EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001288 (Gene tree)
Gene ID: 19411
Gene Symbol: Rarg
Alias: RAR gamma 2|RARgamma2
Full Name: retinoic acid receptor%2C gamma
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 22580
Position: chr15: 102234938-102257517
Accession: 97858
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000230330	-	374	-	-	- (aa)	-	-
ENSMUST00000135466	-	934	-	ENSMUSP00000118615	227 (aa)	-	D3YZY4
ENSMUST00000043172	-	2953	XM_006520650	ENSMUSP00000048838	458 (aa)	XP_006520713	P18911
ENSMUST00000130204	-	423	-	ENSMUSP00000155670	4 (aa)	-	UPI000D191EF6
ENSMUST00000124224	-	311	-	-	- (aa)	-	-
ENSMUST00000063339	-	2718	-	ENSMUSP00000067266	447 (aa)	-	P18911
ENSMUST00000155563	-	111	-	ENSMUSP00000155448	3 (aa)	-	UPI00000616CF

Gene Model

Click here to download ENSMUSG00000001288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001288's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	8152920.	IDA	Process
GO:0000790	nuclear chromatin	15327771.	IDA	Component
GO:0000976	transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	1655807.	IDA	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001843	neural tube closure	7607067.	IGI	Process
GO:0002063	chondrocyte development	19389355.	IMP	Process
GO:0002068	glandular epithelial cell development	7607067.	IGI	Process
GO:0003406	retinal pigment epithelium development	8681798.	IGI	Process
GO:0003417	growth plate cartilage development	19389355.	IGI	Process
GO:0003430	growth plate cartilage chondrocyte growth	19389355.	IMP	Process
GO:0003677	DNA binding	18439490.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	18439490.	IDA	Function
GO:0003707	steroid hormone receptor activity	-	IEA	Function
GO:0004879	nuclear receptor activity	-	ISO	Function
GO:0005515	protein binding	15327771.19389355.20133701.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	1655807.15327771.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	18439490.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0007275	multicellular organism development	21873635.	IBA	Process
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008284	positive regulation of cell proliferation	8681798.	IGI	Process
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0008285	negative regulation of cell proliferation	10075839.	IGI	Process
GO:0009755	hormone-mediated signaling pathway	21873635.	IBA	Process
GO:0009952	anterior/posterior pattern specification	11784046.	IGI	Process
GO:0009952	anterior/posterior pattern specification	8388780.11784046.	IMP	Process
GO:0010468	regulation of gene expression	19389355.	IGI	Process
GO:0010628	positive regulation of gene expression	19389355.	IDA	Process
GO:0030154	cell differentiation	21873635.	IBA	Process
GO:0030374	nuclear receptor transcription coactivator activity	21873635.	IBA	Function
GO:0031076	embryonic camera-type eye development	7607067.	IGI	Process
GO:0031641	regulation of myelination	-	ISO	Process
GO:0032331	negative regulation of chondrocyte differentiation	10684250.	IMP	Process
GO:0032526	response to retinoic acid	21873635.	IBA	Process
GO:0032526	response to retinoic acid	-	ISO	Process
GO:0033993	response to lipid	21873635.	IBA	Process
GO:0035116	embryonic hindlimb morphogenesis	10075839.	IGI	Process
GO:0035264	multicellular organism growth	19389355.	IGI	Process
GO:0038023	signaling receptor activity	21873635.	IBA	Function
GO:0043010	camera-type eye development	9376317.	IGI	Process
GO:0043065	positive regulation of apoptotic process	16207763.	IGI	Process
GO:0043066	negative regulation of apoptotic process	8681798.	IGI	Process
GO:0043068	positive regulation of programmed cell death	10075839.	IGI	Process
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:0045596	negative regulation of cell differentiation	10684250.	IMP	Process
GO:0045637	regulation of myeloid cell differentiation	23136256.	IGI	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	18439490.	IC	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	2157970.15327771.15734736.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	15766748.	IGI	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0046965	retinoid X receptor binding	18439490.	IMP	Function
GO:0048048	embryonic eye morphogenesis	16207763.	IGI	Process
GO:0048384	retinoic acid receptor signaling pathway	21873635.	IBA	Process
GO:0048384	retinoic acid receptor signaling pathway	8388780.	IMP	Process
GO:0048384	retinoic acid receptor signaling pathway	-	ISO	Process
GO:0048608	reproductive structure development	8388780.	IMP	Process
GO:0048732	gland development	21873635.	IBA	Process
GO:0048732	gland development	8388780.	IMP	Process
GO:0060041	retina development in camera-type eye	8681798.	IGI	Process
GO:0060173	limb development	7607067.	IGI	Process
GO:0060173	limb development	19389355.	IMP	Process
GO:0060324	face development	7607067.	IGI	Process
GO:0060348	bone development	7607067.9376317.	IGI	Process
GO:0060348	bone development	19389355.	IMP	Process
GO:0060349	bone morphogenesis	21873635.	IBA	Process
GO:0060349	bone morphogenesis	11784046.	IGI	Process
GO:0060349	bone morphogenesis	8388780.11784046.	IMP	Process
GO:0060429	epithelium development	21873635.	IBA	Process
GO:0060429	epithelium development	8388780.	IMP	Process
GO:0060534	trachea cartilage development	8388780.9376317.	IMP	Process
GO:0060740	prostate gland epithelium morphogenesis	8388780.	IMP	Process
GO:0061037	negative regulation of cartilage development	10684250.	IMP	Process
GO:0070384	Harderian gland development	8388780.	IMP	Process
GO:0071300	cellular response to retinoic acid	21873635.	IBA	Process
GO:0071300	cellular response to retinoic acid	2157970.	IDA	Process
GO:0090575	RNA polymerase II transcription factor complex	21873635.	IBA	Component
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process