EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000000339 (Gene tree)
Gene ID: 66368
Gene Symbol: Rtca
Alias: 2310009A18Rik|Rtcd1
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 19246 bases
Position: chr3:116488963-116508208
Accession: 1913618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000000348	RTC	PF01137.21	7.7e-87	1	1
ENSMUSP00000119463	RTC	PF01137.21	1.9e-23	1	1
ENSMUSP00000000348	RTC_insert	PF05189.13	2.7e-25	1	1
ENSMUSP00000119463	RTC_insert	PF05189.13	1.5e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000124486	-	629	-	-	- (aa)	-	-
ENSMUST00000140677	-	876	-	ENSMUSP00000117610	52 (aa)	-	D6REI7
ENSMUST00000000348	-	1594	XM_006501883	ENSMUSP00000000348	366 (aa)	XP_006501946	Q9D7H3
ENSMUST00000143425	-	737	-	ENSMUSP00000121357	113 (aa)	-	D6RD00
ENSMUST00000153005	-	712	-	ENSMUSP00000119463	142 (aa)	-	D3Z263

Gene Model

Click here to download ENSMUSG00000000339's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000000339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000000339	Rtca	100	90.710	ENSG00000137996	RTCA	100	93.878	Homo_sapiens
ENSMUSG00000000339	Rtca	100	70.219	ENSAPOG00000001345	rtca	99	70.219	Acanthochromis_polyacanthus
ENSMUSG00000000339	Rtca	100	90.141	ENSAMEG00000008855	RTCA	100	89.963	Ailuropoda_melanoleuca
ENSMUSG00000000339	Rtca	100	70.423	ENSACIG00000019643	rtca	100	69.945	Amphilophus_citrinellus
ENSMUSG00000000339	Rtca	100	70.219	ENSAOCG00000014979	rtca	99	70.219	Amphiprion_ocellaris
ENSMUSG00000000339	Rtca	100	70.219	ENSAPEG00000006945	rtca	99	70.219	Amphiprion_percula
ENSMUSG00000000339	Rtca	100	69.014	ENSATEG00000006315	rtca	100	67.760	Anabas_testudineus
ENSMUSG00000000339	Rtca	100	82.394	ENSAPLG00000015430	RTCA	100	79.096	Anas_platyrhynchos
ENSMUSG00000000339	Rtca	90	82.979	ENSACAG00000003290	RTCA	94	82.530	Anolis_carolinensis
ENSMUSG00000000339	Rtca	100	90.845	ENSANAG00000025446	RTCA	100	90.437	Aotus_nancymaae
ENSMUSG00000000339	Rtca	100	68.852	ENSACLG00000020770	rtca	99	68.852	Astatotilapia_calliptera
ENSMUSG00000000339	Rtca	100	72.535	ENSAMXG00000043271	rtca	98	70.833	Astyanax_mexicanus
ENSMUSG00000000339	Rtca	100	92.077	ENSBTAG00000006321	RTCA	100	92.077	Bos_taurus
ENSMUSG00000000339	Rtca	100	90.845	ENSCJAG00000003398	RTCA	100	90.437	Callithrix_jacchus
ENSMUSG00000000339	Rtca	100	91.549	ENSCAFG00000020010	RTCA	68	91.257	Canis_familiaris
ENSMUSG00000000339	Rtca	100	91.549	ENSCAFG00020011528	RTCA	57	91.257	Canis_lupus_dingo
ENSMUSG00000000339	Rtca	100	91.803	ENSCHIG00000018937	RTCA	100	91.803	Capra_hircus
ENSMUSG00000000339	Rtca	100	90.710	ENSTSYG00000011305	RTCA	100	90.710	Carlito_syrichta
ENSMUSG00000000339	Rtca	92	93.750	ENSCPOG00000009296	-	99	92.806	Cavia_porcellus
ENSMUSG00000000339	Rtca	100	90.845	ENSCCAG00000021844	RTCA	99	91.892	Cebus_capucinus
ENSMUSG00000000339	Rtca	100	90.845	ENSCATG00000019364	RTCA	100	89.968	Cercocebus_atys
