EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001056 (Gene tree)
Gene ID: 52530
Gene Symbol: Nhp2
Alias: 2410130M07Rik|D11Ertd175e|H/ACA small nucleolar RNPs|NHP2|Nola2
Full Name: NHP2 ribonucleoprotein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 3980 bases
Position: chr11:51619735-51623714
Accession: 1098547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000120014	Ribosomal_L7Ae	PF01248.26	3.1e-23	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127405	-	1042	-	ENSMUSP00000120014	153 (aa)	-	Q9CRB2
ENSMUST00000001083	-	825	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000001056's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001056's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000001056	Nhp2	66	42.718	ENSMUSG00000063480	Snu13	95	36.885

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001056	Nhp2	100	89.542	ENSG00000145912	NHP2	100	89.542	Homo_sapiens
ENSMUSG00000001056	Nhp2	100	66.013	ENSAPOG00000004742	nhp2	100	66.013	Acanthochromis_polyacanthus
ENSMUSG00000001056	Nhp2	100	88.889	ENSAMEG00000006471	NHP2	100	88.889	Ailuropoda_melanoleuca
ENSMUSG00000001056	Nhp2	86	72.727	ENSACIG00000007968	nhp2	100	67.722	Amphilophus_citrinellus
ENSMUSG00000001056	Nhp2	100	66.013	ENSAOCG00000016311	nhp2	100	66.013	Amphiprion_ocellaris
ENSMUSG00000001056	Nhp2	100	66.013	ENSAPEG00000008765	nhp2	100	66.013	Amphiprion_percula
ENSMUSG00000001056	Nhp2	88	71.852	ENSATEG00000009651	nhp2	100	68.590	Anabas_testudineus
ENSMUSG00000001056	Nhp2	86	81.818	ENSACAG00000006692	NHP2	99	75.000	Anolis_carolinensis
ENSMUSG00000001056	Nhp2	84	75.194	ENSANAG00000031552	-	99	75.194	Aotus_nancymaae
ENSMUSG00000001056	Nhp2	100	88.889	ENSANAG00000023290	NHP2	100	88.889	Aotus_nancymaae
ENSMUSG00000001056	Nhp2	87	73.684	ENSACLG00000001082	nhp2	100	69.032	Astatotilapia_calliptera
ENSMUSG00000001056	Nhp2	100	71.242	ENSAMXG00000005845	nhp2	100	71.242	Astyanax_mexicanus
ENSMUSG00000001056	Nhp2	100	88.235	ENSBTAG00000006374	NHP2	100	88.235	Bos_taurus
ENSMUSG00000001056	Nhp2	91	46.853	WBGene00012964	Y48A6B.3	88	46.853	Caenorhabditis_elegans
ENSMUSG00000001056	Nhp2	98	88.667	ENSCJAG00000023093	-	98	88.667	Callithrix_jacchus
ENSMUSG00000001056	Nhp2	100	88.235	ENSCJAG00000038564	-	100	88.235	Callithrix_jacchus
ENSMUSG00000001056	Nhp2	100	88.889	ENSCAFG00000000240	NHP2	100	88.889	Canis_familiaris
ENSMUSG00000001056	Nhp2	100	88.235	ENSCHIG00000015159	NHP2	100	88.235	Capra_hircus
ENSMUSG00000001056	Nhp2	100	63.399	ENSTSYG00000008150	NHP2	100	63.399	Carlito_syrichta
ENSMUSG00000001056	Nhp2	100	89.542	ENSCPOG00000033753	NHP2	100	89.542	Cavia_porcellus
ENSMUSG00000001056	Nhp2	100	72.549	ENSCCAG00000034664	-	100	72.549	Cebus_capucinus
ENSMUSG00000001056	Nhp2	100	73.856	ENSCCAG00000027964	-	100	73.856	Cebus_capucinus
ENSMUSG00000001056	Nhp2	100	88.889	ENSCCAG00000034815	NHP2	100	88.889	Cebus_capucinus
ENSMUSG00000001056	Nhp2	100	89.542	ENSCATG00000043608	NHP2	100	89.542	Cercocebus_atys
