EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000018248 (Gene tree)
Gene ID: 100019029
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 28765 bases
Position: chr8:113356493-113385257
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000022758	CSD	PF00313.22	8.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000023158	YBX3-201	3703	-	ENSMODP00000022758	309 (aa)	-	F6PG06

Gene Model

Click here to download ENSMODG00000018248's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000018248's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000018248	YBX3	91	84.028	ENSG00000060138	YBX3	89	97.561	Homo_sapiens
ENSMODG00000018248	YBX3	91	85.366	ENSAMEG00000009393	YBX3	81	85.664	Ailuropoda_melanoleuca
ENSMODG00000018248	YBX3	91	67.133	ENSAPLG00000003147	YBX3	100	67.133	Anas_platyrhynchos
ENSMODG00000018248	YBX3	58	88.235	ENSANAG00000033366	-	67	85.185	Aotus_nancymaae
ENSMODG00000018248	YBX3	91	83.333	ENSANAG00000024492	-	91	82.927	Aotus_nancymaae
ENSMODG00000018248	YBX3	91	83.624	ENSBTAG00000009663	YBX3	76	80.488	Bos_taurus
ENSMODG00000018248	YBX3	91	82.639	ENSCJAG00000021660	-	78	81.944	Callithrix_jacchus
ENSMODG00000018248	YBX3	61	80.328	ENSCJAG00000033824	-	74	77.941	Callithrix_jacchus
ENSMODG00000018248	YBX3	91	85.965	ENSCAFG00000013401	YBX3	87	87.273	Canis_familiaris
ENSMODG00000018248	YBX3	91	82.230	ENSCAFG00020006412	YBX3	76	82.230	Canis_lupus_dingo
ENSMODG00000018248	YBX3	91	83.624	ENSCHIG00000010863	YBX3	80	83.624	Capra_hircus
ENSMODG00000018248	YBX3	93	51.903	ENSTSYG00000035821	-	71	90.217	Carlito_syrichta
ENSMODG00000018248	YBX3	95	81.788	ENSTSYG00000004204	-	91	81.126	Carlito_syrichta
ENSMODG00000018248	YBX3	93	80.000	ENSCAPG00000015039	YBX3	99	78.964	Cavia_aperea
ENSMODG00000018248	YBX3	85	85.019	ENSCPOG00000011329	YBX3	84	83.566	Cavia_porcellus
ENSMODG00000018248	YBX3	91	82.986	ENSCCAG00000016469	YBX3	77	82.292	Cebus_capucinus
ENSMODG00000018248	YBX3	91	83.333	ENSCATG00000034411	YBX3	77	82.639	Cercocebus_atys
ENSMODG00000018248	YBX3	96	80.731	ENSCLAG00000016030	YBX3	96	82.993	Chinchilla_lanigera
ENSMODG00000018248	YBX3	91	83.681	ENSCSAG00000008744	YBX3	77	82.986	Chlorocebus_sabaeus
ENSMODG00000018248	YBX3	91	79.649	ENSCPBG00000014147	YBX3	80	79.649	Chrysemys_picta_bellii
ENSMODG00000018248	YBX3	91	82.986	ENSCANG00000036801	YBX3	91	82.578	Colobus_angolensis_palliatus
ENSMODG00000018248	YBX3	91	84.321	ENSCGRG00001016148	Ybx3	78	84.615	Cricetulus_griseus_chok1gshd
ENSMODG00000018248	YBX3	91	83.162	ENSCGRG00000004563	Ybx3	98	83.162	Cricetulus_griseus_crigri
ENSMODG00000018248	YBX3	91	84.912	ENSDORG00000009103	Ybx3	83	84.014	Dipodomys_ordii
ENSMODG00000018248	YBX3	90	76.923	ENSETEG00000002557	YBX3	99	74.386	Echinops_telfairi
ENSMODG00000018248	YBX3	91	80.139	ENSEASG00005014726	YBX3	76	80.139	Equus_asinus_asinus
