EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000017657 (Gene tree)
Gene ID: 100025062
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 15831 bases
Position: chr4:423548404-423564234
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000022014	PABP	PF00658.18	2.3e-31	1	1
ENSMODP00000022014	RRM_5	PF13893.6	1.4e-08	1	1
ENSMODP00000022014	RRM_1	PF00076.22	8.1e-90	1	4
ENSMODP00000022014	RRM_1	PF00076.22	8.1e-90	2	4
ENSMODP00000022014	RRM_1	PF00076.22	8.1e-90	3	4
ENSMODP00000022014	RRM_1	PF00076.22	8.1e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000022401	-	2020	-	ENSMODP00000022014	656 (aa)	-	F6YJX5

Gene Model

Click here to download ENSMODG00000017657's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03013	RNA transport	KEGG
mdo03015	mRNA surveillance pathway	KEGG
mdo03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000017657's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000017657	-	56	33.775	ENSMODG00000005041	ELAVL1	78	33.775
ENSMODG00000017657	-	98	61.562	ENSMODG00000015024	-	97	61.978
ENSMODG00000017657	-	56	30.921	ENSMODG00000001300	-	61	30.921
ENSMODG00000017657	-	99	73.556	ENSMODG00000017105	-	98	74.189
ENSMODG00000017657	-	99	71.901	ENSMODG00000012040	-	97	73.639
ENSMODG00000017657	-	57	76.901	ENSMODG00000018051	-	91	76.901
ENSMODG00000017657	-	56	36.145	ENSMODG00000003936	ELAVL2	83	36.145
ENSMODG00000017657	-	50	38.636	ENSMODG00000019913	CELF1	66	39.535
ENSMODG00000017657	-	99	67.588	ENSMODG00000013156	-	98	68.266
ENSMODG00000017657	-	99	76.807	ENSMODG00000006222	PABPC1	98	76.840
ENSMODG00000017657	-	96	64.835	ENSMODG00000016198	PABPC1L	99	64.835
ENSMODG00000017657	-	58	35.833	ENSMODG00000006653	ELAVL3	85	35.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000017657	-	100	88.788	ENSG00000090621	PABPC4	100	99.225	Homo_sapiens
ENSMODG00000017657	-	99	83.206	ENSAPOG00000001161	pabpc4	97	83.975	Acanthochromis_polyacanthus
ENSMODG00000017657	-	100	88.636	ENSAMEG00000011535	-	98	89.043	Ailuropoda_melanoleuca
ENSMODG00000017657	-	99	51.080	ENSAMEG00000015083	-	97	51.177	Ailuropoda_melanoleuca
ENSMODG00000017657	-	100	82.905	ENSACIG00000023343	pabpc4	97	84.129	Amphilophus_citrinellus
ENSMODG00000017657	-	99	83.053	ENSAOCG00000021529	pabpc4	89	93.512	Amphiprion_ocellaris
ENSMODG00000017657	-	99	83.053	ENSAPEG00000019196	pabpc4	97	83.821	Amphiprion_percula
ENSMODG00000017657	-	99	82.927	ENSATEG00000007402	pabpc4	97	83.692	Anabas_testudineus
ENSMODG00000017657	-	100	89.482	ENSAPLG00000009729	-	100	89.482	Anas_platyrhynchos
ENSMODG00000017657	-	99	88.034	ENSACAG00000002544	PABPC4	100	88.034	Anolis_carolinensis
