EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145380	-	959	-	-	- (aa)	-	-
ENSMUST00000153040	-	422	-	-	- (aa)	-	-
ENSMUST00000125221	-	565	-	ENSMUSP00000121930	117 (aa)	-	B0R0E8
ENSMUST00000129130	-	796	-	ENSMUSP00000123130	204 (aa)	-	B0R0F0
ENSMUST00000128612	-	695	-	ENSMUSP00000115610	76 (aa)	-	D6RG68
ENSMUST00000000317	-	1620	XM_006498656	ENSMUSP00000000317	418 (aa)	XP_006498719	P30275
ENSMUST00000126130	-	703	-	ENSMUSP00000117463	59 (aa)	-	D6RET9
ENSMUST00000150271	-	851	-	ENSMUSP00000120507	251 (aa)	-	A2ARP5
ENSMUST00000125812	-	850	-	ENSMUSP00000115501	149 (aa)	-	B0R0E9
ENSMUST00000078222	-	1518	XM_006498655	ENSMUSP00000077349	418 (aa)	XP_006498718	P30275

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00330	Arginine and proline metabolism	KEGG
mmu01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000000308	Ckmt1	83	37.960	WBGene00013894	ZC434.8	95	37.960	Caenorhabditis_elegans
ENSMUSG00000000308	Ckmt1	81	43.275	FBgn0000116	Argk	93	43.275	Drosophila_melanogaster

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004111	creatine kinase activity	-	ISO	Function
GO:0005515	protein binding	16549787.21370995.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21370995.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	-	IEA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016772	transferase activity, transferring phosphorus-containing groups	-	IEA	Function
GO:0032091	negative regulation of protein binding	21370995.	IDA	Process
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043066	negative regulation of apoptotic process	21370995.	IGI	Process
GO:0043204	perikaryon	-	ISO	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0044289	contact site	-	ISO	Component