ENSMUSG00000001056	Nhp2	100	86.928	ENSCLAG00000016005	NHP2	100	86.928	Chinchilla_lanigera
ENSMUSG00000001056	Nhp2	100	89.542	ENSCSAG00000008690	NHP2	100	89.542	Chlorocebus_sabaeus
ENSMUSG00000001056	Nhp2	100	87.582	ENSCHOG00000013038	NHP2	100	87.582	Choloepus_hoffmanni
ENSMUSG00000001056	Nhp2	86	80.303	ENSCPBG00000022106	NHP2	95	75.168	Chrysemys_picta_bellii
ENSMUSG00000001056	Nhp2	87	64.662	ENSCSAVG00000008036	-	88	64.662	Ciona_savignyi
ENSMUSG00000001056	Nhp2	100	88.889	ENSCANG00000031562	NHP2	100	88.889	Colobus_angolensis_palliatus
ENSMUSG00000001056	Nhp2	95	84.138	ENSCANG00000038441	-	92	90.000	Colobus_angolensis_palliatus
ENSMUSG00000001056	Nhp2	100	96.078	ENSCGRG00001005326	Nhp2	100	96.078	Cricetulus_griseus_chok1gshd
ENSMUSG00000001056	Nhp2	100	96.078	ENSCGRG00000013680	Nhp2	100	96.078	Cricetulus_griseus_crigri
ENSMUSG00000001056	Nhp2	100	69.032	ENSCSEG00000006761	nhp2	100	69.032	Cynoglossus_semilaevis
ENSMUSG00000001056	Nhp2	100	66.667	ENSDARG00000069422	nhp2	100	66.667	Danio_rerio
ENSMUSG00000001056	Nhp2	100	87.582	ENSDNOG00000017150	NHP2	94	87.582	Dasypus_novemcinctus
ENSMUSG00000001056	Nhp2	100	88.889	ENSDORG00000003312	Nhp2	100	88.889	Dipodomys_ordii
ENSMUSG00000001056	Nhp2	88	46.667	FBgn0029148	NHP2	84	46.667	Drosophila_melanogaster
ENSMUSG00000001056	Nhp2	100	85.714	ENSETEG00000006774	NHP2	100	85.714	Echinops_telfairi
ENSMUSG00000001056	Nhp2	100	88.235	ENSEASG00005012569	NHP2	100	88.235	Equus_asinus_asinus
ENSMUSG00000001056	Nhp2	95	89.655	ENSECAG00000022963	NHP2	83	89.655	Equus_caballus
ENSMUSG00000001056	Nhp2	65	78.000	ENSELUG00000021981	nhp2	85	78.000	Esox_lucius
ENSMUSG00000001056	Nhp2	100	88.889	ENSFCAG00000015541	NHP2	100	88.889	Felis_catus
ENSMUSG00000001056	Nhp2	86	79.389	ENSFALG00000008774	NHP2	93	74.324	Ficedula_albicollis
ENSMUSG00000001056	Nhp2	100	80.392	ENSFDAG00000008131	NHP2	100	80.392	Fukomys_damarensis
ENSMUSG00000001056	Nhp2	100	69.231	ENSFHEG00000000431	nhp2	100	69.231	Fundulus_heteroclitus
ENSMUSG00000001056	Nhp2	88	76.296	ENSGMOG00000000278	nhp2	95	73.611	Gadus_morhua
ENSMUSG00000001056	Nhp2	79	80.165	ENSGALG00000033666	NHP2	82	74.453	Gallus_gallus
ENSMUSG00000001056	Nhp2	87	74.436	ENSGAFG00000009838	nhp2	100	69.231	Gambusia_affinis
ENSMUSG00000001056	Nhp2	100	64.706	ENSGACG00000020889	nhp2	98	67.105	Gasterosteus_aculeatus
ENSMUSG00000001056	Nhp2	65	78.218	ENSGAGG00000006901	NHP2	81	78.218	Gopherus_agassizii
ENSMUSG00000001056	Nhp2	100	75.817	ENSGGOG00000027198	-	100	75.817	Gorilla_gorilla
ENSMUSG00000001056	Nhp2	100	75.817	ENSGGOG00000040409	-	100	75.817	Gorilla_gorilla
ENSMUSG00000001056	Nhp2	86	74.242	ENSHBUG00000010207	nhp2	100	69.677	Haplochromis_burtoni
ENSMUSG00000001056	Nhp2	100	79.085	ENSHGLG00000014450	-	100	79.085	Heterocephalus_glaber_female
ENSMUSG00000001056	Nhp2	100	88.889	ENSHGLG00000013630	NHP2	100	88.889	Heterocephalus_glaber_female
ENSMUSG00000001056	Nhp2	100	88.889	ENSHGLG00100007298	NHP2	100	88.889	Heterocephalus_glaber_male
