EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127300	-	549	-	-	- (aa)	-	-
ENSMUST00000001204	-	3987	-	ENSMUSP00000001204	197 (aa)	-	Q3UKW2
ENSMUST00000153524	-	582	-	-	- (aa)	-	-
ENSMUST00000110082	-	4115	-	ENSMUSP00000105709	149 (aa)	-	P0DP26

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04014	Ras signaling pathway	KEGG
mmu04015	Rap1 signaling pathway	KEGG
mmu04020	Calcium signaling pathway	KEGG
mmu04022	cGMP-PKG signaling pathway	KEGG
mmu04024	cAMP signaling pathway	KEGG
mmu04070	Phosphatidylinositol signaling system	KEGG
mmu04114	Oocyte meiosis	KEGG
mmu04218	Cellular senescence	KEGG
mmu04261	Adrenergic signaling in cardiomyocytes	KEGG
mmu04270	Vascular smooth muscle contraction	KEGG
mmu04371	Apelin signaling pathway	KEGG
mmu04625	C-type lectin receptor signaling pathway	KEGG
mmu04713	Circadian entrainment	KEGG
mmu04720	Long-term potentiation	KEGG
mmu04722	Neurotrophin signaling pathway	KEGG
mmu04728	Dopaminergic synapse	KEGG
mmu04740	Olfactory transduction	KEGG
mmu04744	Phototransduction	KEGG
mmu04750	Inflammatory mediator regulation of TRP channels	KEGG
mmu04910	Insulin signaling pathway	KEGG
mmu04912	GnRH signaling pathway	KEGG
mmu04915	Estrogen signaling pathway	KEGG
mmu04916	Melanogenesis	KEGG
mmu04921	Oxytocin signaling pathway	KEGG
mmu04922	Glucagon signaling pathway	KEGG
mmu04924	Renin secretion	KEGG
mmu04925	Aldosterone synthesis and secretion	KEGG
mmu04970	Salivary secretion	KEGG
mmu04971	Gastric acid secretion	KEGG
mmu05010	Alzheimer disease	KEGG
mmu05031	Amphetamine addiction	KEGG
mmu05034	Alcoholism	KEGG
mmu05133	Pertussis	KEGG
mmu05152	Tuberculosis	KEGG
mmu05163	Human cytomegalovirus infection	KEGG
mmu05167	Kaposi sarcoma-associated herpesvirus infection	KEGG
mmu05170	Human immunodeficiency virus 1 infection	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05214	Glioma	KEGG
mmu05418	Fluid shear stress and atherosclerosis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001175	Calm1	100	100.000	ENSDARG00000021811	calm3a	100	100.000	Danio_rerio
ENSMUSG00000001175	Calm1	100	100.000	ENSG00000160014	CALM3	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000086	G2/M transition of mitotic cell cycle	2469574.	IDA	Process
GO:0005509	calcium ion binding	-	ISO	Function
GO:0005509	calcium ion binding	2469574.	TAS	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0008076	voltage-gated potassium channel complex	12223552.	IGI	Component
GO:0008179	adenylate cyclase binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030235	nitric-oxide synthase regulator activity	-	ISO	Function
GO:0030426	growth cone	-	ISO	Component
GO:0030672	synaptic vesicle membrane	-	ISO	Component
GO:0031800	type 3 metabotropic glutamate receptor binding	-	ISO	Function
GO:0031966	mitochondrial membrane	-	ISO	Component
GO:0043005	neuron projection	-	ISO	Component
GO:0043209	myelin sheath	-	ISO	Component
GO:0043388	positive regulation of DNA binding	10049721.	IDA	Process
GO:0043548	phosphatidylinositol 3-kinase binding	-	ISO	Function
GO:0044325	ion channel binding	-	ISO	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0048306	calcium-dependent protein binding	-	ISO	Function
GO:0050998	nitric-oxide synthase binding	-	ISO	Function