EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000167856	-	6132	-	ENSMUSP00000128487	1642 (aa)	-	E9QA74
ENSMUST00000168348	-	6582	XM_011249090	ENSMUSP00000130696	2083 (aa)	XP_011247392	E9QAX2
ENSMUST00000135375	-	2014	-	ENSMUSP00000117044	501 (aa)	-	F6ZGN3
ENSMUST00000151373	-	1076	-	ENSMUSP00000123256	307 (aa)	-	E9PUR2
ENSMUST00000108376	-	7374	-	ENSMUSP00000104013	1998 (aa)	-	Q9JMH9
ENSMUST00000108375	-	7513	XM_006533603	ENSMUSP00000104012	2050 (aa)	XP_006533666	Q9JMH9
ENSMUST00000130627	-	6202	XM_006533596	ENSMUSP00000119839	2062 (aa)	XP_006533659	Q9JMH9
ENSMUST00000169105	-	6475	XM_011249092	ENSMUSP00000132149	2047 (aa)	XP_011247394	B2RRE2
ENSMUST00000164334	-	5381	XM_006533612	ENSMUSP00000131771	1719 (aa)	XP_006533675	Q9JMH9
ENSMUST00000142571	-	753	-	-	- (aa)	-	-
ENSMUST00000135045	-	496	-	-	- (aa)	-	-
ENSMUST00000100794	-	6182	-	ENSMUSP00000098358	1700 (aa)	-	E9Q405
ENSMUST00000100795	-	3040	-	-	- (aa)	-	-
ENSMUST00000134196	-	332	-	-	- (aa)	-	-
ENSMUST00000172303	-	6339	XM_006533598	ENSMUSP00000129098	1722 (aa)	XP_006533661	A0A1C7ZN10
ENSMUST00000164315	-	286	-	ENSMUSP00000129084	30 (aa)	-	E9Q0K8
ENSMUST00000000645	-	7307	-	ENSMUSP00000000645	2036 (aa)	-	K3W4L0
ENSMUST00000130956	-	337	-	-	- (aa)	-	-
ENSMUST00000154892	-	325	-	-	- (aa)	-	-
ENSMUST00000102488	-	7409	-	ENSMUSP00000099546	2035 (aa)	-	Q9JMH9
ENSMUST00000100443	-	3807	-	-	- (aa)	-	-
ENSMUST00000130305	-	5450	-	ENSMUSP00000119574	1716 (aa)	-	Q9JMH9
ENSMUST00000092884	-	5117	-	ENSMUSP00000090560	1704 (aa)	-	Q9JMH9
ENSMUST00000092887	-	7304	XM_006533606	ENSMUSP00000090563	2035 (aa)	XP_006533669	Q9JMH9

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000000631	Myo18a	100	100.000	ENSG00000196535	MYO18A	100	94.507	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003774	motor activity	-	IEA	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0005856	cytoskeleton	10733906.	IDA	Component
GO:0005903	brush border	22114352.	IDA	Component
GO:0007030	Golgi organization	-	ISO	Process
GO:0016459	myosin complex	-	IEA	Component
GO:0016477	cell migration	-	ISO	Process
GO:0031032	actomyosin structure organization	-	ISO	Process
GO:0042641	actomyosin	-	ISO	Component
GO:0043030	regulation of macrophage activation	25965346.	IMP	Process
GO:0043030	regulation of macrophage activation	-	ISO	Process
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043531	ADP binding	-	ISO	Function
GO:0045335	phagocytic vesicle	19144319.	IDA	Component
GO:0048194	Golgi vesicle budding	-	ISO	Process
GO:0050714	positive regulation of protein secretion	-	ISO	Process
GO:0051015	actin filament binding	-	ISO	Function
GO:0071346	cellular response to interferon-gamma	19144319.	IDA	Process
GO:0090161	Golgi ribbon formation	-	ISO	Process
GO:0090164	asymmetric Golgi ribbon formation	-	ISO	Process
GO:1903028	positive regulation of opsonization	21123169.	IMP	Process
GO:1903028	positive regulation of opsonization	-	ISO	Process