EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001228 (Gene tree)
Gene ID: 18140
Gene Symbol: Uhrf1
Alias: ICBP90|Np95
Full Name: ubiquitin-like%2C containing PHD and RING finger domains%2C 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 20166
Position: chr17: 56303321-56323486
Accession: 1338889
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137876	-	441	-	-	- (aa)	-	-
ENSMUST00000113039	-	3391	-	ENSMUSP00000108662	782 (aa)	-	Q8VDF2
ENSMUST00000113038	-	3483	XM_006523800	ENSMUSP00000108661	774 (aa)	XP_006523863	Q8VDF2
ENSMUST00000113035	-	3402	-	ENSMUSP00000108658	774 (aa)	-	Q8VDF2
ENSMUST00000001258	-	3586	XM_006523799	ENSMUSP00000001258	782 (aa)	XP_006523862	Q8VDF2
ENSMUST00000142387	-	529	-	ENSMUSP00000125830	146 (aa)	-	E9Q5Y5
ENSMUST00000139654	-	949	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000001228's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001228's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001228	Uhrf1	100	78.667	ENSG00000276043	UHRF1	100	74.559	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21489993.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000790	nuclear chromatin	14993289.17994007.	IDA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000791	euchromatin	-	ISO	Component
GO:0000792	heterochromatin	17994007.21489993.	IDA	Component
GO:0000792	heterochromatin	-	ISO	Component
GO:0000987	proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005515	protein binding	17994007.18692478.21268065.28604677.	IPI	Function
GO:0005634	nucleus	17994007.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	9880673.	TAS	Component
GO:0005657	replication fork	17994007.	IDA	Component
GO:0005657	replication fork	-	ISO	Component
GO:0005720	nuclear heterochromatin	21873635.	IBA	Component
GO:0005720	nuclear heterochromatin	18692478.	IDA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008270	zinc ion binding	-	ISO	Function
GO:0008327	methyl-CpG binding	-	ISO	Function
GO:0010216	maintenance of DNA methylation	21873635.	IBA	Process
GO:0010216	maintenance of DNA methylation	17673620.17994007.	IMP	Process
GO:0010216	maintenance of DNA methylation	-	ISO	Process
GO:0010390	histone monoubiquitination	21873635.	IBA	Process
GO:0010390	histone monoubiquitination	14993289.	IDA	Process
GO:0016363	nuclear matrix	14993289.	IDA	Component
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0016574	histone ubiquitination	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0031410	cytoplasmic vesicle	-	ISO	Component
GO:0031493	nucleosomal histone binding	14993289.	IDA	Function
GO:0032270	positive regulation of cellular protein metabolic process	-	ISO	Process
GO:0035064	methylated histone binding	21489993.	IDA	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0042393	histone binding	-	ISO	Function
GO:0042802	identical protein binding	14993289.	IPI	Function
GO:0044729	hemi-methylated DNA-binding	17994007.	IDA	Function
GO:0044729	hemi-methylated DNA-binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0050678	regulation of epithelial cell proliferation	-	ISO	Process
GO:0051865	protein autoubiquitination	14993289.	IDA	Process
GO:0051865	protein autoubiquitination	-	ISO	Process
GO:0061630	ubiquitin protein ligase activity	21873635.	IBA	Function
GO:0061630	ubiquitin protein ligase activity	14993289.	IDA	Function