ENSMODG00000018248	YBX3	91	82.927	ENSECAG00000013777	YBX3	77	82.927	Equus_caballus
ENSMODG00000018248	YBX3	90	82.456	ENSEEUG00000010415	YBX3	100	82.456	Erinaceus_europaeus
ENSMODG00000018248	YBX3	91	83.681	ENSFCAG00000027748	YBX3	77	82.986	Felis_catus
ENSMODG00000018248	YBX3	91	64.236	ENSFALG00000003661	YBX3	100	64.437	Ficedula_albicollis
ENSMODG00000018248	YBX3	91	78.169	ENSFDAG00000021192	YBX3	97	77.632	Fukomys_damarensis
ENSMODG00000018248	YBX3	83	79.592	ENSGALG00000031890	YBX3	74	57.746	Gallus_gallus
ENSMODG00000018248	YBX3	91	79.298	ENSGAGG00000017780	YBX3	80	79.298	Gopherus_agassizii
ENSMODG00000018248	YBX3	91	84.028	ENSGGOG00000001352	YBX3	77	83.333	Gorilla_gorilla
ENSMODG00000018248	YBX3	90	69.825	ENSHGLG00000014798	-	89	69.508	Heterocephalus_glaber_female
ENSMODG00000018248	YBX3	85	78.277	ENSHGLG00000015495	-	78	76.226	Heterocephalus_glaber_female
ENSMODG00000018248	YBX3	61	87.500	ENSHGLG00100003589	YBX3	94	61.794	Heterocephalus_glaber_male
ENSMODG00000018248	YBX3	92	79.167	ENSSTOG00000032577	-	81	79.861	Ictidomys_tridecemlineatus
ENSMODG00000018248	YBX3	94	79.461	ENSSTOG00000002108	-	90	78.000	Ictidomys_tridecemlineatus
ENSMODG00000018248	YBX3	91	61.034	ENSJJAG00000014239	Ybx3	91	83.544	Jaculus_jaculus
ENSMODG00000018248	YBX3	91	86.063	ENSLAFG00000017247	YBX3	85	81.119	Loxodonta_africana
ENSMODG00000018248	YBX3	91	83.681	ENSMFAG00000039369	YBX3	77	82.986	Macaca_fascicularis
ENSMODG00000018248	YBX3	91	83.681	ENSMMUG00000022469	YBX3	88	83.275	Macaca_mulatta
ENSMODG00000018248	YBX3	91	83.681	ENSMNEG00000045109	YBX3	77	82.986	Macaca_nemestrina
ENSMODG00000018248	YBX3	93	84.354	ENSMLEG00000033618	YBX3	83	84.354	Mandrillus_leucophaeus
ENSMODG00000018248	YBX3	83	80.137	ENSMGAG00000014224	YBX3	100	63.380	Meleagris_gallopavo
ENSMODG00000018248	YBX3	93	82.818	ENSMAUG00000012185	Ybx3	90	82.818	Mesocricetus_auratus
ENSMODG00000018248	YBX3	75	79.861	ENSMICG00000031459	-	72	79.861	Microcebus_murinus
ENSMODG00000018248	YBX3	91	86.063	ENSMICG00000038002	-	77	86.063	Microcebus_murinus
ENSMODG00000018248	YBX3	91	83.624	ENSMOCG00000016291	Ybx3	93	83.916	Microtus_ochrogaster
ENSMODG00000018248	YBX3	91	83.624	MGP_CAROLIEiJ_G0028947	Ybx3	78	83.916	Mus_caroli
ENSMODG00000018248	YBX3	91	83.972	ENSMUSG00000030189	Ybx3	78	84.266	Mus_musculus
ENSMODG00000018248	YBX3	91	84.321	MGP_PahariEiJ_G0022709	Ybx3	78	84.615	Mus_pahari
ENSMODG00000018248	YBX3	91	83.972	MGP_SPRETEiJ_G0029994	Ybx3	78	84.266	Mus_spretus
ENSMODG00000018248	YBX3	91	67.458	ENSMPUG00000011810	YBX3	77	65.763	Mustela_putorius_furo
ENSMODG00000018248	YBX3	84	82.593	ENSMLUG00000007476	YBX3	100	80.370	Myotis_lucifugus
ENSMODG00000018248	YBX3	90	80.351	ENSNGAG00000000710	Ybx3	88	60.284	Nannospalax_galili