ENSMODG00000017657	-	100	88.788	ENSANAG00000025079	PABPC4	98	89.198	Aotus_nancymaae
ENSMODG00000017657	-	100	83.056	ENSACLG00000019558	pabpc4	97	84.284	Astatotilapia_calliptera
ENSMODG00000017657	-	100	76.970	ENSAMXG00000018779	pabpc4	98	77.932	Astyanax_mexicanus
ENSMODG00000017657	-	100	86.930	ENSBTAG00000017125	PABPC4	98	87.771	Bos_taurus
ENSMODG00000017657	-	55	85.629	ENSBTAG00000048536	-	93	85.629	Bos_taurus
ENSMODG00000017657	-	100	88.636	ENSCJAG00000002512	-	98	89.043	Callithrix_jacchus
ENSMODG00000017657	-	79	75.185	ENSCJAG00000045953	-	93	75.185	Callithrix_jacchus
ENSMODG00000017657	-	100	88.110	ENSCAFG00000003081	PABPC4	98	88.509	Canis_familiaris
ENSMODG00000017657	-	100	88.788	ENSCAFG00020004161	PABPC4	98	89.198	Canis_lupus_dingo
ENSMODG00000017657	-	100	88.939	ENSCHIG00000019398	-	98	89.352	Capra_hircus
ENSMODG00000017657	-	100	68.750	ENSCHIG00000023385	-	98	68.944	Capra_hircus
ENSMODG00000017657	-	100	88.939	ENSTSYG00000006532	PABPC4	98	89.352	Carlito_syrichta
ENSMODG00000017657	-	99	88.737	ENSCAPG00000015984	PABPC4	98	89.009	Cavia_aperea
ENSMODG00000017657	-	100	88.939	ENSCPOG00000009552	PABPC4	98	89.352	Cavia_porcellus
ENSMODG00000017657	-	100	88.636	ENSCCAG00000037306	PABPC4	98	89.043	Cebus_capucinus
ENSMODG00000017657	-	100	88.939	ENSCATG00000042164	PABPC4	98	89.352	Cercocebus_atys
ENSMODG00000017657	-	100	88.788	ENSCLAG00000011899	PABPC4	98	89.198	Chinchilla_lanigera
ENSMODG00000017657	-	100	88.939	ENSCSAG00000001135	PABPC4	98	89.352	Chlorocebus_sabaeus
ENSMODG00000017657	-	83	91.053	ENSCHOG00000005327	PABPC4	79	91.053	Choloepus_hoffmanni
ENSMODG00000017657	-	100	90.396	ENSCPBG00000001038	PABPC4	100	90.396	Chrysemys_picta_bellii
ENSMODG00000017657	-	99	88.786	ENSCANG00000034177	PABPC4	98	89.202	Colobus_angolensis_palliatus
ENSMODG00000017657	-	99	88.650	ENSCGRG00001018166	Pabpc4	97	88.889	Cricetulus_griseus_chok1gshd
ENSMODG00000017657	-	98	87.188	ENSCGRG00000009777	Pabpc4	97	87.421	Cricetulus_griseus_crigri
ENSMODG00000017657	-	99	81.970	ENSCSEG00000000130	pabpc4	97	83.051	Cynoglossus_semilaevis
ENSMODG00000017657	-	99	82.669	ENSCVAG00000019246	pabpc4	98	83.906	Cyprinodon_variegatus
ENSMODG00000017657	-	99	82.801	ENSDARG00000059259	pabpc4	100	83.438	Danio_rerio
ENSMODG00000017657	-	98	88.296	ENSDNOG00000018444	-	98	88.215	Dasypus_novemcinctus
ENSMODG00000017657	-	100	87.367	ENSDORG00000011581	Pabpc4	98	87.752	Dipodomys_ordii
ENSMODG00000017657	-	87	56.119	ENSETEG00000009172	-	97	56.071	Echinops_telfairi
ENSMODG00000017657	-	100	98.438	ENSETEG00000018453	-	82	98.438	Echinops_telfairi
