EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000018767 (Gene tree)
Gene ID: 100014081
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 5174 bases
Position: chr2:495042680-495047853
Accession: 100014081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000023398	RRM_1	PF00076.22	2.4e-39	1	2
ENSMODP00000023398	RRM_1	PF00076.22	2.4e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000023814	SF3B4-201	3226	-	ENSMODP00000023398	424 (aa)	XP_001365466	F7DXP0

Gene Model

Click here to download ENSMODG00000018767's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000018767's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000018767	SF3B4	68	38.798	ENSMODG00000013156	-	57	38.798
ENSMODG00000018767	SF3B4	73	40.000	ENSMODG00000012040	-	54	40.000
ENSMODG00000018767	SF3B4	63	38.202	ENSMODG00000015024	-	57	38.415
ENSMODG00000018767	SF3B4	73	39.344	ENSMODG00000017105	-	57	39.344
ENSMODG00000018767	SF3B4	70	39.891	ENSMODG00000006222	PABPC1	57	39.891

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000018767	SF3B4	100	99.057	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSMODG00000018767	SF3B4	57	96.667	ENSAPOG00000017647	sf3b4	77	82.445	Acanthochromis_polyacanthus
ENSMODG00000018767	SF3B4	100	99.292	ENSAMEG00000010073	SF3B4	100	99.292	Ailuropoda_melanoleuca
ENSMODG00000018767	SF3B4	57	96.667	ENSAOCG00000019801	sf3b4	77	82.445	Amphiprion_ocellaris
ENSMODG00000018767	SF3B4	57	96.667	ENSAPEG00000010365	sf3b4	77	82.445	Amphiprion_percula
ENSMODG00000018767	SF3B4	57	96.250	ENSATEG00000012844	sf3b4	76	81.562	Anabas_testudineus
ENSMODG00000018767	SF3B4	62	96.198	ENSACAG00000010019	SF3B4	90	90.339	Anolis_carolinensis
ENSMODG00000018767	SF3B4	100	99.057	ENSANAG00000031025	SF3B4	100	99.057	Aotus_nancymaae
ENSMODG00000018767	SF3B4	57	95.833	ENSACLG00000014260	sf3b4	76	81.505	Astatotilapia_calliptera
ENSMODG00000018767	SF3B4	57	96.250	ENSAMXG00000008282	sf3b4	60	96.250	Astyanax_mexicanus
ENSMODG00000018767	SF3B4	90	96.335	ENSBTAG00000012793	-	94	96.335	Bos_taurus
ENSMODG00000018767	SF3B4	100	99.292	ENSBTAG00000012495	SF3B4	100	99.292	Bos_taurus
ENSMODG00000018767	SF3B4	90	81.787	ENSCJAG00000042351	SF3B4	87	81.787	Callithrix_jacchus
ENSMODG00000018767	SF3B4	100	98.821	ENSCAFG00000011617	SF3B4	100	98.821	Canis_familiaris
ENSMODG00000018767	SF3B4	100	98.821	ENSCAFG00020019775	SF3B4	100	98.821	Canis_lupus_dingo
ENSMODG00000018767	SF3B4	100	99.292	ENSCHIG00000025663	-	100	99.292	Capra_hircus
ENSMODG00000018767	SF3B4	100	99.057	ENSTSYG00000009295	SF3B4	100	99.057	Carlito_syrichta
ENSMODG00000018767	SF3B4	100	99.057	ENSCPOG00000008267	SF3B4	100	99.057	Cavia_porcellus
ENSMODG00000018767	SF3B4	95	84.826	ENSCCAG00000019823	-	77	86.196	Cebus_capucinus
ENSMODG00000018767	SF3B4	100	86.334	ENSCCAG00000021751	-	69	92.593	Cebus_capucinus
ENSMODG00000018767	SF3B4	100	99.057	ENSCATG00000033114	SF3B4	100	99.057	Cercocebus_atys
ENSMODG00000018767	SF3B4	100	99.057	ENSCLAG00000015851	SF3B4	100	99.057	Chinchilla_lanigera
ENSMODG00000018767	SF3B4	100	99.057	ENSCSAG00000018129	SF3B4	100	99.057	Chlorocebus_sabaeus
ENSMODG00000018767	SF3B4	99	86.557	ENSCPBG00000008041	SF3B4	91	91.146	Chrysemys_picta_bellii
ENSMODG00000018767	SF3B4	50	90.654	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSMODG00000018767	SF3B4	100	99.057	ENSCANG00000035579	SF3B4	100	99.057	Colobus_angolensis_palliatus
