EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMPUG00000009883 (Gene tree)
Gene ID: 101693768
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Mustela_putorius_furo
Status: putative
Strand: Plus strand
Length: 10362 bases
Position: chrGL896962.1:1687334-1697695
Accession: 101693768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMPUP00000009809	LSM	PF01423.22	1.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMPUT00000009968	LSM1-201	402	-	ENSMPUP00000009809	133 (aa)	XP_004758284	M3YEQ2

Gene Model

Click here to download ENSMPUG00000009883's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMPUG00000009883's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMPUG00000009883	LSM1	100	99.248	ENSG00000175324	LSM1	100	99.248	Homo_sapiens
ENSMPUG00000009883	LSM1	100	86.466	ENSAPOG00000010833	lsm1	100	86.466	Acanthochromis_polyacanthus
ENSMPUG00000009883	LSM1	100	99.248	ENSAMEG00000011141	LSM1	100	99.248	Ailuropoda_melanoleuca
ENSMPUG00000009883	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSMPUG00000009883	LSM1	100	86.466	ENSAOCG00000017997	-	100	86.466	Amphiprion_ocellaris
ENSMPUG00000009883	LSM1	100	86.466	ENSAOCG00000017096	lsm1	100	86.466	Amphiprion_ocellaris
ENSMPUG00000009883	LSM1	100	86.466	ENSAPEG00000011669	lsm1	100	86.466	Amphiprion_percula
ENSMPUG00000009883	LSM1	100	84.962	ENSATEG00000022266	lsm1	100	84.962	Anabas_testudineus
ENSMPUG00000009883	LSM1	100	99.248	ENSANAG00000027785	LSM1	100	99.248	Aotus_nancymaae
ENSMPUG00000009883	LSM1	100	84.962	ENSACLG00000011400	lsm1	100	84.962	Astatotilapia_calliptera
ENSMPUG00000009883	LSM1	100	87.218	ENSAMXG00000005441	lsm1	100	87.218	Astyanax_mexicanus
ENSMPUG00000009883	LSM1	100	98.496	ENSBTAG00000001612	LSM1	100	98.496	Bos_taurus
ENSMPUG00000009883	LSM1	82	52.174	WBGene00003076	lsm-1	90	52.174	Caenorhabditis_elegans
ENSMPUG00000009883	LSM1	100	98.496	ENSCJAG00000048015	LSM1	100	98.496	Callithrix_jacchus
ENSMPUG00000009883	LSM1	100	99.248	ENSCAFG00000006113	LSM1	100	99.248	Canis_familiaris
ENSMPUG00000009883	LSM1	100	99.248	ENSCAFG00020001822	LSM1	100	99.248	Canis_lupus_dingo
ENSMPUG00000009883	LSM1	100	99.248	ENSCHIG00000013194	LSM1	100	99.248	Capra_hircus
ENSMPUG00000009883	LSM1	100	99.248	ENSTSYG00000010394	LSM1	100	99.248	Carlito_syrichta
ENSMPUG00000009883	LSM1	100	99.248	ENSCPOG00000032671	LSM1	100	99.248	Cavia_porcellus
ENSMPUG00000009883	LSM1	100	99.248	ENSCCAG00000037171	LSM1	100	99.248	Cebus_capucinus
ENSMPUG00000009883	LSM1	100	99.248	ENSCATG00000020377	LSM1	100	99.248	Cercocebus_atys
ENSMPUG00000009883	LSM1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSMPUG00000009883	LSM1	100	99.248	ENSCSAG00000015485	LSM1	100	99.248	Chlorocebus_sabaeus
ENSMPUG00000009883	LSM1	100	98.496	ENSCHOG00000006030	LSM1	100	98.496	Choloepus_hoffmanni
ENSMPUG00000009883	LSM1	95	89.764	ENSCPBG00000006569	LSM1	86	89.764	Chrysemys_picta_bellii
ENSMPUG00000009883	LSM1	99	68.182	ENSCING00000013536	-	99	68.182	Ciona_intestinalis
ENSMPUG00000009883	LSM1	100	99.248	ENSCANG00000019173	LSM1	100	99.248	Colobus_angolensis_palliatus
ENSMPUG00000009883	LSM1	80	81.081	ENSCGRG00001002259	-	97	81.081	Cricetulus_griseus_chok1gshd
ENSMPUG00000009883	LSM1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSMPUG00000009883	LSM1	80	81.081	ENSCGRG00000013603	-	97	81.081	Cricetulus_griseus_crigri