ENSMUSG00000000339	Rtca	100	90.845	ENSCLAG00000006125	RTCA	100	90.852	Chinchilla_lanigera
ENSMUSG00000000339	Rtca	100	90.984	ENSCSAG00000001509	RTCA	100	90.984	Chlorocebus_sabaeus
ENSMUSG00000000339	Rtca	100	90.437	ENSCHOG00000005211	RTCA	100	90.437	Choloepus_hoffmanni
ENSMUSG00000000339	Rtca	100	83.099	ENSCPBG00000026658	RTCA	100	82.514	Chrysemys_picta_bellii
ENSMUSG00000000339	Rtca	98	55.000	ENSCING00000007875	-	98	55.000	Ciona_intestinalis
ENSMUSG00000000339	Rtca	98	53.333	ENSCSAVG00000007269	-	98	53.333	Ciona_savignyi
ENSMUSG00000000339	Rtca	100	90.710	ENSCANG00000040106	RTCA	100	90.710	Colobus_angolensis_palliatus
ENSMUSG00000000339	Rtca	100	93.662	ENSCGRG00001013163	Rtca	85	94.796	Cricetulus_griseus_chok1gshd
ENSMUSG00000000339	Rtca	92	100.000	ENSCGRG00001001848	-	83	95.050	Cricetulus_griseus_chok1gshd
ENSMUSG00000000339	Rtca	92	100.000	ENSCGRG00000002803	-	87	87.611	Cricetulus_griseus_crigri
ENSMUSG00000000339	Rtca	100	68.310	ENSCSEG00000000530	rtca	96	68.333	Cynoglossus_semilaevis
ENSMUSG00000000339	Rtca	92	66.667	ENSCVAG00000021809	rtca	100	57.923	Cyprinodon_variegatus
ENSMUSG00000000339	Rtca	100	70.492	ENSDARG00000002215	rtca	100	70.492	Danio_rerio
ENSMUSG00000000339	Rtca	100	89.891	ENSDNOG00000000456	RTCA	100	89.891	Dasypus_novemcinctus
ENSMUSG00000000339	Rtca	100	93.443	ENSDORG00000005448	Rtca	100	93.443	Dipodomys_ordii
ENSMUSG00000000339	Rtca	94	56.000	FBgn0025630	Rtca	98	39.106	Drosophila_melanogaster
ENSMUSG00000000339	Rtca	96	60.360	ENSEBUG00000008556	rtca	97	55.650	Eptatretus_burgeri
ENSMUSG00000000339	Rtca	100	91.549	ENSEASG00005015926	RTCA	100	90.164	Equus_asinus_asinus
ENSMUSG00000000339	Rtca	100	91.549	ENSECAG00000019831	RTCA	100	90.164	Equus_caballus
ENSMUSG00000000339	Rtca	92	97.917	ENSEEUG00000001165	RTCA	100	81.503	Erinaceus_europaeus
ENSMUSG00000000339	Rtca	99	70.360	ENSELUG00000003741	rtca	99	70.360	Esox_lucius
ENSMUSG00000000339	Rtca	100	91.549	ENSFCAG00000024460	RTCA	100	91.530	Felis_catus
ENSMUSG00000000339	Rtca	100	81.690	ENSFALG00000002443	RTCA	91	81.471	Ficedula_albicollis
ENSMUSG00000000339	Rtca	98	70.442	ENSFDAG00000016084	-	100	70.442	Fukomys_damarensis
ENSMUSG00000000339	Rtca	100	90.164	ENSFDAG00000012070	-	100	90.164	Fukomys_damarensis
ENSMUSG00000000339	Rtca	79	68.750	ENSFHEG00000002868	rtca	90	69.048	Fundulus_heteroclitus
ENSMUSG00000000339	Rtca	100	68.310	ENSGMOG00000013264	rtca	100	67.760	Gadus_morhua
ENSMUSG00000000339	Rtca	100	83.099	ENSGALG00000005277	RTCA	100	81.967	Gallus_gallus
ENSMUSG00000000339	Rtca	100	69.399	ENSGAFG00000011853	rtca	99	69.399	Gambusia_affinis
ENSMUSG00000000339	Rtca	100	68.579	ENSGACG00000013497	rtca	100	68.579	Gasterosteus_aculeatus
ENSMUSG00000000339	Rtca	100	82.394	ENSGAGG00000023306	RTCA	100	83.276	Gopherus_agassizii
ENSMUSG00000000339	Rtca	100	89.891	ENSGGOG00000044018	-	100	89.891	Gorilla_gorilla
