EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001120 (Gene tree)
Gene ID: 59093
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 200031 bases
Position: chr10:76761857-76961887
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000101051	KH_1	PF00013.29	3.8e-55	1	3
ENSMUSP00000101051	KH_1	PF00013.29	3.8e-55	2	3
ENSMUSP00000101051	KH_1	PF00013.29	3.8e-55	3	3
ENSMUSP00000001148	KH_1	PF00013.29	3.8e-55	1	3
ENSMUSP00000001148	KH_1	PF00013.29	3.8e-55	2	3
ENSMUSP00000001148	KH_1	PF00013.29	3.8e-55	3	3
ENSMUSP00000129465	KH_1	PF00013.29	3.8e-55	1	3
ENSMUSP00000129465	KH_1	PF00013.29	3.8e-55	2	3
ENSMUSP00000129465	KH_1	PF00013.29	3.8e-55	3	3
ENSMUSP00000134144	KH_1	PF00013.29	1e-18	1	1
ENSMUSP00000101051	KH_2	PF07650.17	5e-15	1	1
ENSMUSP00000001148	KH_2	PF07650.17	5e-15	1	1
ENSMUSP00000129465	KH_2	PF07650.17	5e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000001148	-	2013	XM_006513916	ENSMUSP00000001148	371 (aa)	XP_006513979	P57722
ENSMUST00000092393	-	944	-	ENSMUSP00000090048	226 (aa)	-	E9Q7D8
ENSMUST00000173854	-	605	-	ENSMUSP00000134144	161 (aa)	-	G3UYM5
ENSMUST00000168240	-	1095	-	-	- (aa)	-	-
ENSMUST00000168505	-	1736	NR_152849	-	- (aa)	-	-
ENSMUST00000168465	-	1748	XM_017314036	ENSMUSP00000129465	371 (aa)	XP_017169525	P57722
ENSMUST00000105411	-	2544	XM_006513920	ENSMUSP00000101051	370 (aa)	XP_006513983	P57722
ENSMUST00000165571	-	337	-	-	- (aa)	-	-
ENSMUST00000171437	-	717	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000001120's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001120's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000001120	Pcbp3	72	40.351	ENSMUSG00000021047	Nova1	59	37.037
ENSMUSG00000001120	Pcbp3	85	69.811	ENSMUSG00000023495	Pcbp4	91	73.529
ENSMUSG00000001120	Pcbp3	99	82.143	ENSMUSG00000056851	Pcbp2	100	85.119
ENSMUSG00000001120	Pcbp3	99	65.873	ENSMUSG00000051695	Pcbp1	99	66.484
ENSMUSG00000001120	Pcbp3	89	37.037	ENSMUSG00000033581	Igf2bp2	70	33.529
ENSMUSG00000001120	Pcbp3	85	31.973	ENSMUSG00000026843	Fubp3	77	31.973
ENSMUSG00000001120	Pcbp3	86	35.000	ENSMUSG00000029814	Igf2bp3	59	33.813
ENSMUSG00000001120	Pcbp3	79	41.667	ENSMUSG00000021546	Hnrnpk	80	31.892
ENSMUSG00000001120	Pcbp3	66	31.250	ENSMUSG00000028034	Fubp1	72	33.019
ENSMUSG00000001120	Pcbp3	66	33.582	ENSMUSG00000013415	Igf2bp1	60	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001120	Pcbp3	99	98.758	ENSG00000183570	PCBP3	100	97.305	Homo_sapiens
ENSMUSG00000001120	Pcbp3	99	73.362	ENSAPOG00000023735	zgc:110045	99	71.930	Acanthochromis_polyacanthus