ENSMPUG00000009883	LSM1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSMPUG00000009883	LSM1	100	84.211	ENSCSEG00000010570	lsm1	92	84.211	Cynoglossus_semilaevis
ENSMPUG00000009883	LSM1	100	83.459	ENSCSEG00000008319	lsm1	92	83.459	Cynoglossus_semilaevis
ENSMPUG00000009883	LSM1	100	84.211	ENSCVAG00000003871	lsm1	100	84.211	Cyprinodon_variegatus
ENSMPUG00000009883	LSM1	100	86.466	ENSDARG00000043177	lsm1	100	86.466	Danio_rerio
ENSMPUG00000009883	LSM1	100	98.496	ENSDNOG00000032911	-	100	98.496	Dasypus_novemcinctus
ENSMPUG00000009883	LSM1	89	78.992	ENSDNOG00000046620	-	100	78.992	Dasypus_novemcinctus
ENSMPUG00000009883	LSM1	100	99.248	ENSDNOG00000046387	-	100	99.248	Dasypus_novemcinctus
ENSMPUG00000009883	LSM1	100	93.233	ENSDNOG00000030989	-	100	93.233	Dasypus_novemcinctus
ENSMPUG00000009883	LSM1	100	99.248	ENSDORG00000028172	Lsm1	100	99.248	Dipodomys_ordii
ENSMPUG00000009883	LSM1	93	64.516	FBgn0261067	LSm1	91	64.516	Drosophila_melanogaster
ENSMPUG00000009883	LSM1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
ENSMPUG00000009883	LSM1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
ENSMPUG00000009883	LSM1	100	69.925	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSMPUG00000009883	LSM1	100	87.218	ENSELUG00000002322	lsm1	100	87.218	Esox_lucius
ENSMPUG00000009883	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSMPUG00000009883	LSM1	100	99.248	ENSFCAG00000039335	LSM1	100	99.248	Felis_catus
ENSMPUG00000009883	LSM1	89	95.763	ENSFALG00000006723	LSM1	100	95.763	Ficedula_albicollis
ENSMPUG00000009883	LSM1	100	99.248	ENSFDAG00000007658	LSM1	100	99.248	Fukomys_damarensis
ENSMPUG00000009883	LSM1	100	84.211	ENSFHEG00000009556	lsm1	100	84.211	Fundulus_heteroclitus
ENSMPUG00000009883	LSM1	100	84.211	ENSGMOG00000016651	lsm1	98	84.211	Gadus_morhua
ENSMPUG00000009883	LSM1	100	93.985	ENSGALG00000003245	LSM1	100	93.985	Gallus_gallus
ENSMPUG00000009883	LSM1	100	84.211	ENSGAFG00000011355	lsm1	100	84.211	Gambusia_affinis
ENSMPUG00000009883	LSM1	100	84.962	ENSGACG00000011763	lsm1	98	84.962	Gasterosteus_aculeatus
ENSMPUG00000009883	LSM1	100	96.241	ENSGAGG00000024065	LSM1	100	96.241	Gopherus_agassizii
ENSMPUG00000009883	LSM1	100	99.248	ENSGGOG00000022658	LSM1	100	99.248	Gorilla_gorilla
ENSMPUG00000009883	LSM1	100	84.962	ENSHBUG00000010897	lsm1	100	84.962	Haplochromis_burtoni
ENSMPUG00000009883	LSM1	100	78.947	ENSHGLG00000017574	-	100	78.947	Heterocephalus_glaber_female
ENSMPUG00000009883	LSM1	100	99.248	ENSHGLG00000005711	LSM1	100	99.248	Heterocephalus_glaber_female
ENSMPUG00000009883	LSM1	100	99.248	ENSHGLG00100017660	LSM1	100	99.248	Heterocephalus_glaber_male
ENSMPUG00000009883	LSM1	100	78.947	ENSHGLG00100012152	-	100	78.947	Heterocephalus_glaber_male
ENSMPUG00000009883	LSM1	100	84.962	ENSHCOG00000017233	lsm1	100	84.962	Hippocampus_comes
ENSMPUG00000009883	LSM1	100	85.714	ENSIPUG00000002312	LSM1	100	85.714	Ictalurus_punctatus
ENSMPUG00000009883	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSMPUG00000009883	LSM1	100	97.744	ENSJJAG00000014605	-	100	97.744	Jaculus_jaculus
ENSMPUG00000009883	LSM1	100	84.962	ENSKMAG00000003016	lsm1	100	84.962	Kryptolebias_marmoratus
ENSMPUG00000009883	LSM1	100	84.962	ENSLBEG00000022352	lsm1	100	84.962	Labrus_bergylta
ENSMPUG00000009883	LSM1	89	91.525	ENSLACG00000010947	LSM1	98	91.525	Latimeria_chalumnae
ENSMPUG00000009883	LSM1	100	95.489	ENSLOCG00000015149	lsm1	100	95.489	Lepisosteus_oculatus
