
ENSMODP00000021094	EST1_DNA_bind	PF10373.9	1.8e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000021466	SMG5-201	2709	XM_007482062	ENSMODP00000021094	903 (aa)	XP_007482124	F6X1A4

Gene Model

Click here to download ENSMODG00000016901's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000016901's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000016901	SMG5	74	38.346	ENSMODG00000004532	-	73	38.442
ENSMODG00000016901	SMG5	95	33.484	ENSMODG00000004511	-	87	33.220
ENSMODG00000016901	SMG5	73	37.500	ENSMODG00000004735	-	71	37.600
ENSMODG00000016901	SMG5	70	36.434	ENSMODG00000010675	-	70	37.209

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000016901	SMG5	98	90.428	ENSG00000198952	SMG5	87	89.977	Homo_sapiens
ENSMODG00000016901	SMG5	98	66.966	ENSAPOG00000019690	smg5	86	66.591	Acanthochromis_polyacanthus
ENSMODG00000016901	SMG5	96	86.936	ENSAMEG00000014458	SMG5	87	86.175	Ailuropoda_melanoleuca
ENSMODG00000016901	SMG5	98	64.995	ENSACIG00000001353	smg5	87	66.375	Amphilophus_citrinellus
ENSMODG00000016901	SMG5	96	66.780	ENSAOCG00000019483	smg5	83	66.856	Amphiprion_ocellaris
ENSMODG00000016901	SMG5	96	66.629	ENSAPEG00000022949	smg5	85	66.743	Amphiprion_percula
ENSMODG00000016901	SMG5	98	66.224	ENSATEG00000005348	smg5	87	67.778	Anabas_testudineus
ENSMODG00000016901	SMG5	95	81.348	ENSAPLG00000010263	SMG5	87	80.915	Anas_platyrhynchos
ENSMODG00000016901	SMG5	52	71.546	ENSACAG00000009162	-	94	75.165	Anolis_carolinensis
ENSMODG00000016901	SMG5	98	90.315	ENSANAG00000032899	SMG5	87	89.865	Aotus_nancymaae
ENSMODG00000016901	SMG5	98	65.137	ENSACLG00000009311	smg5	87	65.862	Astatotilapia_calliptera
ENSMODG00000016901	SMG5	98	44.566	ENSBTAG00000021747	-	87	44.127	Bos_taurus
ENSMODG00000016901	SMG5	98	88.288	ENSBTAG00000009435	SMG5	87	89.302	Bos_taurus
ENSMODG00000016901	SMG5	98	90.541	ENSCJAG00000005684	SMG5	91	90.090	Callithrix_jacchus
ENSMODG00000016901	SMG5	98	88.739	ENSCAFG00000016839	SMG5	87	88.063	Canis_familiaris
ENSMODG00000016901	SMG5	98	88.739	ENSCAFG00020006061	SMG5	87	88.063	Canis_lupus_dingo
ENSMODG00000016901	SMG5	97	45.089	ENSCHIG00000006323	-	87	44.507	Capra_hircus
ENSMODG00000016901	SMG5	98	88.063	ENSCHIG00000007709	SMG5	87	89.077	Capra_hircus
ENSMODG00000016901	SMG5	98	90.101	ENSTSYG00000004099	SMG5	87	89.651	Carlito_syrichta
ENSMODG00000016901	SMG5	95	65.694	ENSCAPG00000003631	SMG5	86	68.345	Cavia_aperea
ENSMODG00000016901	SMG5	98	88.076	ENSCPOG00000015696	SMG5	87	88.976	Cavia_porcellus
ENSMODG00000016901	SMG5	98	90.541	ENSCCAG00000027409	SMG5	87	90.090	Cebus_capucinus
ENSMODG00000016901	SMG5	98	90.541	ENSCATG00000030539	SMG5	87	90.090	Cercocebus_atys
