EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMPUG00000013347 (Gene tree)
Gene ID: 101671523
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Mustela_putorius_furo
Status: putative
Strand: Minus strand
Length: 76313 bases
Position: chrGL897167.1:1007011-1083323
Accession: 101671523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMPUP00000013248	RRM_1	PF00076.22	1.8e-32	1	2
ENSMPUP00000013248	RRM_1	PF00076.22	1.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMPUT00000013460	PSPC1-201	1566	-	ENSMPUP00000013248	521 (aa)	XP_004778294	M3YPJ0

Gene Model

Click here to download ENSMPUG00000013347's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMPUG00000013347's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMPUG00000013347	PSPC1	57	64.356	ENSMPUG00000014931	-	90	67.483
ENSMPUG00000013347	PSPC1	89	60.390	ENSMPUG00000004937	NONO	77	69.613

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMPUG00000013347	PSPC1	100	98.470	ENSG00000121390	PSPC1	100	98.470	Homo_sapiens
ENSMPUG00000013347	PSPC1	88	70.650	ENSAPOG00000015946	pspc1	79	73.721	Acanthochromis_polyacanthus
ENSMPUG00000013347	PSPC1	100	99.424	ENSAMEG00000017420	PSPC1	100	99.424	Ailuropoda_melanoleuca
ENSMPUG00000013347	PSPC1	88	62.208	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSMPUG00000013347	PSPC1	88	70.146	ENSAOCG00000005279	pspc1	78	73.256	Amphiprion_ocellaris
ENSMPUG00000013347	PSPC1	88	71.277	ENSAPEG00000015927	pspc1	79	73.256	Amphiprion_percula
ENSMPUG00000013347	PSPC1	88	58.085	ENSATEG00000004878	pspc1	76	62.350	Anabas_testudineus
ENSMPUG00000013347	PSPC1	89	60.944	ENSAPLG00000003643	SFPQ	83	59.013	Anas_platyrhynchos
ENSMPUG00000013347	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSMPUG00000013347	PSPC1	90	52.500	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSMPUG00000013347	PSPC1	89	91.631	ENSACAG00000002093	PSPC1	88	91.845	Anolis_carolinensis
ENSMPUG00000013347	PSPC1	100	98.464	ENSANAG00000000059	PSPC1	100	98.464	Aotus_nancymaae
ENSMPUG00000013347	PSPC1	99	57.649	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSMPUG00000013347	PSPC1	88	68.542	ENSAMXG00000036881	pspc1	80	73.103	Astyanax_mexicanus
ENSMPUG00000013347	PSPC1	100	96.545	ENSBTAG00000003934	PSPC1	100	96.545	Bos_taurus
ENSMPUG00000013347	PSPC1	100	98.464	ENSCJAG00000004554	PSPC1	100	98.464	Callithrix_jacchus
ENSMPUG00000013347	PSPC1	100	99.424	ENSCAFG00020002009	PSPC1	100	99.424	Canis_lupus_dingo
ENSMPUG00000013347	PSPC1	100	96.545	ENSCHIG00000016708	PSPC1	100	96.545	Capra_hircus
ENSMPUG00000013347	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSMPUG00000013347	PSPC1	100	97.505	ENSCPOG00000000395	PSPC1	100	97.505	Cavia_porcellus
ENSMPUG00000013347	PSPC1	100	98.464	ENSCCAG00000033498	PSPC1	100	98.464	Cebus_capucinus
ENSMPUG00000013347	PSPC1	100	98.088	ENSCATG00000036434	PSPC1	100	98.088	Cercocebus_atys
ENSMPUG00000013347	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSMPUG00000013347	PSPC1	100	91.013	ENSCHOG00000008913	PSPC1	100	90.631	Choloepus_hoffmanni
ENSMPUG00000013347	PSPC1	99	86.882	ENSCPBG00000020859	PSPC1	99	87.097	Chrysemys_picta_bellii
ENSMPUG00000013347	PSPC1	59	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSMPUG00000013347	PSPC1	78	85.679	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSMPUG00000013347	PSPC1	100	96.750	ENSCGRG00001018368	Pspc1	100	96.750	Cricetulus_griseus_chok1gshd
ENSMPUG00000013347	PSPC1	100	96.750	ENSCGRG00000011724	Pspc1	100	96.750	Cricetulus_griseus_crigri
ENSMPUG00000013347	PSPC1	87	66.739	ENSCVAG00000007679	-	78	68.483	Cyprinodon_variegatus
ENSMPUG00000013347	PSPC1	99	66.479	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSMPUG00000013347	PSPC1	100	96.176	ENSDNOG00000011078	PSPC1	100	96.176	Dasypus_novemcinctus
ENSMPUG00000013347	PSPC1	100	93.690	ENSDORG00000016050	Pspc1	100	93.690	Dipodomys_ordii
ENSMPUG00000013347	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSMPUG00000013347	PSPC1	62	44.798	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSMPUG00000013347	PSPC1	88	59.298	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSMPUG00000013347	PSPC1	100	98.273	ENSEASG00005000119	PSPC1	100	98.273	Equus_asinus_asinus
ENSMPUG00000013347	PSPC1	100	98.273	ENSECAG00000017286	PSPC1	100	98.273	Equus_caballus
ENSMPUG00000013347	PSPC1	73	93.443	ENSEEUG00000011288	-	88	82.188	Erinaceus_europaeus
ENSMPUG00000013347	PSPC1	99	65.683	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSMPUG00000013347	PSPC1	100	99.424	ENSFCAG00000027841	PSPC1	100	99.424	Felis_catus
ENSMPUG00000013347	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	87.382	Ficedula_albicollis
ENSMPUG00000013347	PSPC1	100	95.393	ENSFDAG00000002617	PSPC1	100	95.393	Fukomys_damarensis
ENSMPUG00000013347	PSPC1	88	66.953	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSMPUG00000013347	PSPC1	99	87.452	ENSGALG00000017142	PSPC1	99	87.500	Gallus_gallus
ENSMPUG00000013347	PSPC1	62	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSMPUG00000013347	PSPC1	88	66.164	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSMPUG00000013347	PSPC1	91	59.583	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSMPUG00000013347	PSPC1	99	86.882	ENSGAGG00000019164	PSPC1	99	86.907	Gopherus_agassizii
ENSMPUG00000013347	PSPC1	100	98.279	ENSGGOG00000003414	PSPC1	100	98.279	Gorilla_gorilla
ENSMPUG00000013347	PSPC1	99	64.695	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSMPUG00000013347	PSPC1	100	97.889	ENSHGLG00000018811	PSPC1	100	97.889	Heterocephalus_glaber_female
ENSMPUG00000013347	PSPC1	67	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSMPUG00000013347	PSPC1	73	70.757	ENSHCOG00000013251	pspc1	83	71.390	Hippocampus_comes
ENSMPUG00000013347	PSPC1	99	67.850	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSMPUG00000013347	PSPC1	100	97.706	ENSSTOG00000026833	PSPC1	100	97.706	Ictidomys_tridecemlineatus
ENSMPUG00000013347	PSPC1	100	96.941	ENSJJAG00000018334	Pspc1	100	96.941	Jaculus_jaculus
ENSMPUG00000013347	PSPC1	88	55.724	ENSKMAG00000013525	-	84	54.409	Kryptolebias_marmoratus
ENSMPUG00000013347	PSPC1	92	66.402	ENSLBEG00000004474	pspc1	76	71.934	Labrus_bergylta
ENSMPUG00000013347	PSPC1	99	77.298	ENSLACG00000010762	PSPC1	99	78.503	Latimeria_chalumnae
ENSMPUG00000013347	PSPC1	99	77.692	ENSLOCG00000010832	pspc1	91	84.382	Lepisosteus_oculatus
ENSMPUG00000013347	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSMPUG00000013347	PSPC1	100	98.088	ENSMFAG00000032728	PSPC1	100	98.088	Macaca_fascicularis
ENSMPUG00000013347	PSPC1	100	98.088	ENSMMUG00000020262	PSPC1	100	98.088	Macaca_mulatta
ENSMPUG00000013347	PSPC1	100	98.088	ENSMNEG00000027401	PSPC1	100	98.088	Macaca_nemestrina
ENSMPUG00000013347	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	99.248	Mandrillus_leucophaeus
ENSMPUG00000013347	PSPC1	88	67.835	ENSMAMG00000004333	pspc1	87	62.260	Mastacembelus_armatus
ENSMPUG00000013347	PSPC1	99	57.649	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSMPUG00000013347	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSMPUG00000013347	PSPC1	88	91.342	ENSMAUG00000021067	Pspc1	99	91.126	Mesocricetus_auratus
ENSMPUG00000013347	PSPC1	100	97.897	ENSMICG00000013970	PSPC1	100	97.897	Microcebus_murinus
ENSMPUG00000013347	PSPC1	100	96.947	ENSMOCG00000006060	Pspc1	100	96.947	Microtus_ochrogaster
ENSMPUG00000013347	PSPC1	94	42.803	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSMPUG00000013347	PSPC1	93	95.670	ENSMODG00000008029	PSPC1	78	95.670	Monodelphis_domestica
ENSMPUG00000013347	PSPC1	88	69.528	ENSMALG00000008914	pspc1	88	67.591	Monopterus_albus
ENSMPUG00000013347	PSPC1	100	96.756	MGP_CAROLIEiJ_G0019341	Pspc1	100	96.756	Mus_caroli
ENSMPUG00000013347	PSPC1	100	96.947	ENSMUSG00000021938	Pspc1	100	96.947	Mus_musculus
ENSMPUG00000013347	PSPC1	100	96.756	MGP_PahariEiJ_G0030359	Pspc1	100	96.756	Mus_pahari
ENSMPUG00000013347	PSPC1	100	96.756	MGP_SPRETEiJ_G0020232	Pspc1	100	96.756	Mus_spretus
ENSMPUG00000013347	PSPC1	100	96.756	ENSMLUG00000017663	PSPC1	100	96.756	Myotis_lucifugus
ENSMPUG00000013347	PSPC1	100	96.941	ENSNGAG00000011271	Pspc1	100	96.941	Nannospalax_galili
ENSMPUG00000013347	PSPC1	74	64.912	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSMPUG00000013347	PSPC1	100	98.279	ENSNLEG00000001294	PSPC1	100	98.279	Nomascus_leucogenys
ENSMPUG00000013347	PSPC1	84	92.969	ENSMEUG00000000476	PSPC1	84	94.141	Notamacropus_eugenii
ENSMPUG00000013347	PSPC1	100	85.441	ENSODEG00000019012	-	100	87.287	Octodon_degus
ENSMPUG00000013347	PSPC1	100	86.756	ENSODEG00000007817	-	100	82.922	Octodon_degus
ENSMPUG00000013347	PSPC1	99	64.534	ENSONIG00000012010	pspc1	87	69.068	Oreochromis_niloticus
ENSMPUG00000013347	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSMPUG00000013347	PSPC1	99	66.411	ENSOANG00000011381	-	99	64.491	Ornithorhynchus_anatinus
ENSMPUG00000013347	PSPC1	100	97.514	ENSOCUG00000006153	PSPC1	100	97.514	Oryctolagus_cuniculus
ENSMPUG00000013347	PSPC1	88	70.213	ENSORLG00000004232	-	87	64.389	Oryzias_latipes
ENSMPUG00000013347	PSPC1	88	69.787	ENSORLG00020000578	PSPC1	87	67.234	Oryzias_latipes_hni
ENSMPUG00000013347	PSPC1	88	70.638	ENSORLG00015017480	pspc1	77	72.087	Oryzias_latipes_hsok
ENSMPUG00000013347	PSPC1	100	98.279	ENSOGAG00000012643	PSPC1	100	98.279	Otolemur_garnettii
ENSMPUG00000013347	PSPC1	100	91.587	ENSOARG00000014163	PSPC1	100	91.587	Ovis_aries
ENSMPUG00000013347	PSPC1	89	92.688	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSMPUG00000013347	PSPC1	100	99.424	ENSPPRG00000008833	PSPC1	100	99.424	Panthera_pardus
ENSMPUG00000013347	PSPC1	100	83.109	ENSPTIG00000016917	PSPC1	100	83.109	Panthera_tigris_altaica
ENSMPUG00000013347	PSPC1	98	96.887	ENSPTRG00000005677	PSPC1	99	98.354	Pan_troglodytes
ENSMPUG00000013347	PSPC1	100	98.279	ENSPANG00000001992	PSPC1	100	98.279	Papio_anubis
ENSMPUG00000013347	PSPC1	89	74.298	ENSPKIG00000003578	pspc1	81	77.419	Paramormyrops_kingsleyae
ENSMPUG00000013347	PSPC1	99	86.957	ENSPSIG00000005168	PSPC1	99	86.604	Pelodiscus_sinensis
ENSMPUG00000013347	PSPC1	61	69.018	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSMPUG00000013347	PSPC1	100	97.132	ENSPEMG00000015214	Pspc1	100	97.132	Peromyscus_maniculatus_bairdii
ENSMPUG00000013347	PSPC1	99	96.169	ENSPCIG00000017680	PSPC1	100	96.169	Phascolarctos_cinereus
ENSMPUG00000013347	PSPC1	95	66.406	ENSPFOG00000003362	pspc1	88	68.076	Poecilia_formosa
ENSMPUG00000013347	PSPC1	99	63.956	ENSPLAG00000011540	pspc1	87	68.076	Poecilia_latipinna
ENSMPUG00000013347	PSPC1	68	65.181	ENSPLAG00000004407	-	52	60.647	Poecilia_latipinna
ENSMPUG00000013347	PSPC1	69	65.278	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSMPUG00000013347	PSPC1	99	63.586	ENSPMEG00000008322	pspc1	87	67.653	Poecilia_mexicana
ENSMPUG00000013347	PSPC1	99	63.873	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSMPUG00000013347	PSPC1	100	98.088	ENSPPYG00000005186	PSPC1	100	98.088	Pongo_abelii
ENSMPUG00000013347	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSMPUG00000013347	PSPC1	100	93.690	ENSPCOG00000014364	PSPC1	100	93.690	Propithecus_coquereli
ENSMPUG00000013347	PSPC1	100	94.434	ENSPVAG00000005036	PSPC1	100	95.010	Pteropus_vampyrus
ENSMPUG00000013347	PSPC1	99	57.885	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSMPUG00000013347	PSPC1	99	68.224	ENSPNAG00000016511	pspc1	100	68.037	Pygocentrus_nattereri
ENSMPUG00000013347	PSPC1	100	97.137	ENSRNOG00000020782	Pspc1	100	97.137	Rattus_norvegicus
ENSMPUG00000013347	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSMPUG00000013347	PSPC1	100	98.470	ENSRROG00000036334	PSPC1	100	98.470	Rhinopithecus_roxellana
ENSMPUG00000013347	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSMPUG00000013347	PSPC1	100	90.095	ENSSHAG00000004696	PSPC1	100	90.857	Sarcophilus_harrisii
ENSMPUG00000013347	PSPC1	82	79.021	ENSSFOG00015001395	pspc1	90	78.241	Scleropages_formosus
ENSMPUG00000013347	PSPC1	95	63.688	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSMPUG00000013347	PSPC1	88	68.966	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSMPUG00000013347	PSPC1	88	64.502	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSMPUG00000013347	PSPC1	100	89.635	ENSSARG00000000888	PSPC1	100	90.211	Sorex_araneus
ENSMPUG00000013347	PSPC1	99	75.094	ENSSPUG00000008550	PSPC1	99	75.235	Sphenodon_punctatus
ENSMPUG00000013347	PSPC1	89	53.814	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSMPUG00000013347	PSPC1	88	69.278	ENSSPAG00000001921	pspc1	77	73.256	Stegastes_partitus
ENSMPUG00000013347	PSPC1	100	97.510	ENSSSCG00000009569	PSPC1	100	97.510	Sus_scrofa
ENSMPUG00000013347	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSMPUG00000013347	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSMPUG00000013347	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSMPUG00000013347	PSPC1	100	77.543	ENSTBEG00000002361	PSPC1	100	75.816	Tupaia_belangeri
ENSMPUG00000013347	PSPC1	100	97.318	ENSTTRG00000003343	PSPC1	100	97.318	Tursiops_truncatus
ENSMPUG00000013347	PSPC1	67	99.140	ENSUAMG00000012309	PSPC1	100	99.140	Ursus_americanus
ENSMPUG00000013347	PSPC1	93	99.384	ENSUMAG00000013993	PSPC1	100	99.384	Ursus_maritimus
ENSMPUG00000013347	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSMPUG00000013347	PSPC1	100	99.424	ENSVVUG00000006414	PSPC1	100	99.424	Vulpes_vulpes
ENSMPUG00000013347	PSPC1	69	71.545	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSMPUG00000013347	PSPC1	69	71.816	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus