EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000017067 (Gene tree)
Gene ID: 100027072
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 162546 bases
Position: chr4:431093920-431256465
Accession: 100027072
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	1	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	2	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	3	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	4	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	5	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	6	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	7	8
ENSMODP00000021295	PUF	PF00806.19	1.5e-72	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000021669	PUM1-201	5716	XM_001367400	ENSMODP00000021295	1190 (aa)	XP_001367437	F6XHB9

Gene Model

Click here to download ENSMODG00000017067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000017067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000017067	PUM1	89	75.208	ENSMODG00000009811	PUM2	100	74.561

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000017067	PUM1	100	97.899	ENSG00000134644	PUM1	100	97.899	Homo_sapiens
ENSMODG00000017067	PUM1	85	91.084	ENSAPOG00000021632	pum1	100	91.325	Acanthochromis_polyacanthus
ENSMODG00000017067	PUM1	100	97.567	ENSAMEG00000017656	PUM1	97	97.567	Ailuropoda_melanoleuca
ENSMODG00000017067	PUM1	100	74.440	ENSACIG00000021013	pum1	100	76.364	Amphilophus_citrinellus
ENSMODG00000017067	PUM1	85	91.084	ENSAOCG00000003944	pum1	100	91.325	Amphiprion_ocellaris
ENSMODG00000017067	PUM1	85	91.084	ENSAPEG00000014550	pum1	100	91.325	Amphiprion_percula
ENSMODG00000017067	PUM1	85	91.084	ENSATEG00000016004	pum1	100	91.325	Anabas_testudineus
ENSMODG00000017067	PUM1	100	97.649	ENSAPLG00000009351	PUM1	100	97.649	Anas_platyrhynchos
ENSMODG00000017067	PUM1	100	95.882	ENSACAG00000000682	PUM1	98	95.798	Anolis_carolinensis
ENSMODG00000017067	PUM1	100	97.397	ENSANAG00000027865	PUM1	100	97.397	Aotus_nancymaae
ENSMODG00000017067	PUM1	89	76.574	ENSACLG00000019354	pum1	100	78.743	Astatotilapia_calliptera
ENSMODG00000017067	PUM1	100	78.715	ENSAMXG00000020607	pum1	96	78.297	Astyanax_mexicanus
ENSMODG00000017067	PUM1	100	97.647	ENSBTAG00000018979	PUM1	100	98.309	Bos_taurus
ENSMODG00000017067	PUM1	100	97.565	ENSCJAG00000006035	PUM1	100	97.585	Callithrix_jacchus
ENSMODG00000017067	PUM1	100	95.382	ENSCAFG00000011205	PUM1	100	95.382	Canis_familiaris
ENSMODG00000017067	PUM1	92	95.909	ENSCAFG00020024616	PUM1	99	97.251	Canis_lupus_dingo
ENSMODG00000017067	PUM1	100	97.647	ENSCHIG00000012952	PUM1	100	97.826	Capra_hircus
ENSMODG00000017067	PUM1	100	97.481	ENSTSYG00000008868	PUM1	100	97.481	Carlito_syrichta
ENSMODG00000017067	PUM1	100	97.481	ENSCPOG00000031613	PUM1	100	97.484	Cavia_porcellus
ENSMODG00000017067	PUM1	100	95.630	ENSCATG00000017991	PUM1	100	98.068	Cercocebus_atys
ENSMODG00000017067	PUM1	100	97.565	ENSCLAG00000007662	PUM1	100	97.589	Chinchilla_lanigera
ENSMODG00000017067	PUM1	100	96.922	ENSCSAG00000001028	PUM1	100	96.922	Chlorocebus_sabaeus
ENSMODG00000017067	PUM1	93	95.122	ENSCHOG00000010245	PUM1	93	95.122	Choloepus_hoffmanni
ENSMODG00000017067	PUM1	100	98.151	ENSCPBG00000009288	PUM1	100	98.551	Chrysemys_picta_bellii
ENSMODG00000017067	PUM1	100	97.899	ENSCANG00000042606	PUM1	100	97.637	Colobus_angolensis_palliatus
ENSMODG00000017067	PUM1	100	97.143	ENSCGRG00001024949	Pum1	100	97.275	Cricetulus_griseus_chok1gshd
ENSMODG00000017067	PUM1	100	97.143	ENSCGRG00000014197	Pum1	100	97.275	Cricetulus_griseus_crigri
ENSMODG00000017067	PUM1	89	75.856	ENSCSEG00000015981	pum1	100	77.911	Cynoglossus_semilaevis
ENSMODG00000017067	PUM1	100	74.025	ENSCVAG00000007043	pum1	100	75.808	Cyprinodon_variegatus
ENSMODG00000017067	PUM1	100	79.048	ENSDARG00000099256	pum1	100	78.881	Danio_rerio
ENSMODG00000017067	PUM1	100	97.397	ENSDNOG00000010939	PUM1	100	97.397	Dasypus_novemcinctus
ENSMODG00000017067	PUM1	85	97.101	ENSDORG00000001875	Pum1	100	97.101	Dipodomys_ordii
ENSMODG00000017067	PUM1	88	92.780	ENSETEG00000004355	PUM1	87	92.780	Echinops_telfairi
ENSMODG00000017067	PUM1	100	97.647	ENSEASG00005010813	PUM1	100	97.647	Equus_asinus_asinus
ENSMODG00000017067	PUM1	100	97.481	ENSECAG00000021369	PUM1	100	97.481	Equus_caballus
ENSMODG00000017067	PUM1	76	98.667	ENSEEUG00000003871	PUM1	74	98.667	Erinaceus_europaeus
ENSMODG00000017067	PUM1	100	75.802	ENSELUG00000002409	pum1	100	82.324	Esox_lucius
ENSMODG00000017067	PUM1	100	97.817	ENSFCAG00000010374	PUM1	100	98.309	Felis_catus
ENSMODG00000017067	PUM1	100	96.405	ENSFALG00000001214	PUM1	97	96.405	Ficedula_albicollis
ENSMODG00000017067	PUM1	100	97.481	ENSFDAG00000011319	PUM1	100	97.484	Fukomys_damarensis
ENSMODG00000017067	PUM1	100	97.817	ENSGALG00000042598	PUM1	99	99.393	Gallus_gallus
ENSMODG00000017067	PUM1	89	87.586	ENSGAFG00000015617	pum1	100	90.843	Gambusia_affinis
ENSMODG00000017067	PUM1	100	74.752	ENSGACG00000005717	pum1	100	76.049	Gasterosteus_aculeatus
ENSMODG00000017067	PUM1	100	97.817	ENSGAGG00000001290	PUM1	99	99.190	Gopherus_agassizii
ENSMODG00000017067	PUM1	100	97.899	ENSGGOG00000011983	PUM1	100	97.799	Gorilla_gorilla
ENSMODG00000017067	PUM1	100	74.440	ENSHBUG00000018718	pum1	100	76.305	Haplochromis_burtoni
ENSMODG00000017067	PUM1	100	97.313	ENSHGLG00000013819	Pum1	100	97.379	Heterocephalus_glaber_female
ENSMODG00000017067	PUM1	100	97.313	ENSHGLG00100008621	Pum1	100	97.379	Heterocephalus_glaber_male
ENSMODG00000017067	PUM1	89	75.162	ENSHCOG00000005149	pum1	100	74.977	Hippocampus_comes
ENSMODG00000017067	PUM1	100	77.159	ENSIPUG00000020421	pum1	100	77.344	Ictalurus_punctatus
ENSMODG00000017067	PUM1	100	97.647	ENSSTOG00000010757	PUM1	100	97.647	Ictidomys_tridecemlineatus
ENSMODG00000017067	PUM1	100	97.395	ENSJJAG00000000530	Pum1	100	97.395	Jaculus_jaculus
ENSMODG00000017067	PUM1	100	74.191	ENSKMAG00000003481	pum1	100	75.973	Kryptolebias_marmoratus
ENSMODG00000017067	PUM1	100	74.065	ENSLBEG00000002527	pum1	100	75.851	Labrus_bergylta
ENSMODG00000017067	PUM1	100	86.522	ENSLACG00000017188	PUM1	99	86.556	Latimeria_chalumnae
ENSMODG00000017067	PUM1	100	87.656	ENSLOCG00000005210	pum1	99	87.990	Lepisosteus_oculatus
ENSMODG00000017067	PUM1	100	97.481	ENSLAFG00000003178	PUM1	100	97.481	Loxodonta_africana
ENSMODG00000017067	PUM1	100	97.490	ENSMFAG00000010291	PUM1	100	98.068	Macaca_fascicularis
ENSMODG00000017067	PUM1	100	97.490	ENSMMUG00000013520	PUM1	100	97.799	Macaca_mulatta
ENSMODG00000017067	PUM1	100	97.899	ENSMNEG00000034639	PUM1	100	97.899	Macaca_nemestrina