ENSMUSG00000001056	Nhp2	100	79.085	ENSHGLG00100003440	-	100	79.085	Heterocephalus_glaber_male
ENSMUSG00000001056	Nhp2	100	79.085	ENSHGLG00100005282	-	100	79.085	Heterocephalus_glaber_male
ENSMUSG00000001056	Nhp2	100	68.354	ENSHCOG00000019552	nhp2	100	68.354	Hippocampus_comes
ENSMUSG00000001056	Nhp2	100	74.510	ENSIPUG00000024197	NHP2	100	74.510	Ictalurus_punctatus
ENSMUSG00000001056	Nhp2	100	88.889	ENSSTOG00000003235	NHP2	100	88.889	Ictidomys_tridecemlineatus
ENSMUSG00000001056	Nhp2	100	84.314	ENSJJAG00000016469	Nhp2	100	86.275	Jaculus_jaculus
ENSMUSG00000001056	Nhp2	99	65.132	ENSLBEG00000002128	nhp2	98	65.132	Labrus_bergylta
ENSMUSG00000001056	Nhp2	100	72.727	ENSLACG00000017167	NHP2	99	72.727	Latimeria_chalumnae
ENSMUSG00000001056	Nhp2	88	76.296	ENSLOCG00000009630	nhp2	100	70.588	Lepisosteus_oculatus
ENSMUSG00000001056	Nhp2	100	86.928	ENSLAFG00000012828	NHP2	100	86.928	Loxodonta_africana
ENSMUSG00000001056	Nhp2	100	89.542	ENSMFAG00000032376	NHP2	100	89.542	Macaca_fascicularis
ENSMUSG00000001056	Nhp2	100	66.667	ENSMMUG00000046673	-	100	66.667	Macaca_mulatta
ENSMUSG00000001056	Nhp2	100	89.542	ENSMNEG00000038787	NHP2	100	89.542	Macaca_nemestrina
ENSMUSG00000001056	Nhp2	100	89.542	ENSMLEG00000028639	NHP2	100	89.542	Mandrillus_leucophaeus
ENSMUSG00000001056	Nhp2	99	66.447	ENSMAMG00000022425	nhp2	98	66.447	Mastacembelus_armatus
ENSMUSG00000001056	Nhp2	87	73.684	ENSMZEG00005027834	nhp2	100	69.032	Maylandia_zebra
ENSMUSG00000001056	Nhp2	65	79.000	ENSMGAG00000003917	NHP2	100	79.000	Meleagris_gallopavo
ENSMUSG00000001056	Nhp2	100	88.235	ENSMICG00000005379	NHP2	100	88.235	Microcebus_murinus
ENSMUSG00000001056	Nhp2	100	94.118	ENSMOCG00000022171	Nhp2	100	94.118	Microtus_ochrogaster
ENSMUSG00000001056	Nhp2	90	70.073	ENSMMOG00000016811	nhp2	98	67.105	Mola_mola
ENSMUSG00000001056	Nhp2	100	81.818	ENSMODG00000004231	NHP2	100	81.818	Monodelphis_domestica
ENSMUSG00000001056	Nhp2	100	67.308	ENSMALG00000009613	nhp2	100	67.308	Monopterus_albus
ENSMUSG00000001056	Nhp2	100	99.346	MGP_CAROLIEiJ_G0016312	Nhp2	100	99.346	Mus_caroli
ENSMUSG00000001056	Nhp2	100	99.346	MGP_PahariEiJ_G0017447	Nhp2	100	99.346	Mus_pahari
ENSMUSG00000001056	Nhp2	100	100.000	MGP_SPRETEiJ_G0017156	Nhp2	100	100.000	Mus_spretus
ENSMUSG00000001056	Nhp2	100	87.742	ENSMPUG00000000747	NHP2	100	87.742	Mustela_putorius_furo
ENSMUSG00000001056	Nhp2	100	89.542	ENSMLUG00000003377	NHP2	100	89.542	Myotis_lucifugus
ENSMUSG00000001056	Nhp2	100	89.542	ENSNGAG00000021818	Nhp2	100	89.542	Nannospalax_galili
ENSMUSG00000001056	Nhp2	86	75.000	ENSNBRG00000018016	nhp2	100	70.323	Neolamprologus_brichardi
ENSMUSG00000001056	Nhp2	100	77.987	ENSNLEG00000015765	NHP2	100	77.987	Nomascus_leucogenys
ENSMUSG00000001056	Nhp2	100	81.169	ENSMEUG00000003839	NHP2	100	81.169	Notamacropus_eugenii
ENSMUSG00000001056	Nhp2	100	71.242	ENSOPRG00000007907	NHP2	100	71.242	Ochotona_princeps
ENSMUSG00000001056	Nhp2	100	88.889	ENSODEG00000006948	NHP2	100	88.889	Octodon_degus
ENSMUSG00000001056	Nhp2	86	75.758	ENSONIG00000017865	nhp2	100	70.968	Oreochromis_niloticus
ENSMUSG00000001056	Nhp2	99	88.816	ENSOCUG00000016057	-	99	88.816	Oryctolagus_cuniculus
ENSMUSG00000001056	Nhp2	99	88.158	ENSOCUG00000016091	-	99	88.158	Oryctolagus_cuniculus
ENSMUSG00000001056	Nhp2	100	71.242	ENSORLG00000029195	nhp2	100	71.242	Oryzias_latipes
ENSMUSG00000001056	Nhp2	100	71.242	ENSORLG00020003277	nhp2	100	71.242	Oryzias_latipes_hni
ENSMUSG00000001056	Nhp2	100	71.242	ENSORLG00015007851	nhp2	100	71.242	Oryzias_latipes_hsok
ENSMUSG00000001056	Nhp2	87	75.188	ENSOMEG00000017381	nhp2	78	75.188	Oryzias_melastigma
ENSMUSG00000001056	Nhp2	100	87.097	ENSOGAG00000016108	NHP2	100	87.097	Otolemur_garnettii
ENSMUSG00000001056	Nhp2	100	80.392	ENSOARG00000006274	NHP2	100	80.392	Ovis_aries
ENSMUSG00000001056	Nhp2	100	89.542	ENSPPAG00000028668	NHP2	100	89.542	Pan_paniscus
ENSMUSG00000001056	Nhp2	100	76.471	ENSPPAG00000038834	-	100	76.471	Pan_paniscus
ENSMUSG00000001056	Nhp2	100	88.889	ENSPPRG00000022505	NHP2	100	88.889	Panthera_pardus
ENSMUSG00000001056	Nhp2	61	91.489	ENSPTIG00000021731	NHP2	81	92.157	Panthera_tigris_altaica
ENSMUSG00000001056	Nhp2	93	78.873	ENSPTRG00000050430	-	99	78.873	Pan_troglodytes
ENSMUSG00000001056	Nhp2	93	78.873	ENSPTRG00000049011	-	99	78.873	Pan_troglodytes
ENSMUSG00000001056	Nhp2	100	88.889	ENSPTRG00000048185	NHP2	100	88.889	Pan_troglodytes
ENSMUSG00000001056	Nhp2	100	89.542	ENSPANG00000019121	NHP2	100	89.542	Papio_anubis
ENSMUSG00000001056	Nhp2	87	77.444	ENSPKIG00000006410	nhp2	100	71.242	Paramormyrops_kingsleyae
ENSMUSG00000001056	Nhp2	100	68.712	ENSPMGG00000002916	nhp2	100	68.712	Periophthalmus_magnuspinnatus
ENSMUSG00000001056	Nhp2	100	95.425	ENSPEMG00000023567	Nhp2	100	95.425	Peromyscus_maniculatus_bairdii
ENSMUSG00000001056	Nhp2	95	63.448	ENSPMAG00000009888	nhp2	94	63.448	Petromyzon_marinus
ENSMUSG00000001056	Nhp2	100	81.169	ENSPCIG00000002727	-	100	81.169	Phascolarctos_cinereus
ENSMUSG00000001056	Nhp2	72	81.818	ENSPCIG00000019848	-	92	81.818	Phascolarctos_cinereus
ENSMUSG00000001056	Nhp2	100	66.026	ENSPFOG00000002315	nhp2	100	66.026	Poecilia_formosa
ENSMUSG00000001056	Nhp2	100	65.385	ENSPLAG00000019287	nhp2	100	65.385	Poecilia_latipinna
ENSMUSG00000001056	Nhp2	100	66.026	ENSPMEG00000024346	nhp2	100	66.026	Poecilia_mexicana
ENSMUSG00000001056	Nhp2	73	69.369	ENSPREG00000005005	nhp2	95	69.369	Poecilia_reticulata
ENSMUSG00000001056	Nhp2	100	88.889	ENSPPYG00000016105	NHP2	100	88.889	Pongo_abelii
ENSMUSG00000001056	Nhp2	100	88.889	ENSPCOG00000020708	NHP2	100	88.889	Propithecus_coquereli
ENSMUSG00000001056	Nhp2	100	88.235	ENSPVAG00000001647	NHP2	100	88.235	Pteropus_vampyrus
ENSMUSG00000001056	Nhp2	86	74.242	ENSPNYG00000022418	nhp2	100	69.677	Pundamilia_nyererei
ENSMUSG00000001056	Nhp2	100	67.974	ENSPNAG00000013779	nhp2	100	67.974	Pygocentrus_nattereri
ENSMUSG00000001056	Nhp2	100	75.163	ENSRNOG00000004247	Nhp2	100	75.163	Rattus_norvegicus
ENSMUSG00000001056	Nhp2	100	95.425	ENSRNOG00000049622	LOC103690013	100	95.425	Rattus_norvegicus
ENSMUSG00000001056	Nhp2	100	89.542	ENSRBIG00000018610	NHP2	100	89.542	Rhinopithecus_bieti
ENSMUSG00000001056	Nhp2	100	89.542	ENSRROG00000043373	NHP2	100	89.542	Rhinopithecus_roxellana
ENSMUSG00000001056	Nhp2	100	73.856	ENSRROG00000044295	-	100	73.856	Rhinopithecus_roxellana
ENSMUSG00000001056	Nhp2	76	50.781	YDL208W	-	82	50.781	Saccharomyces_cerevisiae
ENSMUSG00000001056	Nhp2	100	88.889	ENSSBOG00000027889	NHP2	100	88.889	Saimiri_boliviensis_boliviensis
ENSMUSG00000001056	Nhp2	100	80.519	ENSSHAG00000015581	NHP2	100	80.519	Sarcophilus_harrisii
ENSMUSG00000001056	Nhp2	100	69.935	ENSSFOG00015017061	nhp2	100	69.935	Scleropages_formosus
ENSMUSG00000001056	Nhp2	88	71.111	ENSSMAG00000011251	nhp2	100	68.153	Scophthalmus_maximus
ENSMUSG00000001056	Nhp2	100	67.974	ENSSDUG00000023355	nhp2	100	67.974	Seriola_dumerili
ENSMUSG00000001056	Nhp2	73	70.270	ENSSLDG00000006293	nhp2	51	70.270	Seriola_lalandi_dorsalis
ENSMUSG00000001056	Nhp2	87	82.707	ENSSPUG00000005173	NHP2	88	82.707	Sphenodon_punctatus
ENSMUSG00000001056	Nhp2	100	65.359	ENSSPAG00000011696	nhp2	100	65.359	Stegastes_partitus
ENSMUSG00000001056	Nhp2	100	86.928	ENSSSCG00000039635	-	86	86.928	Sus_scrofa
ENSMUSG00000001056	Nhp2	100	69.281	ENSSSCG00000009710	-	100	69.281	Sus_scrofa
ENSMUSG00000001056	Nhp2	65	71.717	ENSTGUG00000000368	NHP2	92	68.182	Taeniopygia_guttata
ENSMUSG00000001056	Nhp2	86	75.000	ENSTRUG00000008183	nhp2	87	73.050	Takifugu_rubripes
ENSMUSG00000001056	Nhp2	88	66.187	ENSTNIG00000004219	nhp2	98	61.875	Tetraodon_nigroviridis
ENSMUSG00000001056	Nhp2	100	88.889	ENSUAMG00000025154	NHP2	100	88.889	Ursus_americanus
ENSMUSG00000001056	Nhp2	99	88.742	ENSUMAG00000023916	NHP2	97	88.742	Ursus_maritimus
ENSMUSG00000001056	Nhp2	73	84.685	ENSVPAG00000010059	NHP2	100	84.685	Vicugna_pacos
ENSMUSG00000001056	Nhp2	100	75.556	ENSVVUG00000001030	NHP2	100	75.556	Vulpes_vulpes
ENSMUSG00000001056	Nhp2	97	72.973	ENSXETG00000006731	nhp2	98	72.973	Xenopus_tropicalis
ENSMUSG00000001056	Nhp2	87	74.436	ENSXMAG00000007031	nhp2	100	69.231	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000469	cleavage involved in rRNA processing	21873635.	IBA	Process
GO:0000470	maturation of LSU-rRNA	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005515	protein binding	23685356.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005697	telomerase holoenzyme complex	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0007004	telomere maintenance via telomerase	-	ISO	Process
GO:0031118	rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031120	snRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0031429	box H/ACA snoRNP complex	-	ISO	Component
GO:0034513	box H/ACA snoRNA binding	21873635.	IBA	Function
GO:0034513	box H/ACA snoRNA binding	-	ISO	Function
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0070034	telomerase RNA binding	-	ISO	Function
GO:0090661	box H/ACA telomerase RNP complex	-	ISO	Component