ENSMUSG00000001120	Pcbp3	92	74.057	ENSACIG00000002577	zgc:110045	97	73.239	Amphilophus_citrinellus
ENSMUSG00000001120	Pcbp3	90	71.845	ENSAOCG00000005266	zgc:110045	98	71.292	Amphiprion_ocellaris
ENSMUSG00000001120	Pcbp3	99	73.362	ENSAPEG00000000729	zgc:110045	72	72.289	Amphiprion_percula
ENSMUSG00000001120	Pcbp3	93	67.333	ENSATEG00000011191	zgc:110045	61	77.193	Anabas_testudineus
ENSMUSG00000001120	Pcbp3	99	73.799	ENSACLG00000019285	zgc:110045	72	72.892	Astatotilapia_calliptera
ENSMUSG00000001120	Pcbp3	99	99.379	ENSBTAG00000030775	PCBP3	100	93.629	Bos_taurus
ENSMUSG00000001120	Pcbp3	100	97.574	ENSCAFG00000011907	PCBP3	100	97.574	Canis_familiaris
ENSMUSG00000001120	Pcbp3	99	95.913	ENSCHIG00000015841	PCBP3	98	95.913	Capra_hircus
ENSMUSG00000001120	Pcbp3	96	83.607	ENSTSYG00000005254	PCBP3	96	83.607	Carlito_syrichta
ENSMUSG00000001120	Pcbp3	99	83.051	ENSCAPG00000006767	PCBP3	91	78.320	Cavia_aperea
ENSMUSG00000001120	Pcbp3	100	98.113	ENSCPOG00000003648	PCBP3	100	98.113	Cavia_porcellus
ENSMUSG00000001120	Pcbp3	99	98.758	ENSCCAG00000024561	PCBP3	100	97.305	Cebus_capucinus
ENSMUSG00000001120	Pcbp3	99	98.758	ENSCATG00000038419	PCBP3	100	97.035	Cercocebus_atys
ENSMUSG00000001120	Pcbp3	100	97.574	ENSCLAG00000006667	PCBP3	100	97.574	Chinchilla_lanigera
ENSMUSG00000001120	Pcbp3	99	98.758	ENSCANG00000026757	PCBP3	100	96.765	Colobus_angolensis_palliatus
ENSMUSG00000001120	Pcbp3	100	99.461	ENSCGRG00001006836	Pcbp3	100	99.461	Cricetulus_griseus_chok1gshd
ENSMUSG00000001120	Pcbp3	100	99.461	ENSCGRG00000001837	Pcbp3	100	99.461	Cricetulus_griseus_crigri
ENSMUSG00000001120	Pcbp3	99	72.609	ENSCSEG00000010020	zgc:110045	97	72.609	Cynoglossus_semilaevis
ENSMUSG00000001120	Pcbp3	92	70.813	ENSCVAG00000004726	zgc:110045	94	70.813	Cyprinodon_variegatus
ENSMUSG00000001120	Pcbp3	95	76.444	ENSDARG00000057141	zgc:110045	97	76.444	Danio_rerio
ENSMUSG00000001120	Pcbp3	99	95.368	ENSDNOG00000049518	PCBP3	100	95.368	Dasypus_novemcinctus
ENSMUSG00000001120	Pcbp3	99	87.097	ENSDORG00000003640	Pcbp3	100	87.097	Dipodomys_ordii
ENSMUSG00000001120	Pcbp3	99	76.444	ENSEBUG00000009697	zgc:110045	99	77.612	Eptatretus_burgeri
ENSMUSG00000001120	Pcbp3	99	98.758	ENSEASG00005007068	PCBP3	100	91.914	Equus_asinus_asinus
ENSMUSG00000001120	Pcbp3	99	98.758	ENSECAG00000012413	PCBP3	100	91.914	Equus_caballus
ENSMUSG00000001120	Pcbp3	99	72.727	ENSELUG00000019784	zgc:110045	72	71.257	Esox_lucius
ENSMUSG00000001120	Pcbp3	99	98.758	ENSFCAG00000014812	PCBP3	100	97.305	Felis_catus
ENSMUSG00000001120	Pcbp3	100	97.574	ENSFDAG00000009117	PCBP3	100	97.574	Fukomys_damarensis
ENSMUSG00000001120	Pcbp3	99	63.713	ENSFHEG00000018838	-	92	73.632	Fundulus_heteroclitus
ENSMUSG00000001120	Pcbp3	97	69.957	ENSGMOG00000005953	zgc:110045	98	69.075	Gadus_morhua
ENSMUSG00000001120	Pcbp3	92	77.830	ENSGAFG00000017864	zgc:110045	93	77.830	Gambusia_affinis
ENSMUSG00000001120	Pcbp3	99	73.043	ENSGACG00000003044	zgc:110045	99	71.720	Gasterosteus_aculeatus
ENSMUSG00000001120	Pcbp3	99	98.758	ENSGGOG00000003683	PCBP3	100	97.035	Gorilla_gorilla
ENSMUSG00000001120	Pcbp3	99	73.799	ENSHBUG00000012495	zgc:110045	99	72.515	Haplochromis_burtoni
ENSMUSG00000001120	Pcbp3	99	97.011	ENSHGLG00000018620	PCBP3	99	97.011	Heterocephalus_glaber_female
ENSMUSG00000001120	Pcbp3	99	97.011	ENSHGLG00100013590	PCBP3	99	97.011	Heterocephalus_glaber_male
ENSMUSG00000001120	Pcbp3	94	74.528	ENSHCOG00000000818	zgc:110045	97	72.986	Hippocampus_comes
ENSMUSG00000001120	Pcbp3	90	75.481	ENSIPUG00000003932	zgc:110045	77	75.481	Ictalurus_punctatus
ENSMUSG00000001120	Pcbp3	100	98.383	ENSSTOG00000007178	PCBP3	100	98.383	Ictidomys_tridecemlineatus
ENSMUSG00000001120	Pcbp3	100	98.383	ENSJJAG00000021192	Pcbp3	100	98.383	Jaculus_jaculus
ENSMUSG00000001120	Pcbp3	84	80.952	ENSKMAG00000016179	-	90	80.952	Kryptolebias_marmoratus
ENSMUSG00000001120	Pcbp3	99	70.044	ENSLBEG00000023074	zgc:110045	99	70.468	Labrus_bergylta
ENSMUSG00000001120	Pcbp3	99	98.758	ENSLAFG00000020835	PCBP3	100	97.935	Loxodonta_africana
ENSMUSG00000001120	Pcbp3	99	98.758	ENSMFAG00000034574	PCBP3	100	97.035	Macaca_fascicularis
ENSMUSG00000001120	Pcbp3	99	98.758	ENSMMUG00000003825	PCBP3	100	97.035	Macaca_mulatta
ENSMUSG00000001120	Pcbp3	99	98.758	ENSMNEG00000035551	PCBP3	100	97.035	Macaca_nemestrina
ENSMUSG00000001120	Pcbp3	99	98.758	ENSMLEG00000038785	PCBP3	100	97.035	Mandrillus_leucophaeus
ENSMUSG00000001120	Pcbp3	99	73.362	ENSMAMG00000014389	zgc:110045	99	72.205	Mastacembelus_armatus
ENSMUSG00000001120	Pcbp3	99	73.799	ENSMZEG00005011785	zgc:110045	72	72.892	Maylandia_zebra
ENSMUSG00000001120	Pcbp3	100	98.922	ENSMAUG00000007036	Pcbp3	100	98.922	Mesocricetus_auratus
ENSMUSG00000001120	Pcbp3	99	99.379	ENSMICG00000012679	PCBP3	100	96.765	Microcebus_murinus
ENSMUSG00000001120	Pcbp3	100	99.191	ENSMOCG00000016127	Pcbp3	100	99.191	Microtus_ochrogaster
ENSMUSG00000001120	Pcbp3	80	80.556	ENSMMOG00000008399	zgc:110045	85	80.556	Mola_mola
ENSMUSG00000001120	Pcbp3	84	76.440	ENSMALG00000008763	zgc:110045	92	76.440	Monopterus_albus
ENSMUSG00000001120	Pcbp3	100	100.000	MGP_CAROLIEiJ_G0015475	Pcbp3	100	100.000	Mus_caroli
ENSMUSG00000001120	Pcbp3	100	100.000	MGP_PahariEiJ_G0030889	Pcbp3	100	100.000	Mus_pahari
ENSMUSG00000001120	Pcbp3	100	100.000	MGP_SPRETEiJ_G0016288	Pcbp3	100	100.000	Mus_spretus
ENSMUSG00000001120	Pcbp3	99	95.067	ENSMLUG00000003074	PCBP3	99	93.207	Myotis_lucifugus
ENSMUSG00000001120	Pcbp3	100	98.383	ENSNGAG00000005416	Pcbp3	100	98.383	Nannospalax_galili
ENSMUSG00000001120	Pcbp3	99	73.799	ENSNBRG00000017646	zgc:110045	72	72.892	Neolamprologus_brichardi
ENSMUSG00000001120	Pcbp3	99	98.758	ENSNLEG00000002639	PCBP3	100	97.035	Nomascus_leucogenys
ENSMUSG00000001120	Pcbp3	99	85.772	ENSMEUG00000012960	PCBP3	100	87.812	Notamacropus_eugenii
ENSMUSG00000001120	Pcbp3	99	95.935	ENSODEG00000012873	PCBP3	100	95.935	Octodon_degus
ENSMUSG00000001120	Pcbp3	99	73.799	ENSONIG00000010370	zgc:110045	76	72.892	Oreochromis_niloticus
ENSMUSG00000001120	Pcbp3	98	85.714	ENSOANG00000006265	PCBP3	98	90.288	Ornithorhynchus_anatinus
ENSMUSG00000001120	Pcbp3	99	72.926	ENSORLG00000014385	-	72	72.289	Oryzias_latipes
ENSMUSG00000001120	Pcbp3	99	72.926	ENSORLG00020003139	zgc:110045	87	73.585	Oryzias_latipes_hni
ENSMUSG00000001120	Pcbp3	99	72.489	ENSOMEG00000015459	-	72	71.988	Oryzias_melastigma
ENSMUSG00000001120	Pcbp3	100	91.129	ENSOARG00000012704	PCBP3	100	91.129	Ovis_aries
ENSMUSG00000001120	Pcbp3	99	98.758	ENSPPAG00000021940	PCBP3	100	97.035	Pan_paniscus
ENSMUSG00000001120	Pcbp3	99	98.758	ENSPPRG00000003933	PCBP3	100	97.305	Panthera_pardus
ENSMUSG00000001120	Pcbp3	93	98.675	ENSPTIG00000012038	PCBP3	100	83.558	Panthera_tigris_altaica
ENSMUSG00000001120	Pcbp3	94	92.715	ENSPTRG00000014010	PCBP3	99	74.797	Pan_troglodytes
ENSMUSG00000001120	Pcbp3	99	98.758	ENSPANG00000023631	PCBP3	100	97.035	Papio_anubis
ENSMUSG00000001120	Pcbp3	80	73.889	ENSPMGG00000021588	-	72	61.404	Periophthalmus_magnuspinnatus
ENSMUSG00000001120	Pcbp3	89	74.752	ENSPMGG00000022531	-	93	73.892	Periophthalmus_magnuspinnatus
ENSMUSG00000001120	Pcbp3	100	99.461	ENSPEMG00000000587	Pcbp3	100	99.461	Peromyscus_maniculatus_bairdii
ENSMUSG00000001120	Pcbp3	67	75.833	ENSPMAG00000004719	zgc:110045	98	72.308	Petromyzon_marinus
ENSMUSG00000001120	Pcbp3	99	73.362	ENSPFOG00000002348	zgc:110045	98	71.810	Poecilia_formosa
ENSMUSG00000001120	Pcbp3	92	74.057	ENSPLAG00000017488	zgc:110045	93	74.057	Poecilia_latipinna
ENSMUSG00000001120	Pcbp3	92	77.830	ENSPMEG00000012762	zgc:110045	93	77.830	Poecilia_mexicana
ENSMUSG00000001120	Pcbp3	99	73.362	ENSPREG00000001797	zgc:110045	94	77.358	Poecilia_reticulata
ENSMUSG00000001120	Pcbp3	93	94.030	ENSPPYG00000011525	-	94	97.656	Pongo_abelii
ENSMUSG00000001120	Pcbp3	99	69.512	ENSPCAG00000001454	PCBP3	100	76.218	Procavia_capensis
ENSMUSG00000001120	Pcbp3	99	99.379	ENSPCOG00000013797	PCBP3	100	97.035	Propithecus_coquereli
ENSMUSG00000001120	Pcbp3	92	89.565	ENSPVAG00000000832	PCBP3	83	89.565	Pteropus_vampyrus
ENSMUSG00000001120	Pcbp3	92	74.299	ENSPNYG00000004637	zgc:110045	97	74.299	Pundamilia_nyererei
ENSMUSG00000001120	Pcbp3	92	78.774	ENSPNAG00000004501	zgc:110045	95	78.774	Pygocentrus_nattereri
ENSMUSG00000001120	Pcbp3	99	98.758	ENSRROG00000034567	PCBP3	100	97.035	Rhinopithecus_roxellana
ENSMUSG00000001120	Pcbp3	99	99.379	ENSSBOG00000005789	PCBP3	100	97.035	Saimiri_boliviensis_boliviensis
ENSMUSG00000001120	Pcbp3	99	73.362	ENSSMAG00000013541	zgc:110045	92	76.712	Scophthalmus_maximus
ENSMUSG00000001120	Pcbp3	93	70.323	ENSSDUG00000019371	zgc:110045	66	69.636	Seriola_dumerili
ENSMUSG00000001120	Pcbp3	99	73.362	ENSSLDG00000021064	zgc:110045	72	72.590	Seriola_lalandi_dorsalis
ENSMUSG00000001120	Pcbp3	53	100.000	ENSSARG00000007629	-	100	74.752	Sorex_araneus
ENSMUSG00000001120	Pcbp3	99	73.362	ENSSPAG00000000563	zgc:110045	99	72.222	Stegastes_partitus
ENSMUSG00000001120	Pcbp3	99	98.758	ENSSSCG00000023041	PCBP3	100	91.914	Sus_scrofa
ENSMUSG00000001120	Pcbp3	82	83.333	ENSTRUG00000017789	zgc:110045	92	83.333	Takifugu_rubripes
ENSMUSG00000001120	Pcbp3	75	81.503	ENSTNIG00000003546	zgc:110045	85	81.503	Tetraodon_nigroviridis
ENSMUSG00000001120	Pcbp3	99	71.300	ENSTBEG00000011882	-	73	77.253	Tupaia_belangeri
ENSMUSG00000001120	Pcbp3	99	99.379	ENSUAMG00000006491	PCBP3	100	94.609	Ursus_americanus
ENSMUSG00000001120	Pcbp3	100	85.333	ENSUMAG00000025403	PCBP3	100	85.333	Ursus_maritimus
ENSMUSG00000001120	Pcbp3	99	90.217	ENSVVUG00000023862	PCBP3	100	86.286	Vulpes_vulpes
ENSMUSG00000001120	Pcbp3	72	80.247	ENSXCOG00000005968	zgc:110045	82	80.247	Xiphophorus_couchianus
ENSMUSG00000001120	Pcbp3	99	73.362	ENSXMAG00000008030	zgc:110045	71	72.783	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	22521865.	IDA	Process
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	22521865.	IDA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	22521865.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:1990829	C-rich single-stranded DNA binding	22521865.	IDA	Function