ENSMPUG00000009883	LSM1	100	99.248	ENSLAFG00000003534	LSM1	100	99.248	Loxodonta_africana
ENSMPUG00000009883	LSM1	100	99.248	ENSMFAG00000032661	LSM1	100	99.248	Macaca_fascicularis
ENSMPUG00000009883	LSM1	100	99.248	ENSMLEG00000034535	LSM1	100	99.248	Mandrillus_leucophaeus
ENSMPUG00000009883	LSM1	100	84.962	ENSMAMG00000007464	lsm1	100	84.962	Mastacembelus_armatus
ENSMPUG00000009883	LSM1	100	84.962	ENSMZEG00005010321	lsm1	100	84.962	Maylandia_zebra
ENSMPUG00000009883	LSM1	100	93.985	ENSMGAG00000002125	LSM1	100	93.985	Meleagris_gallopavo
ENSMPUG00000009883	LSM1	100	98.496	ENSMICG00000030726	LSM1	100	98.496	Microcebus_murinus
ENSMPUG00000009883	LSM1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSMPUG00000009883	LSM1	100	85.714	ENSMMOG00000015466	lsm1	100	85.714	Mola_mola
ENSMPUG00000009883	LSM1	100	98.496	ENSMODG00000010732	-	100	98.496	Monodelphis_domestica
ENSMPUG00000009883	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSMPUG00000009883	LSM1	100	96.992	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	Mus_caroli
ENSMPUG00000009883	LSM1	100	96.992	ENSMUSG00000037296	Lsm1	100	96.992	Mus_musculus
ENSMPUG00000009883	LSM1	100	96.992	MGP_PahariEiJ_G0021400	Lsm1	100	96.992	Mus_pahari
ENSMPUG00000009883	LSM1	100	96.992	MGP_SPRETEiJ_G0032049	Lsm1	100	96.992	Mus_spretus
ENSMPUG00000009883	LSM1	100	98.496	ENSMLUG00000003734	LSM1	100	98.496	Myotis_lucifugus
ENSMPUG00000009883	LSM1	100	98.496	ENSNGAG00000003753	Lsm1	100	98.496	Nannospalax_galili
ENSMPUG00000009883	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSMPUG00000009883	LSM1	100	99.248	ENSNLEG00000029390	LSM1	100	99.248	Nomascus_leucogenys
ENSMPUG00000009883	LSM1	100	98.496	ENSMEUG00000014077	LSM1	100	98.496	Notamacropus_eugenii
ENSMPUG00000009883	LSM1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSMPUG00000009883	LSM1	100	99.248	ENSODEG00000004834	LSM1	100	99.248	Octodon_degus
ENSMPUG00000009883	LSM1	100	84.962	ENSONIG00000010782	lsm1	100	84.962	Oreochromis_niloticus
ENSMPUG00000009883	LSM1	100	97.744	ENSOANG00000003256	LSM1	100	97.744	Ornithorhynchus_anatinus
ENSMPUG00000009883	LSM1	100	99.248	ENSOCUG00000015399	LSM1	100	99.248	Oryctolagus_cuniculus
ENSMPUG00000009883	LSM1	100	86.466	ENSORLG00000030288	lsm1	100	86.466	Oryzias_latipes
ENSMPUG00000009883	LSM1	100	84.962	ENSORLG00020006213	-	86	84.962	Oryzias_latipes_hni
ENSMPUG00000009883	LSM1	100	86.466	ENSORLG00020003941	lsm1	100	86.466	Oryzias_latipes_hni
ENSMPUG00000009883	LSM1	100	86.466	ENSORLG00015018350	lsm1	100	86.466	Oryzias_latipes_hsok
ENSMPUG00000009883	LSM1	100	84.962	ENSOMEG00000012454	lsm1	100	84.962	Oryzias_melastigma
ENSMPUG00000009883	LSM1	100	99.248	ENSOGAG00000015161	LSM1	100	99.248	Otolemur_garnettii
ENSMPUG00000009883	LSM1	100	99.248	ENSOARG00000001317	LSM1	100	99.248	Ovis_aries
ENSMPUG00000009883	LSM1	100	99.248	ENSPPAG00000032279	LSM1	100	99.248	Pan_paniscus
ENSMPUG00000009883	LSM1	100	99.248	ENSPPRG00000014172	-	100	99.248	Panthera_pardus
ENSMPUG00000009883	LSM1	100	99.248	ENSPTIG00000010289	LSM1	100	99.248	Panthera_tigris_altaica
ENSMPUG00000009883	LSM1	100	99.248	ENSPTRG00000020169	LSM1	100	99.248	Pan_troglodytes
ENSMPUG00000009883	LSM1	100	99.248	ENSPANG00000008814	LSM1	100	99.248	Papio_anubis
ENSMPUG00000009883	LSM1	100	90.977	ENSPKIG00000001839	lsm1	100	90.977	Paramormyrops_kingsleyae
ENSMPUG00000009883	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSMPUG00000009883	LSM1	98	90.000	ENSPSIG00000012563	LSM1	99	90.000	Pelodiscus_sinensis
ENSMPUG00000009883	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSMPUG00000009883	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSMPUG00000009883	LSM1	100	96.992	ENSPCIG00000008880	LSM1	100	96.992	Phascolarctos_cinereus
ENSMPUG00000009883	LSM1	100	84.211	ENSPFOG00000016029	lsm1	100	84.211	Poecilia_formosa
ENSMPUG00000009883	LSM1	100	84.211	ENSPLAG00000007879	lsm1	100	84.211	Poecilia_latipinna
ENSMPUG00000009883	LSM1	100	84.211	ENSPMEG00000023550	lsm1	100	84.211	Poecilia_mexicana
ENSMPUG00000009883	LSM1	100	84.211	ENSPREG00000009574	lsm1	100	84.211	Poecilia_reticulata
ENSMPUG00000009883	LSM1	100	99.248	ENSPPYG00000018521	LSM1	100	99.248	Pongo_abelii
ENSMPUG00000009883	LSM1	100	99.248	ENSPCOG00000020901	-	100	99.248	Propithecus_coquereli
ENSMPUG00000009883	LSM1	100	99.248	ENSPVAG00000006016	LSM1	100	99.248	Pteropus_vampyrus
ENSMPUG00000009883	LSM1	100	84.962	ENSPNYG00000018067	lsm1	100	84.962	Pundamilia_nyererei
ENSMPUG00000009883	LSM1	100	86.466	ENSPNAG00000013707	lsm1	100	86.466	Pygocentrus_nattereri
ENSMPUG00000009883	LSM1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
ENSMPUG00000009883	LSM1	100	99.248	ENSRBIG00000027449	LSM1	100	99.248	Rhinopithecus_bieti
ENSMPUG00000009883	LSM1	100	99.248	ENSRROG00000036074	LSM1	100	99.248	Rhinopithecus_roxellana
ENSMPUG00000009883	LSM1	83	47.009	YJL124C	LSM1	67	47.009	Saccharomyces_cerevisiae
ENSMPUG00000009883	LSM1	100	98.496	ENSSHAG00000017260	LSM1	100	98.496	Sarcophilus_harrisii
ENSMPUG00000009883	LSM1	100	92.481	ENSSFOG00015019528	lsm1	100	92.481	Scleropages_formosus
ENSMPUG00000009883	LSM1	100	84.962	ENSSMAG00000004930	lsm1	100	84.962	Scophthalmus_maximus
ENSMPUG00000009883	LSM1	100	84.962	ENSSDUG00000021823	lsm1	100	84.962	Seriola_dumerili
ENSMPUG00000009883	LSM1	100	84.962	ENSSLDG00000012154	lsm1	100	84.962	Seriola_lalandi_dorsalis
ENSMPUG00000009883	LSM1	100	96.241	ENSSPUG00000014878	LSM1	100	96.241	Sphenodon_punctatus
ENSMPUG00000009883	LSM1	100	85.714	ENSSPAG00000020548	lsm1	100	85.714	Stegastes_partitus
ENSMPUG00000009883	LSM1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
ENSMPUG00000009883	LSM1	100	95.489	ENSTGUG00000004793	LSM1	100	95.489	Taeniopygia_guttata
ENSMPUG00000009883	LSM1	100	87.218	ENSTRUG00000025239	lsm1	100	87.218	Takifugu_rubripes
ENSMPUG00000009883	LSM1	100	87.218	ENSTNIG00000004055	lsm1	100	87.218	Tetraodon_nigroviridis
ENSMPUG00000009883	LSM1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSMPUG00000009883	LSM1	100	99.248	ENSTTRG00000004482	LSM1	100	99.248	Tursiops_truncatus
ENSMPUG00000009883	LSM1	100	99.248	ENSUAMG00000004103	LSM1	100	99.248	Ursus_americanus
ENSMPUG00000009883	LSM1	100	99.248	ENSUMAG00000009132	LSM1	100	99.248	Ursus_maritimus
ENSMPUG00000009883	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSMPUG00000009883	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSMPUG00000009883	LSM1	100	99.248	ENSVVUG00000020191	LSM1	100	99.248	Vulpes_vulpes
ENSMPUG00000009883	LSM1	100	92.701	ENSXETG00000009004	lsm1	100	92.701	Xenopus_tropicalis
ENSMPUG00000009883	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSMPUG00000009883	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus