EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000126694	-	6328	-	-	- (aa)	-	-
ENSMUST00000137467	-	3390	-	ENSMUSP00000134125	467 (aa)	-	Q64092
ENSMUST00000143680	-	4717	-	-	- (aa)	-	-
ENSMUST00000115680	-	3103	-	ENSMUSP00000111344	108 (aa)	-	Z4YLF7
ENSMUST00000101695	-	2989	-	ENSMUSP00000099219	467 (aa)	-	Q64092
ENSMUST00000079542	-	3163	-	ENSMUSP00000078498	537 (aa)	-	A2AEW0
ENSMUST00000144715	-	636	-	-	- (aa)	-	-
ENSMUST00000077680	-	3277	-	ENSMUSP00000076864	572 (aa)	-	A2AEW1
ENSMUST00000115679	-	3239	-	ENSMUSP00000111343	467 (aa)	-	Q64092
ENSMUST00000144900	-	408	-	ENSMUSP00000120920	136 (aa)	-	A2AEW2
ENSMUST00000132209	-	372	-	-	- (aa)	-	-
ENSMUST00000115677	-	2943	XM_006527578	ENSMUSP00000111341	467 (aa)	XP_006527641	Q64092
ENSMUST00000133456	-	663	-	-	- (aa)	-	-
ENSMUST00000115678	-	2658	XM_017318454	ENSMUSP00000111342	432 (aa)	XP_017173943	Q64092

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04137	Mitophagy - animal	KEGG
mmu05202	Transcriptional misregulation in cancer	KEGG
mmu05211	Renal cell carcinoma	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	16936731.	IDA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	16936731.	IDA	Function
GO:0002250	adaptive immune response	-	IEA	Process
GO:0002376	immune system process	-	IEA	Process
GO:0003677	DNA binding	15994295.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	16936731.	IDA	Function
GO:0005634	nucleus	21209915.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	15994295.	IC	Component
GO:0005737	cytoplasm	21209915.	IMP	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006959	humoral immune response	16936731.	IMP	Process
GO:0044212	transcription regulatory region DNA binding	16936731.	IDA	Function
GO:0045670	regulation of osteoclast differentiation	11930005.	IGI	Process
GO:0045785	positive regulation of cell adhesion	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	15994295.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	16936731.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046982	protein heterodimerization activity	16936731.	IPI	Function
GO:0046983	protein dimerization activity	-	IEA	Function
GO:0120163	negative regulation of cold-induced thermogenesis	23885019.	IMP	Process