ENSMODG00000018248	YBX3	91	81.597	ENSNLEG00000034844	YBX3	81	79.514	Nomascus_leucogenys
ENSMODG00000018248	YBX3	55	84.706	ENSMEUG00000002507	-	81	84.706	Notamacropus_eugenii
ENSMODG00000018248	YBX3	85	81.579	ENSODEG00000017957	YBX3	84	80.070	Octodon_degus
ENSMODG00000018248	YBX3	91	80.139	ENSOCUG00000001889	YBX3	83	80.139	Oryctolagus_cuniculus
ENSMODG00000018248	YBX3	91	82.653	ENSOGAG00000013245	YBX3	78	82.653	Otolemur_garnettii
ENSMODG00000018248	YBX3	91	74.830	ENSOARG00000020919	YBX3	96	73.630	Ovis_aries
ENSMODG00000018248	YBX3	91	84.028	ENSPPAG00000039068	YBX3	80	83.333	Pan_paniscus
ENSMODG00000018248	YBX3	91	84.028	ENSPPRG00000005859	YBX3	77	83.333	Panthera_pardus
ENSMODG00000018248	YBX3	91	85.965	ENSPTIG00000005322	YBX3	85	82.895	Panthera_tigris_altaica
ENSMODG00000018248	YBX3	91	84.028	ENSPTRG00000004681	YBX3	77	83.333	Pan_troglodytes
ENSMODG00000018248	YBX3	91	83.333	ENSPANG00000010280	YBX3	77	82.639	Papio_anubis
ENSMODG00000018248	YBX3	62	98.837	ENSPSIG00000009247	YBX3	92	98.837	Pelodiscus_sinensis
ENSMODG00000018248	YBX3	91	83.972	ENSPEMG00000012132	-	90	84.266	Peromyscus_maniculatus_bairdii
ENSMODG00000018248	YBX3	64	97.727	ENSPEMG00000010391	-	81	61.837	Peromyscus_maniculatus_bairdii
ENSMODG00000018248	YBX3	82	89.370	ENSPCIG00000029949	YBX3	100	89.370	Phascolarctos_cinereus
ENSMODG00000018248	YBX3	91	83.681	ENSPPYG00000004279	YBX3	77	82.986	Pongo_abelii
ENSMODG00000018248	YBX3	66	88.406	ENSPCAG00000001397	YBX3	70	88.177	Procavia_capensis
ENSMODG00000018248	YBX3	55	84.483	ENSPCOG00000011663	YBX3	67	84.483	Propithecus_coquereli
ENSMODG00000018248	YBX3	69	88.018	ENSPVAG00000006740	YBX3	54	88.235	Pteropus_vampyrus
ENSMODG00000018248	YBX3	91	84.669	ENSRNOG00000005480	Ybx3	78	84.965	Rattus_norvegicus
ENSMODG00000018248	YBX3	91	82.986	ENSRBIG00000039208	YBX3	77	82.292	Rhinopithecus_bieti
ENSMODG00000018248	YBX3	91	82.986	ENSRROG00000029638	YBX3	77	82.292	Rhinopithecus_roxellana
ENSMODG00000018248	YBX3	93	84.014	ENSSBOG00000030573	YBX3	85	84.014	Saimiri_boliviensis_boliviensis
ENSMODG00000018248	YBX3	91	87.713	ENSSHAG00000003262	YBX3	98	86.689	Sarcophilus_harrisii
ENSMODG00000018248	YBX3	91	83.681	ENSSSCG00000000633	YBX3	74	85.130	Sus_scrofa
ENSMODG00000018248	YBX3	91	84.375	ENSTBEG00000012570	YBX3	79	83.681	Tupaia_belangeri
ENSMODG00000018248	YBX3	83	75.655	ENSTTRG00000008045	YBX3	100	74.906	Tursiops_truncatus
ENSMODG00000018248	YBX3	88	81.655	ENSUAMG00000016662	YBX3	100	81.655	Ursus_americanus
ENSMODG00000018248	YBX3	91	85.263	ENSUMAG00000016118	YBX3	97	84.354	Ursus_maritimus
ENSMODG00000018248	YBX3	90	61.754	ENSVPAG00000000876	YBX3	100	61.754	Vicugna_pacos
ENSMODG00000018248	YBX3	88	82.014	ENSVVUG00000004956	YBX3	100	82.014	Vulpes_vulpes
ENSMODG00000018248	YBX3	64	92.045	ENSXETG00000016239	ybx3	93	53.247	Xenopus_tropicalis