ENSMODG00000017067	PUM1	100	97.899	ENSMLEG00000038743	PUM1	100	97.637	Mandrillus_leucophaeus
ENSMODG00000017067	PUM1	100	74.689	ENSMAMG00000011606	pum1	100	76.553	Mastacembelus_armatus
ENSMODG00000017067	PUM1	100	74.440	ENSMZEG00005005834	pum1	100	76.305	Maylandia_zebra
ENSMODG00000017067	PUM1	100	97.565	ENSMGAG00000000724	PUM1	100	97.565	Meleagris_gallopavo
ENSMODG00000017067	PUM1	100	97.145	ENSMAUG00000022090	Pum1	100	97.170	Mesocricetus_auratus
ENSMODG00000017067	PUM1	99	95.458	ENSMICG00000012213	-	99	95.458	Microcebus_murinus
ENSMODG00000017067	PUM1	100	97.649	ENSMICG00000007713	-	100	97.826	Microcebus_murinus
ENSMODG00000017067	PUM1	100	97.061	ENSMOCG00000015463	Pum1	100	97.065	Microtus_ochrogaster
ENSMODG00000017067	PUM1	89	87.816	ENSMMOG00000019817	pum1	100	91.084	Mola_mola
ENSMODG00000017067	PUM1	86	88.046	ENSMALG00000016399	pum1	100	91.325	Monopterus_albus
ENSMODG00000017067	PUM1	100	97.059	MGP_CAROLIEiJ_G0026549	Pum1	100	97.059	Mus_caroli
ENSMODG00000017067	PUM1	100	97.143	ENSMUSG00000028580	Pum1	100	97.143	Mus_musculus
ENSMODG00000017067	PUM1	100	96.975	MGP_PahariEiJ_G0028881	Pum1	100	96.975	Mus_pahari
ENSMODG00000017067	PUM1	100	97.059	MGP_SPRETEiJ_G0027529	Pum1	100	97.059	Mus_spretus
ENSMODG00000017067	PUM1	100	97.647	ENSMPUG00000015454	PUM1	100	97.647	Mustela_putorius_furo
ENSMODG00000017067	PUM1	100	97.397	ENSMLUG00000006490	PUM1	100	97.397	Myotis_lucifugus
ENSMODG00000017067	PUM1	100	97.395	ENSNGAG00000002378	Pum1	100	97.395	Nannospalax_galili
ENSMODG00000017067	PUM1	80	81.088	ENSNBRG00000010689	pum1	100	82.737	Neolamprologus_brichardi
ENSMODG00000017067	PUM1	100	96.555	ENSNLEG00000001151	PUM1	100	95.862	Nomascus_leucogenys
ENSMODG00000017067	PUM1	82	99.662	ENSMEUG00000000976	-	72	99.662	Notamacropus_eugenii
ENSMODG00000017067	PUM1	84	98.131	ENSOPRG00000001776	PUM1	73	98.131	Ochotona_princeps
ENSMODG00000017067	PUM1	100	97.479	ENSODEG00000003465	PUM1	100	97.484	Octodon_degus
ENSMODG00000017067	PUM1	100	74.693	ENSONIG00000002290	pum1	100	76.636	Oreochromis_niloticus
ENSMODG00000017067	PUM1	81	77.653	ENSOANG00000004902	-	100	76.122	Ornithorhynchus_anatinus
ENSMODG00000017067	PUM1	100	97.061	ENSOCUG00000008641	PUM1	99	97.061	Oryctolagus_cuniculus
ENSMODG00000017067	PUM1	100	75.021	ENSORLG00000011482	pum1	100	76.135	Oryzias_latipes
ENSMODG00000017067	PUM1	100	75.103	ENSORLG00020019461	pum1	100	76.135	Oryzias_latipes_hni
ENSMODG00000017067	PUM1	100	75.103	ENSORLG00015011375	pum1	100	76.218	Oryzias_latipes_hsok
ENSMODG00000017067	PUM1	100	94.552	ENSOGAG00000011063	PUM1	100	94.635	Otolemur_garnettii
ENSMODG00000017067	PUM1	100	96.809	ENSOARG00000001899	PUM1	100	97.826	Ovis_aries
ENSMODG00000017067	PUM1	100	97.899	ENSPPAG00000044003	PUM1	100	97.799	Pan_paniscus
ENSMODG00000017067	PUM1	100	97.899	ENSPPRG00000001370	PUM1	100	97.637	Panthera_pardus
ENSMODG00000017067	PUM1	100	97.731	ENSPTIG00000010798	PUM1	100	97.388	Panthera_tigris_altaica
ENSMODG00000017067	PUM1	100	97.899	ENSPTRG00000000453	PUM1	100	97.799	Pan_troglodytes
ENSMODG00000017067	PUM1	100	97.899	ENSPANG00000016338	PUM1	100	98.068	Papio_anubis
ENSMODG00000017067	PUM1	100	78.843	ENSPKIG00000010578	pum1	100	78.512	Paramormyrops_kingsleyae