ENSMODG00000016901	SMG5	98	88.976	ENSCLAG00000003983	SMG5	87	89.876	Chinchilla_lanigera
ENSMODG00000016901	SMG5	98	90.541	ENSCSAG00000002120	SMG5	87	90.090	Chlorocebus_sabaeus
ENSMODG00000016901	SMG5	61	87.004	ENSCHOG00000008741	-	57	87.004	Choloepus_hoffmanni
ENSMODG00000016901	SMG5	91	79.556	ENSCPBG00000025848	SMG5	87	80.536	Chrysemys_picta_bellii
ENSMODG00000016901	SMG5	98	32.166	ENSCING00000008706	-	91	32.745	Ciona_intestinalis
ENSMODG00000016901	SMG5	98	86.036	ENSCANG00000029208	SMG5	87	85.586	Colobus_angolensis_palliatus
ENSMODG00000016901	SMG5	98	87.177	ENSCGRG00001006336	Smg5	87	87.514	Cricetulus_griseus_chok1gshd
ENSMODG00000016901	SMG5	54	49.799	ENSCGRG00001000584	-	88	50.204	Cricetulus_griseus_chok1gshd
ENSMODG00000016901	SMG5	96	87.052	ENSCGRG00000005111	Smg5	87	87.384	Cricetulus_griseus_crigri
ENSMODG00000016901	SMG5	98	64.811	ENSCSEG00000014220	smg5	87	65.444	Cynoglossus_semilaevis
ENSMODG00000016901	SMG5	98	58.929	ENSCVAG00000000529	smg5	86	59.733	Cyprinodon_variegatus
ENSMODG00000016901	SMG5	98	85.363	ENSDNOG00000000051	SMG5	87	84.910	Dasypus_novemcinctus
ENSMODG00000016901	SMG5	93	36.396	ENSDNOG00000039862	-	88	35.925	Dasypus_novemcinctus
ENSMODG00000016901	SMG5	98	89.314	ENSDORG00000010382	Smg5	87	88.526	Dipodomys_ordii
ENSMODG00000016901	SMG5	89	94.521	ENSETEG00000010336	SMG5	88	94.521	Echinops_telfairi
ENSMODG00000016901	SMG5	96	45.753	ENSEBUG00000003739	smg5	92	45.588	Eptatretus_burgeri
ENSMODG00000016901	SMG5	98	90.090	ENSEASG00005019122	SMG5	87	89.640	Equus_asinus_asinus
ENSMODG00000016901	SMG5	98	90.090	ENSECAG00000001389	SMG5	87	89.640	Equus_caballus
ENSMODG00000016901	SMG5	67	97.118	ENSEEUG00000012690	SMG5	62	97.118	Erinaceus_europaeus
ENSMODG00000016901	SMG5	98	65.897	ENSELUG00000012585	smg5	87	65.347	Esox_lucius
ENSMODG00000016901	SMG5	98	88.176	ENSFCAG00000011783	SMG5	87	87.514	Felis_catus
ENSMODG00000016901	SMG5	65	83.306	ENSFALG00000001166	-	99	83.306	Ficedula_albicollis
ENSMODG00000016901	SMG5	95	87.731	ENSFDAG00000017388	SMG5	87	87.963	Fukomys_damarensis
ENSMODG00000016901	SMG5	94	60.465	ENSFHEG00000013939	smg5	86	60.581	Fundulus_heteroclitus
ENSMODG00000016901	SMG5	97	79.538	ENSGALG00000029918	-	88	77.766	Gallus_gallus
ENSMODG00000016901	SMG5	98	81.210	ENSGAGG00000016131	SMG5	88	80.865	Gopherus_agassizii
ENSMODG00000016901	SMG5	98	90.541	ENSGGOG00000010932	SMG5	87	90.090	Gorilla_gorilla
ENSMODG00000016901	SMG5	98	64.744	ENSHBUG00000008654	smg5	87	65.755	Haplochromis_burtoni
ENSMODG00000016901	SMG5	98	87.852	ENSHGLG00000019152	SMG5	87	88.076	Heterocephalus_glaber_female
ENSMODG00000016901	SMG5	98	87.656	ENSHGLG00100015948	SMG5	96	87.882	Heterocephalus_glaber_male
ENSMODG00000016901	SMG5	83	72.947	ENSHCOG00000010229	smg5	80	70.766	Hippocampus_comes
ENSMODG00000016901	SMG5	98	89.189	ENSSTOG00000001780	SMG5	87	88.739	Ictidomys_tridecemlineatus
ENSMODG00000016901	SMG5	98	87.640	ENSJJAG00000022763	Smg5	87	87.416	Jaculus_jaculus
ENSMODG00000016901	SMG5	98	66.186	ENSLBEG00000002145	smg5	86	66.667	Labrus_bergylta
ENSMODG00000016901	SMG5	98	64.635	ENSLACG00000010521	SMG5	88	64.418	Latimeria_chalumnae
ENSMODG00000016901	SMG5	93	79.108	ENSLOCG00000008380	smg5	90	79.059	Lepisosteus_oculatus
ENSMODG00000016901	SMG5	98	88.176	ENSLAFG00000006241	SMG5	87	87.725	Loxodonta_africana
ENSMODG00000016901	SMG5	98	90.541	ENSMFAG00000045357	SMG5	87	90.090	Macaca_fascicularis
ENSMODG00000016901	SMG5	98	90.428	ENSMMUG00000000090	SMG5	87	89.977	Macaca_mulatta
ENSMODG00000016901	SMG5	98	90.428	ENSMNEG00000044425	SMG5	87	89.977	Macaca_nemestrina
ENSMODG00000016901	SMG5	98	83.408	ENSMLEG00000041192	SMG5	87	82.960	Mandrillus_leucophaeus
ENSMODG00000016901	SMG5	56	56.747	ENSMZEG00005016543	smg5	80	56.530	Maylandia_zebra
ENSMODG00000016901	SMG5	98	64.897	ENSMZEG00005015815	smg5	88	65.904	Maylandia_zebra
ENSMODG00000016901	SMG5	62	43.630	ENSMAUG00000000043	-	96	43.847	Mesocricetus_auratus
ENSMODG00000016901	SMG5	98	86.727	ENSMAUG00000010381	Smg5	87	87.064	Mesocricetus_auratus
ENSMODG00000016901	SMG5	98	90.541	ENSMICG00000002257	SMG5	87	90.090	Microcebus_murinus
ENSMODG00000016901	SMG5	98	86.644	ENSMOCG00000016590	Smg5	89	86.308	Microtus_ochrogaster
ENSMODG00000016901	SMG5	54	48.497	ENSMOCG00000008423	-	84	49.190	Microtus_ochrogaster
ENSMODG00000016901	SMG5	98	58.081	ENSMMOG00000017199	smg5	88	58.384	Mola_mola
ENSMODG00000016901	SMG5	98	59.233	ENSMALG00000010375	smg5	88	60.444	Monopterus_albus
ENSMODG00000016901	SMG5	98	87.064	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSMODG00000016901	SMG5	98	87.289	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSMODG00000016901	SMG5	98	86.629	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSMODG00000016901	SMG5	98	87.177	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSMODG00000016901	SMG5	91	86.740	ENSMPUG00000004546	SMG5	86	85.401	Mustela_putorius_furo
ENSMODG00000016901	SMG5	98	88.242	ENSMLUG00000008518	SMG5	87	88.354	Myotis_lucifugus
ENSMODG00000016901	SMG5	98	89.077	ENSNGAG00000020706	Smg5	87	89.077	Nannospalax_galili
ENSMODG00000016901	SMG5	98	62.569	ENSNBRG00000004332	smg5	87	63.575	Neolamprologus_brichardi
ENSMODG00000016901	SMG5	98	90.315	ENSNLEG00000012439	SMG5	87	89.865	Nomascus_leucogenys
ENSMODG00000016901	SMG5	98	97.745	ENSMEUG00000012834	SMG5	87	97.745	Notamacropus_eugenii
ENSMODG00000016901	SMG5	98	87.838	ENSOPRG00000009152	SMG5	87	87.387	Ochotona_princeps
ENSMODG00000016901	SMG5	98	89.189	ENSODEG00000012237	SMG5	87	89.189	Octodon_degus
ENSMODG00000016901	SMG5	98	60.340	ENSONIG00000008632	smg5	88	61.284	Oreochromis_niloticus
ENSMODG00000016901	SMG5	96	90.046	ENSOCUG00000012886	SMG5	87	89.583	Oryctolagus_cuniculus
ENSMODG00000016901	SMG5	98	40.471	ENSOCUG00000023338	-	96	40.292	Oryctolagus_cuniculus
ENSMODG00000016901	SMG5	98	59.438	ENSORLG00000016239	smg5	88	61.735	Oryzias_latipes
ENSMODG00000016901	SMG5	98	65.807	ENSORLG00020013127	smg5	87	66.331	Oryzias_latipes_hni
ENSMODG00000016901	SMG5	98	65.583	ENSORLG00015019014	smg5	86	66.555	Oryzias_latipes_hsok
ENSMODG00000016901	SMG5	64	57.601	ENSOMEG00000021330	smg5	92	60.345	Oryzias_melastigma
ENSMODG00000016901	SMG5	98	89.414	ENSOGAG00000004966	SMG5	87	88.964	Otolemur_garnettii
ENSMODG00000016901	SMG5	98	88.176	ENSOARG00000005778	SMG5	87	89.189	Ovis_aries
ENSMODG00000016901	SMG5	97	45.201	ENSOARG00000011963	-	86	44.731	Ovis_aries
ENSMODG00000016901	SMG5	98	90.653	ENSPPAG00000011996	SMG5	87	90.203	Pan_paniscus
ENSMODG00000016901	SMG5	96	88.079	ENSPPRG00000011901	SMG5	87	87.384	Panthera_pardus
ENSMODG00000016901	SMG5	95	82.483	ENSPTIG00000007892	SMG5	86	81.671	Panthera_tigris_altaica
ENSMODG00000016901	SMG5	98	90.653	ENSPTRG00000049282	-	87	90.203	Pan_troglodytes
ENSMODG00000016901	SMG5	98	90.653	ENSPTRG00000023925	SMG5	87	90.203	Pan_troglodytes
ENSMODG00000016901	SMG5	98	90.541	ENSPANG00000011201	SMG5	87	90.090	Papio_anubis
ENSMODG00000016901	SMG5	98	65.714	ENSPKIG00000009402	smg5	87	65.708	Paramormyrops_kingsleyae
ENSMODG00000016901	SMG5	96	82.500	ENSPSIG00000015198	SMG5	87	82.273	Pelodiscus_sinensis
ENSMODG00000016901	SMG5	98	59.252	ENSPMGG00000010465	smg5	88	59.395	Periophthalmus_magnuspinnatus
ENSMODG00000016901	SMG5	63	45.870	ENSPEMG00000010022	-	95	44.425	Peromyscus_maniculatus_bairdii
ENSMODG00000016901	SMG5	98	87.177	ENSPEMG00000001819	Smg5	87	87.514	Peromyscus_maniculatus_bairdii
ENSMODG00000016901	SMG5	97	49.449	ENSPMAG00000000410	smg5	88	49.733	Petromyzon_marinus
ENSMODG00000016901	SMG5	98	97.973	ENSPCIG00000018938	SMG5	87	97.973	Phascolarctos_cinereus
ENSMODG00000016901	SMG5	98	64.615	ENSPMEG00000014105	smg5	87	65.642	Poecilia_mexicana
ENSMODG00000016901	SMG5	90	69.195	ENSPREG00000017713	smg5	88	60.993	Poecilia_reticulata
ENSMODG00000016901	SMG5	98	90.766	ENSPPYG00000000723	SMG5	87	90.315	Pongo_abelii
ENSMODG00000016901	SMG5	79	92.063	ENSPCAG00000008412	SMG5	75	92.063	Procavia_capensis
ENSMODG00000016901	SMG5	98	90.090	ENSPCOG00000004741	SMG5	87	89.640	Propithecus_coquereli
ENSMODG00000016901	SMG5	98	80.180	ENSPVAG00000016748	SMG5	87	80.518	Pteropus_vampyrus
ENSMODG00000016901	SMG5	98	60.040	ENSPNYG00000013397	smg5	88	60.939	Pundamilia_nyererei
ENSMODG00000016901	SMG5	98	62.037	ENSPNAG00000028363	smg5	88	62.319	Pygocentrus_nattereri
ENSMODG00000016901	SMG5	98	87.289	ENSRNOG00000019590	Smg5	87	87.402	Rattus_norvegicus
ENSMODG00000016901	SMG5	98	90.203	ENSRBIG00000027428	SMG5	87	89.752	Rhinopithecus_bieti
ENSMODG00000016901	SMG5	98	90.192	ENSRROG00000030035	SMG5	87	89.741	Rhinopithecus_roxellana
ENSMODG00000016901	SMG5	98	90.766	ENSSBOG00000033339	SMG5	87	90.315	Saimiri_boliviensis_boliviensis
ENSMODG00000016901	SMG5	73	41.954	ENSSHAG00000000935	-	97	38.164	Sarcophilus_harrisii
ENSMODG00000016901	SMG5	95	34.822	ENSSHAG00000009572	-	65	43.909	Sarcophilus_harrisii
ENSMODG00000016901	SMG5	83	40.800	ENSSHAG00000000561	-	84	40.964	Sarcophilus_harrisii
ENSMODG00000016901	SMG5	96	97.572	ENSSHAG00000014163	SMG5	87	97.572	Sarcophilus_harrisii
ENSMODG00000016901	SMG5	98	66.853	ENSSFOG00015024175	smg5	87	67.188	Scleropages_formosus
ENSMODG00000016901	SMG5	98	60.883	ENSSMAG00000013059	smg5	88	60.381	Scophthalmus_maximus
ENSMODG00000016901	SMG5	98	59.078	ENSSDUG00000007122	smg5	81	76.512	Seriola_dumerili
ENSMODG00000016901	SMG5	98	59.113	ENSSLDG00000011418	smg5	81	77.465	Seriola_lalandi_dorsalis
ENSMODG00000016901	SMG5	98	76.351	ENSSARG00000012484	SMG5	97	75.901	Sorex_araneus
ENSMODG00000016901	SMG5	91	79.627	ENSSPUG00000002260	SMG5	89	79.162	Sphenodon_punctatus
ENSMODG00000016901	SMG5	99	64.418	ENSSPAG00000014266	smg5	87	64.699	Stegastes_partitus
ENSMODG00000016901	SMG5	58	37.288	ENSSSCG00000037182	-	85	37.524	Sus_scrofa
ENSMODG00000016901	SMG5	98	90.315	ENSSSCG00000006490	-	87	89.865	Sus_scrofa
ENSMODG00000016901	SMG5	98	70.429	ENSSSCG00000039308	-	88	70.880	Sus_scrofa
ENSMODG00000016901	SMG5	97	82.899	ENSTGUG00000003748	-	87	82.701	Taeniopygia_guttata
ENSMODG00000016901	SMG5	90	74.194	ENSTRUG00000012580	smg5	86	64.706	Takifugu_rubripes
ENSMODG00000016901	SMG5	98	66.073	ENSTNIG00000010303	smg5	81	74.541	Tetraodon_nigroviridis
ENSMODG00000016901	SMG5	96	86.338	ENSTTRG00000001401	SMG5	86	85.878	Tursiops_truncatus
ENSMODG00000016901	SMG5	98	87.725	ENSUAMG00000013721	SMG5	87	86.486	Ursus_americanus
ENSMODG00000016901	SMG5	96	82.814	ENSUMAG00000018041	SMG5	84	81.546	Ursus_maritimus
ENSMODG00000016901	SMG5	95	79.954	ENSVPAG00000009446	SMG5	87	79.490	Vicugna_pacos
ENSMODG00000016901	SMG5	98	88.626	ENSVVUG00000005887	SMG5	87	87.950	Vulpes_vulpes
ENSMODG00000016901	SMG5	72	68.675	ENSXETG00000033791	SMG5	83	67.064	Xenopus_tropicalis
ENSMODG00000016901	SMG5	54	78.571	ENSXCOG00000004379	smg5	82	81.132	Xiphophorus_couchianus
ENSMODG00000016901	SMG5	98	64.751	ENSXMAG00000013499	smg5	87	65.632	Xiphophorus_maculatus