ENSMODG00000018767	SF3B4	100	99.057	ENSCGRG00001003590	Sf3b4	100	99.057	Cricetulus_griseus_chok1gshd
ENSMODG00000018767	SF3B4	100	99.057	ENSCGRG00000016914	Sf3b4	100	99.057	Cricetulus_griseus_crigri
ENSMODG00000018767	SF3B4	57	96.250	ENSDARG00000018574	sf3b4	77	80.878	Danio_rerio
ENSMODG00000018767	SF3B4	98	96.394	ENSDNOG00000048908	-	99	96.394	Dasypus_novemcinctus
ENSMODG00000018767	SF3B4	97	80.387	ENSDNOG00000037231	-	76	81.789	Dasypus_novemcinctus
ENSMODG00000018767	SF3B4	100	99.292	ENSDORG00000016366	Sf3b4	100	99.292	Dipodomys_ordii
ENSMODG00000018767	SF3B4	76	92.593	ENSETEG00000008963	SF3B4	76	92.593	Echinops_telfairi
ENSMODG00000018767	SF3B4	100	99.292	ENSEASG00005001477	SF3B4	100	99.292	Equus_asinus_asinus
ENSMODG00000018767	SF3B4	100	99.292	ENSECAG00000024737	SF3B4	100	99.292	Equus_caballus
ENSMODG00000018767	SF3B4	100	99.292	ENSFCAG00000010106	SF3B4	100	99.292	Felis_catus
ENSMODG00000018767	SF3B4	100	99.057	ENSFDAG00000009286	SF3B4	100	99.057	Fukomys_damarensis
ENSMODG00000018767	SF3B4	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
ENSMODG00000018767	SF3B4	99	89.598	ENSGALG00000013352	SF3B4	90	90.078	Gallus_gallus
ENSMODG00000018767	SF3B4	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSMODG00000018767	SF3B4	99	86.321	ENSGAGG00000025055	SF3B4	79	90.885	Gopherus_agassizii
ENSMODG00000018767	SF3B4	100	99.057	ENSGGOG00000004761	SF3B4	100	99.057	Gorilla_gorilla
ENSMODG00000018767	SF3B4	100	72.877	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSMODG00000018767	SF3B4	57	95.833	ENSHBUG00000002028	sf3b4	76	81.505	Haplochromis_burtoni
ENSMODG00000018767	SF3B4	100	99.057	ENSHGLG00000012360	SF3B4	100	99.057	Heterocephalus_glaber_female
ENSMODG00000018767	SF3B4	100	97.877	ENSHGLG00100008533	SF3B4	100	97.877	Heterocephalus_glaber_male
ENSMODG00000018767	SF3B4	50	99.531	ENSHCOG00000003014	sf3b4	57	96.491	Hippocampus_comes
ENSMODG00000018767	SF3B4	57	96.667	ENSIPUG00000012242	Sf3b4	77	81.250	Ictalurus_punctatus
ENSMODG00000018767	SF3B4	93	71.247	ENSSTOG00000029627	-	74	67.913	Ictidomys_tridecemlineatus
ENSMODG00000018767	SF3B4	100	99.292	ENSSTOG00000000684	-	100	99.292	Ictidomys_tridecemlineatus
ENSMODG00000018767	SF3B4	76	84.052	ENSJJAG00000022500	Sf3b4	95	84.052	Jaculus_jaculus
ENSMODG00000018767	SF3B4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSMODG00000018767	SF3B4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSMODG00000018767	SF3B4	57	95.473	ENSLACG00000004436	SF3B4	87	85.938	Latimeria_chalumnae
ENSMODG00000018767	SF3B4	57	95.885	ENSLOCG00000009048	sf3b4	75	85.580	Lepisosteus_oculatus
ENSMODG00000018767	SF3B4	100	98.824	ENSLAFG00000008531	SF3B4	100	98.824	Loxodonta_africana
ENSMODG00000018767	SF3B4	100	99.057	ENSMFAG00000042395	SF3B4	100	99.057	Macaca_fascicularis
ENSMODG00000018767	SF3B4	93	70.960	ENSMFAG00000039067	-	57	80.841	Macaca_fascicularis
ENSMODG00000018767	SF3B4	100	99.057	ENSMMUG00000007256	SF3B4	100	99.057	Macaca_mulatta
ENSMODG00000018767	SF3B4	100	99.057	ENSMNEG00000031839	SF3B4	100	99.057	Macaca_nemestrina
ENSMODG00000018767	SF3B4	93	70.455	ENSMNEG00000031526	-	57	80.374	Macaca_nemestrina
ENSMODG00000018767	SF3B4	100	99.057	ENSMLEG00000038667	SF3B4	100	99.057	Mandrillus_leucophaeus
ENSMODG00000018767	SF3B4	57	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
ENSMODG00000018767	SF3B4	57	95.833	ENSMZEG00005026741	sf3b4	76	81.505	Maylandia_zebra
ENSMODG00000018767	SF3B4	99	88.416	ENSMGAG00000000653	SF3B4	91	88.083	Meleagris_gallopavo
ENSMODG00000018767	SF3B4	100	99.057	ENSMAUG00000015266	Sf3b4	100	99.057	Mesocricetus_auratus
ENSMODG00000018767	SF3B4	100	99.292	ENSMICG00000044961	SF3B4	100	99.292	Microcebus_murinus
ENSMODG00000018767	SF3B4	100	99.057	ENSMOCG00000013658	-	100	99.057	Microtus_ochrogaster
ENSMODG00000018767	SF3B4	98	93.976	ENSMOCG00000014155	-	100	93.976	Microtus_ochrogaster
ENSMODG00000018767	SF3B4	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSMODG00000018767	SF3B4	54	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
ENSMODG00000018767	SF3B4	100	98.821	MGP_CAROLIEiJ_G0025365	Sf3b4	100	98.821	Mus_caroli
ENSMODG00000018767	SF3B4	100	99.057	ENSMUSG00000068856	Sf3b4	100	99.057	Mus_musculus
ENSMODG00000018767	SF3B4	100	99.057	MGP_PahariEiJ_G0026809	Sf3b4	100	99.057	Mus_pahari
ENSMODG00000018767	SF3B4	100	99.057	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.057	Mus_spretus
ENSMODG00000018767	SF3B4	100	99.292	ENSMPUG00000005563	SF3B4	100	99.292	Mustela_putorius_furo
ENSMODG00000018767	SF3B4	100	99.057	ENSMLUG00000010789	SF3B4	100	99.057	Myotis_lucifugus
ENSMODG00000018767	SF3B4	100	98.821	ENSNGAG00000016337	Sf3b4	100	98.821	Nannospalax_galili
ENSMODG00000018767	SF3B4	57	96.250	ENSNBRG00000013865	sf3b4	76	81.818	Neolamprologus_brichardi
ENSMODG00000018767	SF3B4	100	76.179	ENSNLEG00000000537	-	82	84.568	Nomascus_leucogenys
ENSMODG00000018767	SF3B4	100	69.393	ENSNLEG00000009693	-	100	69.393	Nomascus_leucogenys
ENSMODG00000018767	SF3B4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSMODG00000018767	SF3B4	99	96.675	ENSOPRG00000010808	SF3B4	99	96.675	Ochotona_princeps
ENSMODG00000018767	SF3B4	75	86.751	ENSODEG00000003597	-	79	86.751	Octodon_degus
ENSMODG00000018767	SF3B4	88	72.922	ENSODEG00000008916	-	84	71.827	Octodon_degus
ENSMODG00000018767	SF3B4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
ENSMODG00000018767	SF3B4	99	58.140	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSMODG00000018767	SF3B4	100	99.292	ENSOCUG00000004614	SF3B4	100	99.292	Oryctolagus_cuniculus
ENSMODG00000018767	SF3B4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSMODG00000018767	SF3B4	55	96.983	ENSORLG00020000687	sf3b4	57	97.807	Oryzias_latipes_hni
ENSMODG00000018767	SF3B4	55	96.983	ENSORLG00015010989	sf3b4	57	97.807	Oryzias_latipes_hsok
ENSMODG00000018767	SF3B4	100	99.292	ENSOGAG00000006265	SF3B4	100	99.292	Otolemur_garnettii
ENSMODG00000018767	SF3B4	100	99.292	ENSOARG00000020718	-	100	99.292	Ovis_aries
ENSMODG00000018767	SF3B4	86	78.571	ENSOARG00000007368	-	77	79.375	Ovis_aries
ENSMODG00000018767	SF3B4	100	81.368	ENSPPAG00000030024	-	78	82.716	Pan_paniscus
ENSMODG00000018767	SF3B4	100	99.057	ENSPPAG00000040904	SF3B4	100	99.057	Pan_paniscus
ENSMODG00000018767	SF3B4	100	99.292	ENSPPRG00000007384	SF3B4	100	99.292	Panthera_pardus
ENSMODG00000018767	SF3B4	100	99.292	ENSPTIG00000014530	SF3B4	100	99.292	Panthera_tigris_altaica
ENSMODG00000018767	SF3B4	100	78.538	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
ENSMODG00000018767	SF3B4	100	99.057	ENSPTRG00000001243	SF3B4	100	99.057	Pan_troglodytes
ENSMODG00000018767	SF3B4	100	99.057	ENSPANG00000005126	SF3B4	100	99.057	Papio_anubis
ENSMODG00000018767	SF3B4	55	97.425	ENSPKIG00000020669	sf3b4	60	98.246	Paramormyrops_kingsleyae
ENSMODG00000018767	SF3B4	100	99.057	ENSPEMG00000017568	Sf3b4	100	99.057	Peromyscus_maniculatus_bairdii
ENSMODG00000018767	SF3B4	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSMODG00000018767	SF3B4	100	100.000	ENSPCIG00000008765	SF3B4	100	100.000	Phascolarctos_cinereus
ENSMODG00000018767	SF3B4	56	95.359	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
ENSMODG00000018767	SF3B4	56	95.359	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
ENSMODG00000018767	SF3B4	56	95.359	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSMODG00000018767	SF3B4	63	96.635	ENSPCAG00000000392	SF3B4	63	96.635	Procavia_capensis
ENSMODG00000018767	SF3B4	100	99.292	ENSPCOG00000015399	SF3B4	100	99.292	Propithecus_coquereli
ENSMODG00000018767	SF3B4	100	99.292	ENSPVAG00000014171	SF3B4	100	99.292	Pteropus_vampyrus
ENSMODG00000018767	SF3B4	57	95.833	ENSPNYG00000012700	sf3b4	76	81.505	Pundamilia_nyererei
ENSMODG00000018767	SF3B4	57	96.667	ENSPNAG00000000686	sf3b4	79	80.938	Pygocentrus_nattereri
ENSMODG00000018767	SF3B4	100	99.057	ENSRNOG00000021181	Sf3b4	100	99.057	Rattus_norvegicus
ENSMODG00000018767	SF3B4	100	99.057	ENSRBIG00000043392	SF3B4	100	99.057	Rhinopithecus_bieti
ENSMODG00000018767	SF3B4	100	99.057	ENSRROG00000029366	SF3B4	100	99.057	Rhinopithecus_roxellana
ENSMODG00000018767	SF3B4	92	70.951	ENSRROG00000028213	-	91	67.380	Rhinopithecus_roxellana
ENSMODG00000018767	SF3B4	100	73.113	ENSSBOG00000025174	-	73	79.567	Saimiri_boliviensis_boliviensis
ENSMODG00000018767	SF3B4	100	98.821	ENSSBOG00000012310	-	100	98.821	Saimiri_boliviensis_boliviensis
ENSMODG00000018767	SF3B4	100	97.406	ENSSHAG00000004043	SF3B4	100	99.738	Sarcophilus_harrisii
ENSMODG00000018767	SF3B4	56	96.624	ENSSFOG00015008864	sf3b4	56	98.246	Scleropages_formosus
ENSMODG00000018767	SF3B4	57	96.667	ENSSMAG00000006837	sf3b4	77	82.132	Scophthalmus_maximus
ENSMODG00000018767	SF3B4	57	97.083	ENSSDUG00000012064	sf3b4	76	82.188	Seriola_dumerili
ENSMODG00000018767	SF3B4	57	97.083	ENSSLDG00000014226	sf3b4	60	97.083	Seriola_lalandi_dorsalis
ENSMODG00000018767	SF3B4	72	95.102	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
ENSMODG00000018767	SF3B4	57	97.500	ENSSPAG00000019219	sf3b4	76	82.500	Stegastes_partitus
ENSMODG00000018767	SF3B4	100	99.057	ENSSSCG00000006665	-	100	99.057	Sus_scrofa
ENSMODG00000018767	SF3B4	85	64.365	ENSSSCG00000039440	-	79	65.741	Sus_scrofa
ENSMODG00000018767	SF3B4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSMODG00000018767	SF3B4	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSMODG00000018767	SF3B4	54	96.957	ENSTNIG00000009156	sf3b4	58	97.368	Tetraodon_nigroviridis
ENSMODG00000018767	SF3B4	100	99.292	ENSTTRG00000005217	SF3B4	100	99.292	Tursiops_truncatus
ENSMODG00000018767	SF3B4	100	99.292	ENSUAMG00000022468	SF3B4	100	99.292	Ursus_americanus
ENSMODG00000018767	SF3B4	100	98.349	ENSUMAG00000003802	SF3B4	100	98.349	Ursus_maritimus
ENSMODG00000018767	SF3B4	97	99.272	ENSVPAG00000008152	SF3B4	100	99.272	Vicugna_pacos
ENSMODG00000018767	SF3B4	99	92.105	ENSVVUG00000007732	-	100	92.105	Vulpes_vulpes
ENSMODG00000018767	SF3B4	65	96.014	ENSVVUG00000022697	-	58	96.014	Vulpes_vulpes
ENSMODG00000018767	SF3B4	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSMODG00000018767	SF3B4	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus