EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000021236 (Gene tree)
Gene ID: 100013672
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 89915 bases
Position: chr7:217640765-217730679
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000026541	XRN_N	PF03159.18	1.5e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000027016	XRN1-201	5130	-	ENSMODP00000026541	1710 (aa)	-	F6TZX3

Gene Model

Click here to download ENSMODG00000021236's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03008	Ribosome biogenesis in eukaryotes	KEGG
mdo03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000021236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000021236	XRN1	100	82.030	ENSG00000114127	XRN1	96	100.000	Homo_sapiens
ENSMODG00000021236	XRN1	94	72.579	ENSAPOG00000000622	xrn1	97	73.997	Acanthochromis_polyacanthus
ENSMODG00000021236	XRN1	100	79.361	ENSAMEG00000012538	XRN1	100	79.886	Ailuropoda_melanoleuca
ENSMODG00000021236	XRN1	95	71.855	ENSACIG00000001057	xrn1	97	73.394	Amphilophus_citrinellus
ENSMODG00000021236	XRN1	100	61.045	ENSAOCG00000014097	xrn1	95	70.482	Amphiprion_ocellaris
ENSMODG00000021236	XRN1	100	60.852	ENSAPEG00000006620	xrn1	98	62.500	Amphiprion_percula
ENSMODG00000021236	XRN1	95	68.345	ENSATEG00000009752	xrn1	100	68.650	Anabas_testudineus
ENSMODG00000021236	XRN1	99	76.382	ENSAPLG00000004905	XRN1	100	75.979	Anas_platyrhynchos
ENSMODG00000021236	XRN1	100	72.520	ENSACAG00000004985	XRN1	100	72.303	Anolis_carolinensis
ENSMODG00000021236	XRN1	100	82.205	ENSANAG00000029013	XRN1	99	88.967	Aotus_nancymaae
ENSMODG00000021236	XRN1	100	60.158	ENSACLG00000004806	xrn1	99	59.596	Astatotilapia_calliptera
ENSMODG00000021236	XRN1	99	60.710	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSMODG00000021236	XRN1	100	82.274	ENSBTAG00000011524	XRN1	100	82.332	Bos_taurus
ENSMODG00000021236	XRN1	70	38.554	WBGene00012730	xrn-1	78	38.829	Caenorhabditis_elegans
ENSMODG00000021236	XRN1	100	81.845	ENSCJAG00000001872	XRN1	100	82.020	Callithrix_jacchus
ENSMODG00000021236	XRN1	100	81.484	ENSCAFG00000007783	XRN1	100	81.776	Canis_familiaris
ENSMODG00000021236	XRN1	100	79.954	ENSCAFG00020009120	XRN1	99	87.714	Canis_lupus_dingo
ENSMODG00000021236	XRN1	99	79.829	ENSCHIG00000019192	XRN1	99	79.886	Capra_hircus
ENSMODG00000021236	XRN1	100	81.155	ENSTSYG00000002705	XRN1	100	81.272	Carlito_syrichta
ENSMODG00000021236	XRN1	100	82.264	ENSCCAG00000034800	XRN1	99	89.650	Cebus_capucinus
ENSMODG00000021236	XRN1	100	82.205	ENSCATG00000041794	XRN1	100	82.497	Cercocebus_atys
ENSMODG00000021236	XRN1	100	77.511	ENSCLAG00000001451	XRN1	99	89.968	Chinchilla_lanigera
ENSMODG00000021236	XRN1	100	82.264	ENSCSAG00000011265	XRN1	100	82.555	Chlorocebus_sabaeus
ENSMODG00000021236	XRN1	61	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSMODG00000021236	XRN1	70	45.101	ENSCSAVG00000008584	-	98	44.868	Ciona_savignyi
ENSMODG00000021236	XRN1	100	82.253	ENSCANG00000037495	XRN1	99	89.968	Colobus_angolensis_palliatus