ENSMUSG00000000339	Rtca	100	91.257	ENSGGOG00000009546	-	100	91.257	Gorilla_gorilla
ENSMUSG00000000339	Rtca	100	68.579	ENSHBUG00000002114	rtca	99	68.579	Haplochromis_burtoni
ENSMUSG00000000339	Rtca	100	90.164	ENSHGLG00000002617	RTCA	100	90.164	Heterocephalus_glaber_female
ENSMUSG00000000339	Rtca	100	90.164	ENSHGLG00100006056	RTCA	100	90.164	Heterocephalus_glaber_male
ENSMUSG00000000339	Rtca	100	63.934	ENSHCOG00000020628	rtca	89	63.934	Hippocampus_comes
ENSMUSG00000000339	Rtca	100	74.648	ENSIPUG00000024803	rtca	100	70.219	Ictalurus_punctatus
ENSMUSG00000000339	Rtca	100	82.394	ENSSTOG00000033099	-	100	79.564	Ictidomys_tridecemlineatus
ENSMUSG00000000339	Rtca	100	90.141	ENSSTOG00000013528	-	100	83.607	Ictidomys_tridecemlineatus
ENSMUSG00000000339	Rtca	92	93.750	ENSJJAG00000016178	Rtca	100	67.486	Jaculus_jaculus
ENSMUSG00000000339	Rtca	100	71.831	ENSKMAG00000006651	rtca	99	71.585	Kryptolebias_marmoratus
ENSMUSG00000000339	Rtca	100	67.606	ENSLBEG00000002448	-	99	68.224	Labrus_bergylta
ENSMUSG00000000339	Rtca	99	68.698	ENSLBEG00000028971	rtca	99	68.698	Labrus_bergylta
ENSMUSG00000000339	Rtca	100	77.465	ENSLACG00000013666	RTCA	100	77.049	Latimeria_chalumnae
ENSMUSG00000000339	Rtca	100	73.239	ENSLOCG00000000093	rtca	99	71.858	Lepisosteus_oculatus
ENSMUSG00000000339	Rtca	100	91.257	ENSLAFG00000001473	RTCA	100	91.257	Loxodonta_africana
ENSMUSG00000000339	Rtca	100	90.984	ENSMFAG00000034132	RTCA	100	90.984	Macaca_fascicularis
ENSMUSG00000000339	Rtca	100	90.437	ENSMMUG00000019105	RTCA	100	90.437	Macaca_mulatta
ENSMUSG00000000339	Rtca	100	90.845	ENSMNEG00000037163	RTCA	100	90.291	Macaca_nemestrina
ENSMUSG00000000339	Rtca	100	90.845	ENSMLEG00000042151	RTCA	100	74.590	Mandrillus_leucophaeus
ENSMUSG00000000339	Rtca	100	71.127	ENSMAMG00000016536	rtca	100	70.492	Mastacembelus_armatus
ENSMUSG00000000339	Rtca	100	68.852	ENSMZEG00005017945	rtca	99	68.852	Maylandia_zebra
ENSMUSG00000000339	Rtca	100	81.690	ENSMGAG00000006892	RTCA	99	80.251	Meleagris_gallopavo
ENSMUSG00000000339	Rtca	100	95.902	ENSMAUG00000008488	Rtca	100	95.902	Mesocricetus_auratus
ENSMUSG00000000339	Rtca	100	90.845	ENSMICG00000008643	RTCA	100	91.262	Microcebus_murinus
ENSMUSG00000000339	Rtca	100	94.809	ENSMOCG00000016660	Rtca	100	94.809	Microtus_ochrogaster
ENSMUSG00000000339	Rtca	100	72.535	ENSMMOG00000007750	rtca	100	70.874	Mola_mola
ENSMUSG00000000339	Rtca	100	86.620	ENSMODG00000003557	RTCA	100	86.612	Monodelphis_domestica
ENSMUSG00000000339	Rtca	100	71.127	ENSMALG00000020844	rtca	100	70.492	Monopterus_albus
ENSMUSG00000000339	Rtca	100	100.000	MGP_CAROLIEiJ_G0025565	Rtca	100	100.000	Mus_caroli
ENSMUSG00000000339	Rtca	100	100.000	MGP_PahariEiJ_G0027011	Rtca	100	100.000	Mus_pahari
ENSMUSG00000000339	Rtca	100	100.000	MGP_SPRETEiJ_G0026515	Rtca	100	100.000	Mus_spretus
ENSMUSG00000000339	Rtca	100	91.549	ENSMPUG00000012119	RTCA	100	91.257	Mustela_putorius_furo
ENSMUSG00000000339	Rtca	100	86.104	ENSMLUG00000009922	RTCA	100	86.104	Myotis_lucifugus
ENSMUSG00000000339	Rtca	100	93.989	ENSNGAG00000011540	Rtca	99	93.989	Nannospalax_galili
ENSMUSG00000000339	Rtca	100	68.852	ENSNBRG00000003062	rtca	99	68.852	Neolamprologus_brichardi
ENSMUSG00000000339	Rtca	100	90.845	ENSNLEG00000031426	RTCA	100	90.710	Nomascus_leucogenys
ENSMUSG00000000339	Rtca	92	93.750	ENSMEUG00000010030	-	77	75.758	Notamacropus_eugenii
ENSMUSG00000000339	Rtca	100	93.662	ENSOPRG00000012092	RTCA	71	87.361	Ochotona_princeps
ENSMUSG00000000339	Rtca	100	88.732	ENSODEG00000006990	RTCA	96	91.168	Octodon_degus
ENSMUSG00000000339	Rtca	100	68.579	ENSONIG00000007753	rtca	99	68.579	Oreochromis_niloticus
ENSMUSG00000000339	Rtca	100	85.211	ENSOANG00000012055	RTCA	98	83.596	Ornithorhynchus_anatinus
ENSMUSG00000000339	Rtca	100	92.254	ENSOCUG00000014247	RTCA	100	91.530	Oryctolagus_cuniculus
ENSMUSG00000000339	Rtca	100	69.126	ENSORLG00000013605	rtca	100	69.126	Oryzias_latipes
ENSMUSG00000000339	Rtca	100	69.126	ENSORLG00020001904	rtca	100	69.126	Oryzias_latipes_hni
ENSMUSG00000000339	Rtca	100	69.399	ENSORLG00015021064	rtca	100	69.399	Oryzias_latipes_hsok
ENSMUSG00000000339	Rtca	100	71.127	ENSOMEG00000000756	rtca	100	69.945	Oryzias_melastigma
ENSMUSG00000000339	Rtca	94	95.918	ENSOGAG00000005627	RTCA	100	81.967	Otolemur_garnettii
ENSMUSG00000000339	Rtca	100	89.437	ENSOARG00000018122	RTCA	100	90.566	Ovis_aries
ENSMUSG00000000339	Rtca	100	90.845	ENSPPAG00000035119	RTCA	100	90.615	Pan_paniscus
ENSMUSG00000000339	Rtca	100	91.257	ENSPPRG00000000350	RTCA	100	91.257	Panthera_pardus
ENSMUSG00000000339	Rtca	100	91.257	ENSPTIG00000012816	RTCA	100	91.257	Panthera_tigris_altaica
ENSMUSG00000000339	Rtca	100	90.845	ENSPTRG00000001004	RTCA	100	89.968	Pan_troglodytes
ENSMUSG00000000339	Rtca	100	90.984	ENSPANG00000000346	RTCA	100	90.984	Papio_anubis
ENSMUSG00000000339	Rtca	100	73.239	ENSPKIG00000001653	rtca	100	71.311	Paramormyrops_kingsleyae
ENSMUSG00000000339	Rtca	100	83.803	ENSPSIG00000011408	RTCA	100	83.333	Pelodiscus_sinensis
ENSMUSG00000000339	Rtca	76	62.791	ENSPMGG00000022529	rtca	97	61.438	Periophthalmus_magnuspinnatus
ENSMUSG00000000339	Rtca	100	95.902	ENSPEMG00000018582	Rtca	100	95.902	Peromyscus_maniculatus_bairdii
ENSMUSG00000000339	Rtca	100	61.972	ENSPMAG00000009110	rtca	99	57.923	Petromyzon_marinus
ENSMUSG00000000339	Rtca	100	86.620	ENSPCIG00000007684	RTCA	100	86.612	Phascolarctos_cinereus
ENSMUSG00000000339	Rtca	100	69.755	ENSPFOG00000004824	rtca	100	69.755	Poecilia_formosa
ENSMUSG00000000339	Rtca	100	69.945	ENSPLAG00000011753	rtca	99	69.945	Poecilia_latipinna
ENSMUSG00000000339	Rtca	100	69.945	ENSPMEG00000020469	rtca	99	69.945	Poecilia_mexicana
ENSMUSG00000000339	Rtca	100	70.765	ENSPREG00000001365	rtca	99	70.765	Poecilia_reticulata
ENSMUSG00000000339	Rtca	100	90.710	ENSPPYG00000001115	RTCA	100	90.710	Pongo_abelii
ENSMUSG00000000339	Rtca	92	93.750	ENSPPYG00000029514	-	97	90.816	Pongo_abelii
ENSMUSG00000000339	Rtca	100	89.437	ENSPCAG00000005076	RTCA	100	87.158	Procavia_capensis
ENSMUSG00000000339	Rtca	100	96.154	ENSPCOG00000005603	RTCA	100	96.154	Propithecus_coquereli
ENSMUSG00000000339	Rtca	94	97.959	ENSPVAG00000009478	RTCA	100	86.807	Pteropus_vampyrus
ENSMUSG00000000339	Rtca	100	68.852	ENSPNYG00000004722	rtca	99	68.852	Pundamilia_nyererei
ENSMUSG00000000339	Rtca	100	73.239	ENSPNAG00000022270	rtca	100	70.219	Pygocentrus_nattereri
ENSMUSG00000000339	Rtca	100	98.592	ENSRNOG00000014575	Rtca	100	97.814	Rattus_norvegicus
ENSMUSG00000000339	Rtca	100	89.437	ENSRBIG00000041180	RTCA	100	89.320	Rhinopithecus_bieti
ENSMUSG00000000339	Rtca	100	90.164	ENSRROG00000024929	RTCA	100	90.164	Rhinopithecus_roxellana
ENSMUSG00000000339	Rtca	100	91.549	ENSSBOG00000028626	RTCA	100	90.164	Saimiri_boliviensis_boliviensis
ENSMUSG00000000339	Rtca	92	95.833	ENSSHAG00000001758	RTCA	100	87.705	Sarcophilus_harrisii
ENSMUSG00000000339	Rtca	100	66.197	ENSSMAG00000014680	rtca	97	68.056	Scophthalmus_maximus
ENSMUSG00000000339	Rtca	100	69.718	ENSSDUG00000015585	rtca	97	68.889	Seriola_dumerili
ENSMUSG00000000339	Rtca	100	69.014	ENSSLDG00000018985	rtca	95	69.231	Seriola_lalandi_dorsalis
ENSMUSG00000000339	Rtca	92	86.260	ENSSARG00000013993	RTCA	100	82.965	Sorex_araneus
ENSMUSG00000000339	Rtca	92	85.417	ENSSPUG00000016262	-	88	86.331	Sphenodon_punctatus
ENSMUSG00000000339	Rtca	100	68.579	ENSSPAG00000011938	rtca	99	68.579	Stegastes_partitus
ENSMUSG00000000339	Rtca	100	92.958	ENSSSCG00000006865	RTCA	100	92.350	Sus_scrofa
ENSMUSG00000000339	Rtca	100	82.394	ENSTGUG00000005154	RTCA	100	81.694	Taeniopygia_guttata
ENSMUSG00000000339	Rtca	84	63.158	ENSTRUG00000002431	-	95	66.892	Takifugu_rubripes
ENSMUSG00000000339	Rtca	100	70.423	ENSTRUG00000008799	rtca	100	69.399	Takifugu_rubripes
ENSMUSG00000000339	Rtca	100	72.535	ENSTNIG00000004725	rtca	100	70.765	Tetraodon_nigroviridis
ENSMUSG00000000339	Rtca	94	91.837	ENSTBEG00000000943	RTCA	82	64.706	Tupaia_belangeri
ENSMUSG00000000339	Rtca	100	90.141	ENSTTRG00000015327	RTCA	100	87.863	Tursiops_truncatus
ENSMUSG00000000339	Rtca	100	89.437	ENSUAMG00000017265	RTCA	96	89.443	Ursus_americanus
ENSMUSG00000000339	Rtca	100	90.164	ENSUMAG00000007881	RTCA	100	90.164	Ursus_maritimus
ENSMUSG00000000339	Rtca	100	90.845	ENSVPAG00000001039	RTCA	84	80.442	Vicugna_pacos
ENSMUSG00000000339	Rtca	100	90.984	ENSVVUG00000022041	RTCA	68	90.984	Vulpes_vulpes
ENSMUSG00000000339	Rtca	95	71.963	ENSXETG00000031661	RTCA	99	66.667	Xenopus_tropicalis
ENSMUSG00000000339	Rtca	99	68.085	ENSXCOG00000008002	rtca	100	60.383	Xiphophorus_couchianus
ENSMUSG00000000339	Rtca	100	69.399	ENSXMAG00000005482	rtca	99	69.399	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0003963	RNA-3'-phosphate cyclase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0016874	ligase activity	-	IEA	Function