EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000107896	-	5590	XM_017314476	ENSMUSP00000103528	634 (aa)	XP_017169965	Q61510
ENSMUST00000100627	-	1433	-	ENSMUSP00000098192	387 (aa)	-	Q5SU72
ENSMUST00000000284	-	5566	-	ENSMUSP00000000284	626 (aa)	-	Q5SU71

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04064	NF-kappa B signaling pathway	KEGG
mmu04622	RIG-I-like receptor signaling pathway	KEGG
mmu05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000000275	Trim25	99	73.071	ENSG00000121060	TRIM25	99	73.386	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002376	immune system process	-	IEA	Process
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	11331580.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0006513	protein monoubiquitination	-	ISO	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0016874	ligase activity	-	IEA	Function
GO:0030433	ubiquitin-dependent ERAD pathway	-	ISO	Process
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	-	ISO	Process
GO:0043627	response to estrogen	-	ISO	Process
GO:0045087	innate immune response	18248090.	IDA	Process
GO:0045087	innate immune response	-	ISO	Process
GO:0046596	regulation of viral entry into host cell	-	ISO	Process
GO:0046597	negative regulation of viral entry into host cell	18248090.	IDA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051091	positive regulation of DNA-binding transcription factor activity	-	ISO	Process
GO:0051092	positive regulation of NF-kappaB transcription factor activity	-	ISO	Process
GO:0051607	defense response to virus	-	IEA	Process
GO:0061630	ubiquitin protein ligase activity	-	ISO	Function
GO:1902186	regulation of viral release from host cell	-	ISO	Process
GO:1902187	negative regulation of viral release from host cell	18248090.	IDA	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process