ENSMODG00000021236	XRN1	100	78.000	ENSCGRG00001019411	Xrn1	99	88.694	Cricetulus_griseus_chok1gshd
ENSMODG00000021236	XRN1	100	78.000	ENSCGRG00000012464	Xrn1	99	88.694	Cricetulus_griseus_crigri
ENSMODG00000021236	XRN1	100	55.011	ENSCSEG00000021285	xrn1	93	96.117	Cynoglossus_semilaevis
ENSMODG00000021236	XRN1	66	73.433	ENSCVAG00000013089	xrn1	99	73.080	Cyprinodon_variegatus
ENSMODG00000021236	XRN1	99	62.266	ENSDARG00000091652	xrn1	98	80.973	Danio_rerio
ENSMODG00000021236	XRN1	100	77.228	ENSDORG00000013833	Xrn1	100	77.458	Dipodomys_ordii
ENSMODG00000021236	XRN1	70	41.104	FBgn0020261	pcm	72	40.857	Drosophila_melanogaster
ENSMODG00000021236	XRN1	86	91.892	ENSETEG00000003978	XRN1	88	91.935	Echinops_telfairi
ENSMODG00000021236	XRN1	100	81.914	ENSEASG00005002687	XRN1	99	89.650	Equus_asinus_asinus
ENSMODG00000021236	XRN1	100	81.914	ENSECAG00000008301	XRN1	100	82.205	Equus_caballus
ENSMODG00000021236	XRN1	92	78.669	ENSEEUG00000011323	XRN1	92	79.179	Erinaceus_europaeus
ENSMODG00000021236	XRN1	100	60.838	ENSELUG00000000169	xrn1	100	60.599	Esox_lucius
ENSMODG00000021236	XRN1	100	77.376	ENSFCAG00000027589	XRN1	99	92.088	Felis_catus
ENSMODG00000021236	XRN1	100	75.251	ENSFALG00000007021	XRN1	100	74.805	Ficedula_albicollis
ENSMODG00000021236	XRN1	100	79.053	ENSFDAG00000020494	XRN1	99	89.650	Fukomys_damarensis
ENSMODG00000021236	XRN1	84	67.713	ENSGMOG00000006396	xrn1	83	68.818	Gadus_morhua
ENSMODG00000021236	XRN1	100	75.433	ENSGALG00000002706	XRN1	100	75.042	Gallus_gallus
ENSMODG00000021236	XRN1	100	58.992	ENSGACG00000014328	xrn1	100	59.213	Gasterosteus_aculeatus
ENSMODG00000021236	XRN1	94	79.615	ENSGAGG00000017535	XRN1	99	79.254	Gopherus_agassizii
ENSMODG00000021236	XRN1	100	82.332	ENSGGOG00000008047	XRN1	100	82.439	Gorilla_gorilla
ENSMODG00000021236	XRN1	100	59.520	ENSHBUG00000005908	xrn1	98	72.840	Haplochromis_burtoni
ENSMODG00000021236	XRN1	100	79.179	ENSHGLG00000014476	XRN1	99	89.809	Heterocephalus_glaber_female
ENSMODG00000021236	XRN1	100	79.179	ENSHGLG00100015130	XRN1	99	89.809	Heterocephalus_glaber_male
ENSMODG00000021236	XRN1	94	72.158	ENSHCOG00000014062	xrn1	99	72.689	Hippocampus_comes
ENSMODG00000021236	XRN1	99	61.820	ENSIPUG00000015229	xrn1	99	61.499	Ictalurus_punctatus
ENSMODG00000021236	XRN1	100	79.497	ENSSTOG00000013552	XRN1	99	89.490	Ictidomys_tridecemlineatus
ENSMODG00000021236	XRN1	98	76.620	ENSJJAG00000010863	Xrn1	99	88.623	Jaculus_jaculus
ENSMODG00000021236	XRN1	94	60.507	ENSKMAG00000021356	xrn1	94	75.687	Kryptolebias_marmoratus
ENSMODG00000021236	XRN1	100	59.560	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSMODG00000021236	XRN1	100	70.023	ENSLACG00000009020	XRN1	100	69.989	Latimeria_chalumnae
ENSMODG00000021236	XRN1	100	65.731	ENSLOCG00000007944	xrn1	100	65.501	Lepisosteus_oculatus
ENSMODG00000021236	XRN1	62	89.045	ENSLAFG00000015426	XRN1	100	89.429	Loxodonta_africana
ENSMODG00000021236	XRN1	100	82.322	ENSMFAG00000032599	XRN1	100	82.614	Macaca_fascicularis
ENSMODG00000021236	XRN1	100	82.264	ENSMMUG00000014038	XRN1	100	82.555	Macaca_mulatta
ENSMODG00000021236	XRN1	100	82.147	ENSMNEG00000034217	XRN1	100	82.439	Macaca_nemestrina
ENSMODG00000021236	XRN1	93	71.180	ENSMAMG00000013219	xrn1	92	78.059	Mastacembelus_armatus
ENSMODG00000021236	XRN1	100	59.899	ENSMZEG00005015099	xrn1	99	59.563	Maylandia_zebra
ENSMODG00000021236	XRN1	99	75.317	ENSMGAG00000006333	XRN1	100	74.856	Meleagris_gallopavo
ENSMODG00000021236	XRN1	100	82.343	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSMODG00000021236	XRN1	57	88.535	ENSMOCG00000008665	Xrn1	99	88.535	Microtus_ochrogaster
ENSMODG00000021236	XRN1	100	56.780	ENSMALG00000004098	xrn1	100	57.069	Monopterus_albus
ENSMODG00000021236	XRN1	100	70.890	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSMODG00000021236	XRN1	100	77.130	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSMODG00000021236	XRN1	100	77.117	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSMODG00000021236	XRN1	100	77.015	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSMODG00000021236	XRN1	100	82.322	ENSMPUG00000012040	XRN1	100	82.672	Mustela_putorius_furo
ENSMODG00000021236	XRN1	100	78.641	ENSMLUG00000016885	XRN1	100	78.641	Myotis_lucifugus
ENSMODG00000021236	XRN1	57	86.571	ENSNGAG00000023964	Xrn1	99	86.571	Nannospalax_galili
ENSMODG00000021236	XRN1	100	82.078	ENSNLEG00000004726	XRN1	100	82.370	Nomascus_leucogenys
ENSMODG00000021236	XRN1	72	99.115	ENSMEUG00000014473	-	70	100.000	Notamacropus_eugenii
ENSMODG00000021236	XRN1	79	76.236	ENSOPRG00000007337	-	79	77.831	Ochotona_princeps
ENSMODG00000021236	XRN1	100	60.589	ENSONIG00000016673	xrn1	99	64.383	Oreochromis_niloticus
ENSMODG00000021236	XRN1	92	80.126	ENSOANG00000006735	XRN1	100	80.000	Ornithorhynchus_anatinus
ENSMODG00000021236	XRN1	100	80.286	ENSOCUG00000001861	XRN1	100	80.343	Oryctolagus_cuniculus
ENSMODG00000021236	XRN1	100	60.451	ENSORLG00000013005	xrn1	100	59.219	Oryzias_latipes
ENSMODG00000021236	XRN1	100	60.293	ENSORLG00020005559	xrn1	100	60.603	Oryzias_latipes_hni
ENSMODG00000021236	XRN1	100	59.989	ENSORLG00015022523	xrn1	100	60.466	Oryzias_latipes_hsok
ENSMODG00000021236	XRN1	92	72.101	ENSOMEG00000015397	xrn1	97	73.684	Oryzias_melastigma
ENSMODG00000021236	XRN1	100	80.023	ENSOGAG00000000170	XRN1	100	80.082	Otolemur_garnettii
ENSMODG00000021236	XRN1	99	82.604	ENSOARG00000006343	XRN1	99	82.662	Ovis_aries
ENSMODG00000021236	XRN1	100	82.253	ENSPPAG00000010180	XRN1	100	82.380	Pan_paniscus
ENSMODG00000021236	XRN1	100	81.283	ENSPPRG00000007125	XRN1	100	81.574	Panthera_pardus
ENSMODG00000021236	XRN1	100	81.283	ENSPTIG00000021081	XRN1	100	81.574	Panthera_tigris_altaica
ENSMODG00000021236	XRN1	100	82.312	ENSPTRG00000015482	XRN1	100	82.439	Pan_troglodytes
ENSMODG00000021236	XRN1	100	82.380	ENSPANG00000010638	XRN1	100	82.439	Papio_anubis
ENSMODG00000021236	XRN1	100	76.670	ENSPSIG00000018050	XRN1	100	76.614	Pelodiscus_sinensis
ENSMODG00000021236	XRN1	56	78.481	ENSPMGG00000002648	xrn1	98	78.165	Periophthalmus_magnuspinnatus
ENSMODG00000021236	XRN1	57	88.694	ENSPEMG00000020610	Xrn1	99	88.694	Peromyscus_maniculatus_bairdii
ENSMODG00000021236	XRN1	65	50.084	ENSPMAG00000002975	xrn1	91	77.299	Petromyzon_marinus
ENSMODG00000021236	XRN1	100	93.003	ENSPCIG00000028735	XRN1	99	96.817	Phascolarctos_cinereus
ENSMODG00000021236	XRN1	90	64.510	ENSPFOG00000013932	xrn1	99	64.529	Poecilia_formosa
ENSMODG00000021236	XRN1	90	64.140	ENSPLAG00000021653	xrn1	99	64.176	Poecilia_latipinna
ENSMODG00000021236	XRN1	88	64.886	ENSPMEG00000003076	xrn1	95	64.756	Poecilia_mexicana
ENSMODG00000021236	XRN1	100	60.350	ENSPREG00000021147	xrn1	100	60.260	Poecilia_reticulata
ENSMODG00000021236	XRN1	100	82.195	ENSPPYG00000014172	XRN1	100	82.253	Pongo_abelii
ENSMODG00000021236	XRN1	90	75.824	ENSPCAG00000005638	XRN1	100	75.824	Procavia_capensis
ENSMODG00000021236	XRN1	100	82.253	ENSPCOG00000013089	XRN1	99	90.026	Propithecus_coquereli
ENSMODG00000021236	XRN1	96	85.615	ENSPVAG00000016265	XRN1	96	85.615	Pteropus_vampyrus
ENSMODG00000021236	XRN1	100	59.675	ENSPNYG00000010570	xrn1	99	59.596	Pundamilia_nyererei
ENSMODG00000021236	XRN1	99	60.444	ENSPNAG00000023531	xrn1	99	60.355	Pygocentrus_nattereri
ENSMODG00000021236	XRN1	100	77.702	ENSRNOG00000042951	Xrn1	100	77.702	Rattus_norvegicus
ENSMODG00000021236	XRN1	100	81.914	ENSRBIG00000041227	XRN1	100	82.205	Rhinopithecus_bieti
ENSMODG00000021236	XRN1	68	53.951	YGL173C	XRN1	81	33.987	Saccharomyces_cerevisiae
ENSMODG00000021236	XRN1	100	81.786	ENSSBOG00000029561	XRN1	100	81.845	Saimiri_boliviensis_boliviensis
ENSMODG00000021236	XRN1	99	93.199	ENSSHAG00000016207	XRN1	100	93.022	Sarcophilus_harrisii
ENSMODG00000021236	XRN1	100	61.178	ENSSFOG00015024211	xrn1	100	60.892	Scleropages_formosus
ENSMODG00000021236	XRN1	95	69.545	ENSSMAG00000016534	xrn1	94	73.623	Scophthalmus_maximus
ENSMODG00000021236	XRN1	89	71.870	ENSSDUG00000010306	xrn1	95	73.350	Seriola_dumerili
ENSMODG00000021236	XRN1	96	69.648	ENSSLDG00000021543	xrn1	100	69.648	Seriola_lalandi_dorsalis
ENSMODG00000021236	XRN1	66	80.352	ENSSARG00000007741	-	82	87.179	Sorex_araneus
ENSMODG00000021236	XRN1	100	78.074	ENSTGUG00000008498	XRN1	100	77.726	Taeniopygia_guttata
ENSMODG00000021236	XRN1	100	57.976	ENSTRUG00000004895	xrn1	99	74.239	Takifugu_rubripes
ENSMODG00000021236	XRN1	100	58.052	ENSTNIG00000017615	xrn1	100	58.271	Tetraodon_nigroviridis
ENSMODG00000021236	XRN1	75	94.609	ENSTBEG00000003256	XRN1	88	82.080	Tupaia_belangeri
ENSMODG00000021236	XRN1	100	78.563	ENSTTRG00000012914	XRN1	100	78.621	Tursiops_truncatus
ENSMODG00000021236	XRN1	100	80.700	ENSUAMG00000001608	XRN1	99	87.714	Ursus_americanus
ENSMODG00000021236	XRN1	100	82.332	ENSUMAG00000013625	XRN1	100	82.741	Ursus_maritimus
ENSMODG00000021236	XRN1	100	79.510	ENSVPAG00000004690	XRN1	100	79.802	Vicugna_pacos
ENSMODG00000021236	XRN1	100	82.322	ENSVVUG00000024461	XRN1	99	90.127	Vulpes_vulpes
ENSMODG00000021236	XRN1	100	69.427	ENSXETG00000000619	xrn1	99	89.062	Xenopus_tropicalis
ENSMODG00000021236	XRN1	100	60.023	ENSXCOG00000007917	xrn1	94	73.350	Xiphophorus_couchianus
ENSMODG00000021236	XRN1	91	72.108	ENSXMAG00000018320	xrn1	96	73.183	Xiphophorus_maculatus