ENSMODG00000017067	PUM1	100	98.151	ENSPSIG00000014118	PUM1	100	98.151	Pelodiscus_sinensis
ENSMODG00000017067	PUM1	80	79.559	ENSPMGG00000005836	pum1	100	81.197	Periophthalmus_magnuspinnatus
ENSMODG00000017067	PUM1	100	97.229	ENSPEMG00000010009	Pum1	100	97.229	Peromyscus_maniculatus_bairdii
ENSMODG00000017067	PUM1	100	100.000	ENSPCIG00000014151	PUM1	100	99.751	Phascolarctos_cinereus
ENSMODG00000017067	PUM1	94	77.165	ENSPFOG00000007289	pum1	99	83.028	Poecilia_formosa
ENSMODG00000017067	PUM1	100	73.387	ENSPLAG00000007256	pum1	100	77.847	Poecilia_latipinna
ENSMODG00000017067	PUM1	90	77.348	ENSPMEG00000019543	pum1	99	78.217	Poecilia_mexicana
ENSMODG00000017067	PUM1	100	74.523	ENSPREG00000005195	pum1	100	80.387	Poecilia_reticulata
ENSMODG00000017067	PUM1	100	95.964	ENSPPYG00000001621	PUM1	100	95.964	Pongo_abelii
ENSMODG00000017067	PUM1	78	99.074	ENSPCAG00000001979	PUM1	74	99.074	Procavia_capensis
ENSMODG00000017067	PUM1	100	97.649	ENSPCOG00000004398	PUM1	100	97.826	Propithecus_coquereli
ENSMODG00000017067	PUM1	100	95.630	ENSPVAG00000005207	PUM1	97	95.546	Pteropus_vampyrus
ENSMODG00000017067	PUM1	100	74.523	ENSPNYG00000009518	pum1	100	81.928	Pundamilia_nyererei
ENSMODG00000017067	PUM1	100	78.881	ENSPNAG00000026728	pum1	100	79.771	Pygocentrus_nattereri
ENSMODG00000017067	PUM1	100	96.975	ENSRNOG00000011709	Pum1	100	96.975	Rattus_norvegicus
ENSMODG00000017067	PUM1	100	97.899	ENSRBIG00000042521	PUM1	100	98.068	Rhinopithecus_bieti
ENSMODG00000017067	PUM1	100	97.899	ENSRROG00000020156	PUM1	100	97.731	Rhinopithecus_roxellana
ENSMODG00000017067	PUM1	100	97.649	ENSSBOG00000032037	PUM1	100	97.649	Saimiri_boliviensis_boliviensis
ENSMODG00000017067	PUM1	100	99.580	ENSSHAG00000010918	PUM1	100	99.580	Sarcophilus_harrisii
ENSMODG00000017067	PUM1	100	74.772	ENSSMAG00000010918	pum1	100	91.325	Scophthalmus_maximus
ENSMODG00000017067	PUM1	100	74.523	ENSSDUG00000009021	pum1	100	76.636	Seriola_dumerili
ENSMODG00000017067	PUM1	95	75.726	ENSSLDG00000009667	pum1	100	78.261	Seriola_lalandi_dorsalis
ENSMODG00000017067	PUM1	94	96.916	ENSSARG00000003055	PUM1	91	96.916	Sorex_araneus
ENSMODG00000017067	PUM1	100	97.479	ENSSPUG00000006267	PUM1	100	97.479	Sphenodon_punctatus
ENSMODG00000017067	PUM1	85	91.084	ENSSPAG00000016636	pum1	100	91.325	Stegastes_partitus
ENSMODG00000017067	PUM1	100	97.901	ENSSSCG00000003591	PUM1	100	98.309	Sus_scrofa
ENSMODG00000017067	PUM1	100	74.419	ENSTRUG00000013121	pum1	100	82.367	Takifugu_rubripes
ENSMODG00000017067	PUM1	100	74.606	ENSTNIG00000016983	pum1	99	76.388	Tetraodon_nigroviridis
ENSMODG00000017067	PUM1	87	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSMODG00000017067	PUM1	92	98.086	ENSTTRG00000007436	PUM1	90	98.086	Tursiops_truncatus
ENSMODG00000017067	PUM1	99	97.145	ENSUAMG00000018262	-	100	97.145	Ursus_americanus
ENSMODG00000017067	PUM1	95	98.309	ENSUMAG00000009211	PUM1	100	98.309	Ursus_maritimus
ENSMODG00000017067	PUM1	92	98.134	ENSVPAG00000005902	PUM1	92	98.134	Vicugna_pacos
ENSMODG00000017067	PUM1	100	97.649	ENSVVUG00000014631	PUM1	100	98.309	Vulpes_vulpes
ENSMODG00000017067	PUM1	100	87.752	ENSXETG00000012904	pum1	99	86.997	Xenopus_tropicalis
ENSMODG00000017067	PUM1	100	73.859	ENSXMAG00000002945	pum1	100	77.743	Xiphophorus_maculatus