ENSMODG00000017657	-	97	75.349	ENSEBUG00000013782	pabpc4	98	75.193	Eptatretus_burgeri
ENSMODG00000017657	-	99	74.006	ENSEBUG00000000992	pabpc4	99	73.806	Eptatretus_burgeri
ENSMODG00000017657	-	100	88.939	ENSEASG00005014119	PABPC4	98	89.352	Equus_asinus_asinus
ENSMODG00000017657	-	100	88.939	ENSECAG00000009396	PABPC4	98	89.352	Equus_caballus
ENSMODG00000017657	-	98	87.346	ENSEEUG00000002962	PABPC4	98	87.346	Erinaceus_europaeus
ENSMODG00000017657	-	99	82.192	ENSELUG00000003195	pabpc4	97	82.949	Esox_lucius
ENSMODG00000017657	-	100	88.939	ENSFCAG00000015254	-	98	89.352	Felis_catus
ENSMODG00000017657	-	100	89.177	ENSFALG00000000543	PABPC4	100	89.177	Ficedula_albicollis
ENSMODG00000017657	-	90	58.932	ENSFDAG00000010581	-	98	55.651	Fukomys_damarensis
ENSMODG00000017657	-	100	88.939	ENSFDAG00000020016	-	98	89.352	Fukomys_damarensis
ENSMODG00000017657	-	100	82.451	ENSFHEG00000007548	pabpc4	97	83.821	Fundulus_heteroclitus
ENSMODG00000017657	-	100	80.665	ENSGMOG00000019025	pabpc4	97	82.000	Gadus_morhua
ENSMODG00000017657	-	100	89.787	ENSGALG00000003800	PABPC4	100	89.787	Gallus_gallus
ENSMODG00000017657	-	100	83.308	ENSGAFG00000018195	pabpc4	98	96.667	Gambusia_affinis
ENSMODG00000017657	-	99	80.909	ENSGACG00000007179	pabpc4	97	82.126	Gasterosteus_aculeatus
ENSMODG00000017657	-	100	90.091	ENSGAGG00000001888	PABPC4	100	90.091	Gopherus_agassizii
ENSMODG00000017657	-	100	88.788	ENSGGOG00000004002	PABPC4	98	89.198	Gorilla_gorilla
ENSMODG00000017657	-	100	83.207	ENSHBUG00000020206	pabpc4	97	84.438	Haplochromis_burtoni
ENSMODG00000017657	-	100	88.788	ENSHGLG00000011162	PABPC4	98	89.198	Heterocephalus_glaber_female
ENSMODG00000017657	-	100	87.957	ENSHGLG00100001580	PABPC4	98	88.354	Heterocephalus_glaber_male
ENSMODG00000017657	-	99	82.246	ENSHCOG00000012694	pabpc4	97	83.488	Hippocampus_comes
ENSMODG00000017657	-	98	82.589	ENSIPUG00000016620	pabpc4	98	83.205	Ictalurus_punctatus
ENSMODG00000017657	-	100	87.367	ENSSTOG00000010416	PABPC4	98	87.752	Ictidomys_tridecemlineatus
ENSMODG00000017657	-	100	85.388	ENSJJAG00000007781	Pabpc4	98	86.357	Jaculus_jaculus
ENSMODG00000017657	-	100	81.269	ENSKMAG00000013597	pabpc4	97	82.769	Kryptolebias_marmoratus
ENSMODG00000017657	-	100	81.750	ENSLBEG00000013654	pabpc4	97	82.949	Labrus_bergylta
ENSMODG00000017657	-	100	86.818	ENSLACG00000011907	PABPC4	100	86.818	Latimeria_chalumnae
ENSMODG00000017657	-	100	84.488	ENSLOCG00000001877	pabpc4	98	85.538	Lepisosteus_oculatus
ENSMODG00000017657	-	100	88.788	ENSLAFG00000000151	PABPC4	98	89.198	Loxodonta_africana
ENSMODG00000017657	-	100	88.939	ENSMFAG00000041481	PABPC4	98	89.352	Macaca_fascicularis
ENSMODG00000017657	-	100	88.939	ENSMMUG00000007497	PABPC4	98	89.352	Macaca_mulatta
ENSMODG00000017657	-	100	88.939	ENSMNEG00000043054	PABPC4	98	89.352	Macaca_nemestrina
ENSMODG00000017657	-	100	88.939	ENSMLEG00000040716	PABPC4	98	89.352	Mandrillus_leucophaeus
ENSMODG00000017657	-	99	82.748	ENSMAMG00000010025	pabpc4	98	83.386	Mastacembelus_armatus
ENSMODG00000017657	-	100	82.905	ENSMZEG00005006141	pabpc4	97	84.129	Maylandia_zebra
ENSMODG00000017657	-	99	89.527	ENSMGAG00000005408	PABPC4	100	89.527	Meleagris_gallopavo
ENSMODG00000017657	-	73	96.875	ENSMAUG00000019763	-	81	96.739	Mesocricetus_auratus
ENSMODG00000017657	-	69	82.775	ENSMAUG00000001295	-	97	82.775	Mesocricetus_auratus
ENSMODG00000017657	-	55	82.036	ENSMAUG00000004089	-	89	82.036	Mesocricetus_auratus
ENSMODG00000017657	-	89	84.890	ENSMICG00000016633	-	97	88.936	Microcebus_murinus
ENSMODG00000017657	-	99	71.429	ENSMICG00000036729	-	98	70.805	Microcebus_murinus
ENSMODG00000017657	-	99	88.855	ENSMOCG00000006763	Pabpc4	97	89.043	Microtus_ochrogaster
ENSMODG00000017657	-	100	79.878	ENSMMOG00000002363	pabpc4	97	81.636	Mola_mola
ENSMODG00000017657	-	99	82.648	ENSMALG00000011017	pabpc4	97	83.410	Monopterus_albus
ENSMODG00000017657	-	100	88.030	MGP_CAROLIEiJ_G0026435	-	100	97.872	Mus_caroli
ENSMODG00000017657	-	99	75.424	MGP_CAROLIEiJ_G0024864	-	98	75.606	Mus_caroli
ENSMODG00000017657	-	100	88.182	ENSMUSG00000011257	Pabpc4	100	97.619	Mus_musculus
ENSMODG00000017657	-	99	88.326	MGP_PahariEiJ_G0028765	Pabpc4	100	98.582	Mus_pahari
ENSMODG00000017657	-	99	71.867	MGP_SPRETEiJ_G0027415	Pabpc4	100	97.872	Mus_spretus
ENSMODG00000017657	-	100	88.939	ENSMPUG00000014414	-	98	89.352	Mustela_putorius_furo
ENSMODG00000017657	-	96	47.619	ENSMPUG00000006836	-	100	47.619	Mustela_putorius_furo
ENSMODG00000017657	-	100	86.128	ENSMLUG00000012068	PABPC4	98	86.491	Myotis_lucifugus
ENSMODG00000017657	-	100	87.367	ENSNGAG00000018292	Pabpc4	98	87.752	Nannospalax_galili
ENSMODG00000017657	-	57	96.154	ENSNBRG00000009708	pabpc4	98	96.154	Neolamprologus_brichardi
ENSMODG00000017657	-	63	91.667	ENSNBRG00000010047	-	72	91.667	Neolamprologus_brichardi
ENSMODG00000017657	-	100	88.110	ENSNLEG00000011928	PABPC4	98	88.509	Nomascus_leucogenys
ENSMODG00000017657	-	82	95.238	ENSOPRG00000011984	PABPC4	87	95.238	Ochotona_princeps
ENSMODG00000017657	-	51	84.286	ENSODEG00000013457	-	100	84.286	Octodon_degus
ENSMODG00000017657	-	99	79.835	ENSODEG00000017434	-	97	80.169	Octodon_degus
ENSMODG00000017657	-	100	88.636	ENSODEG00000006592	-	98	89.043	Octodon_degus
ENSMODG00000017657	-	100	82.753	ENSONIG00000008176	pabpc4	97	83.975	Oreochromis_niloticus
ENSMODG00000017657	-	100	90.244	ENSOANG00000010001	PABPC4	100	90.244	Ornithorhynchus_anatinus
ENSMODG00000017657	-	96	88.942	ENSOCUG00000000562	PABPC4	88	88.942	Oryctolagus_cuniculus
ENSMODG00000017657	-	99	93.519	ENSORLG00000017479	pabpc4	96	93.231	Oryzias_latipes
ENSMODG00000017657	-	99	93.519	ENSORLG00020018644	pabpc4	96	93.231	Oryzias_latipes_hni
ENSMODG00000017657	-	99	93.519	ENSORLG00015015042	pabpc4	96	93.231	Oryzias_latipes_hsok
ENSMODG00000017657	-	99	81.985	ENSOMEG00000014410	pabpc4	97	82.589	Oryzias_melastigma
ENSMODG00000017657	-	100	86.818	ENSOGAG00000004067	PABPC4	98	87.654	Otolemur_garnettii
ENSMODG00000017657	-	100	88.939	ENSOARG00000020060	PABPC4	98	89.352	Ovis_aries
ENSMODG00000017657	-	100	88.788	ENSPPAG00000043625	PABPC4	98	89.198	Pan_paniscus
ENSMODG00000017657	-	100	88.939	ENSPPRG00000024727	PABPC4	98	89.352	Panthera_pardus
ENSMODG00000017657	-	100	88.939	ENSPTIG00000005829	PABPC4	98	89.352	Panthera_tigris_altaica
ENSMODG00000017657	-	100	88.788	ENSPTRG00000000573	PABPC4	98	89.198	Pan_troglodytes
ENSMODG00000017657	-	100	89.091	ENSPANG00000009484	PABPC4	98	89.506	Papio_anubis
ENSMODG00000017657	-	99	83.788	ENSPKIG00000025356	pabpc4	99	84.194	Paramormyrops_kingsleyae
ENSMODG00000017657	-	100	90.701	ENSPSIG00000016892	PABPC4	100	90.701	Pelodiscus_sinensis
ENSMODG00000017657	-	100	80.577	ENSPMGG00000009073	pabpc4	97	81.298	Periophthalmus_magnuspinnatus
ENSMODG00000017657	-	99	83.639	ENSPEMG00000024193	-	97	83.956	Peromyscus_maniculatus_bairdii
ENSMODG00000017657	-	100	87.727	ENSPEMG00000023569	-	98	88.117	Peromyscus_maniculatus_bairdii
ENSMODG00000017657	-	97	67.961	ENSPMAG00000007885	pabpc4	98	67.954	Petromyzon_marinus
ENSMODG00000017657	-	89	71.642	ENSPMAG00000002836	pabpc4	100	72.305	Petromyzon_marinus
ENSMODG00000017657	-	99	99.050	ENSPCIG00000020674	PABPC4	100	99.050	Phascolarctos_cinereus
ENSMODG00000017657	-	100	81.694	ENSPFOG00000002682	pabpc4	97	83.513	Poecilia_formosa
ENSMODG00000017657	-	100	81.846	ENSPLAG00000010112	pabpc4	97	83.667	Poecilia_latipinna
ENSMODG00000017657	-	99	82.290	ENSPMEG00000019739	pabpc4	97	83.513	Poecilia_mexicana
ENSMODG00000017657	-	100	82.451	ENSPREG00000001589	pabpc4	97	83.667	Poecilia_reticulata
ENSMODG00000017657	-	100	88.788	ENSPPYG00000001506	PABPC4	98	89.198	Pongo_abelii
ENSMODG00000017657	-	100	84.091	ENSPCAG00000003341	PABPC4	98	84.414	Procavia_capensis
ENSMODG00000017657	-	100	88.351	ENSPCOG00000023725	-	98	89.214	Propithecus_coquereli
ENSMODG00000017657	-	99	71.986	ENSPCOG00000025882	-	98	72.444	Propithecus_coquereli
ENSMODG00000017657	-	99	88.235	ENSPVAG00000002187	PABPC4	98	88.679	Pteropus_vampyrus
ENSMODG00000017657	-	100	83.056	ENSPNYG00000006134	pabpc4	97	84.284	Pundamilia_nyererei
ENSMODG00000017657	-	100	82.105	ENSPNAG00000024355	pabpc4	98	83.231	Pygocentrus_nattereri
ENSMODG00000017657	-	100	84.779	ENSRNOG00000028592	AABR07035074.1	98	85.116	Rattus_norvegicus
ENSMODG00000017657	-	100	86.910	ENSRNOG00000015642	Pabpc4	98	87.287	Rattus_norvegicus
ENSMODG00000017657	-	100	88.939	ENSRBIG00000039761	PABPC4	98	89.352	Rhinopithecus_bieti
ENSMODG00000017657	-	100	88.939	ENSRROG00000033355	PABPC4	98	89.352	Rhinopithecus_roxellana
ENSMODG00000017657	-	100	88.788	ENSSBOG00000026193	PABPC4	98	89.198	Saimiri_boliviensis_boliviensis
ENSMODG00000017657	-	100	95.274	ENSSHAG00000018139	PABPC4	100	95.274	Sarcophilus_harrisii
ENSMODG00000017657	-	99	84.543	ENSSFOG00015023514	pabpc4	97	84.776	Scleropages_formosus
ENSMODG00000017657	-	99	81.915	ENSSMAG00000009007	pabpc4	97	82.897	Scophthalmus_maximus
ENSMODG00000017657	-	99	82.595	ENSSDUG00000012683	pabpc4	97	83.359	Seriola_dumerili
ENSMODG00000017657	-	99	82.595	ENSSLDG00000013025	pabpc4	97	87.611	Seriola_lalandi_dorsalis
ENSMODG00000017657	-	100	81.970	ENSSARG00000000310	PABPC4	98	82.253	Sorex_araneus
ENSMODG00000017657	-	100	90.396	ENSSPUG00000003204	PABPC4	100	90.244	Sphenodon_punctatus
ENSMODG00000017657	-	99	82.595	ENSSPAG00000009252	pabpc4	97	93.065	Stegastes_partitus
ENSMODG00000017657	-	100	89.242	ENSSSCG00000003660	-	98	89.660	Sus_scrofa
ENSMODG00000017657	-	89	43.655	ENSSSCG00000036170	-	93	44.041	Sus_scrofa
ENSMODG00000017657	-	100	89.728	ENSTGUG00000001266	PABPC4	100	89.728	Taeniopygia_guttata
ENSMODG00000017657	-	99	82.979	ENSTRUG00000005907	pabpc4	97	84.129	Takifugu_rubripes
ENSMODG00000017657	-	99	79.421	ENSTNIG00000016902	pabpc4	97	79.907	Tetraodon_nigroviridis
ENSMODG00000017657	-	99	77.983	ENSTBEG00000009035	PABPC4	98	78.216	Tupaia_belangeri
ENSMODG00000017657	-	99	72.797	ENSTTRG00000014340	PABPC4	98	77.358	Tursiops_truncatus
ENSMODG00000017657	-	100	88.788	ENSUAMG00000000303	PABPC4	98	89.198	Ursus_americanus
ENSMODG00000017657	-	100	88.788	ENSUMAG00000019585	PABPC4	98	95.699	Ursus_maritimus
ENSMODG00000017657	-	80	72.941	ENSVPAG00000010041	PABPC4	73	72.941	Vicugna_pacos
ENSMODG00000017657	-	100	88.788	ENSVVUG00000005215	PABPC4	98	89.198	Vulpes_vulpes
ENSMODG00000017657	-	59	98.810	ENSXETG00000027221	-	100	98.810	Xenopus_tropicalis
ENSMODG00000017657	-	100	82.927	ENSXETG00000010946	pabpc4	100	82.927	Xenopus_tropicalis
ENSMODG00000017657	-	99	80.634	ENSXCOG00000013190	pabpc4	96	93.427	Xiphophorus_couchianus
ENSMODG00000017657	-	100	82.300	ENSXMAG00000019007	pabpc4	97	83.513	Xiphophorus_maculatus