EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000001415 (Gene tree)
Gene ID
229512
Gene Symbol
Smg5
Alias
-
Full Name
Smg-5 homolog%2C nonsense mediated mRNA decay factor (C. elegans)
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
26079 bases
Position
chr3:88336260-88362338
Accession
2447364
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000001451EST1PF10374.91.9e-2311
ENSMUSP00000001451EST1_DNA_bindPF10373.94.9e-3912
ENSMUSP00000001451EST1_DNA_bindPF10373.94.9e-3922
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000001451-4448XM_006501343ENSMUSP000000014511017 (aa)XP_006501406Q6ZPY2
ENSMUST00000194942-751--- (aa)--
ENSMUST00000192009-1010-ENSMUSP00000141650180 (aa)-A0A0A6YWQ7
ENSMUST00000193007-778--- (aa)--
ENSMUST00000193097-830--- (aa)--
ENSMUST00000192377-769--- (aa)--
ENSMUST00000192057-3119--- (aa)--
ENSMUST00000193224-833--- (aa)--
ENSMUST00000194359-424--- (aa)--
Gene Model
Click here to download ENSMUSG00000001415's gene model file
Pathways
Pathway IDPathway NameSource
mmu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001415's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000001415Smg59998.883ENSG00000198952SMG510092.731Homo_sapiens
ENSMUSG00000001415Smg59988.268ENSAPOG00000019690smg59967.028Acanthochromis_polyacanthus
ENSMUSG00000001415Smg59997.765ENSAMEG00000014458SMG510088.945Ailuropoda_melanoleuca
ENSMUSG00000001415Smg59988.268ENSACIG00000001353smg59965.865Amphilophus_citrinellus
ENSMUSG00000001415Smg59988.268ENSAOCG00000019483smg59960.893Amphiprion_ocellaris
ENSMUSG00000001415Smg59988.268ENSAPEG00000022949smg59866.135Amphiprion_percula
ENSMUSG00000001415Smg59988.827ENSATEG00000005348smg59966.440Anabas_testudineus
ENSMUSG00000001415Smg59996.648ENSAPLG00000010263SMG510077.605Anas_platyrhynchos
ENSMUSG00000001415Smg59998.883ENSANAG00000032899SMG510092.436Aotus_nancymaae
ENSMUSG00000001415Smg59988.268ENSACLG00000009311smg59966.602Astatotilapia_calliptera
ENSMUSG00000001415Smg59988.268ENSAMXG00000024616smg59962.976Astyanax_mexicanus
ENSMUSG00000001415Smg59958.011ENSBTAG00000021747-9943.230Bos_taurus
ENSMUSG00000001415Smg59998.883ENSBTAG00000009435SMG510091.749Bos_taurus
ENSMUSG00000001415Smg59998.883ENSCJAG00000005684SMG510092.338Callithrix_jacchus
ENSMUSG00000001415Smg59998.324ENSCAFG00000016839SMG510091.052Canis_familiaris
ENSMUSG00000001415Smg59998.324ENSCAFG00020006061SMG510091.052Canis_lupus_dingo
ENSMUSG00000001415Smg59957.459ENSCHIG00000006323-9943.585Capra_hircus
ENSMUSG00000001415Smg59998.883ENSCHIG00000007709SMG510091.650Capra_hircus
ENSMUSG00000001415Smg59998.883ENSTSYG00000004099SMG510091.855Carlito_syrichta
ENSMUSG00000001415Smg59771.501ENSCAPG00000003631SMG510072.586Cavia_aperea
ENSMUSG00000001415Smg59997.765ENSCPOG00000015696SMG510092.043Cavia_porcellus
ENSMUSG00000001415Smg59998.883ENSCCAG00000027409SMG510092.043Cebus_capucinus
ENSMUSG00000001415Smg59998.883ENSCATG00000030539SMG510092.927Cercocebus_atys
ENSMUSG00000001415Smg59998.324ENSCLAG00000003983SMG510092.633Chinchilla_lanigera
ENSMUSG00000001415Smg59998.883ENSCSAG00000002120SMG510092.829Chlorocebus_sabaeus
ENSMUSG00000001415Smg59980.447ENSCHOG00000008741-5789.781Choloepus_hoffmanni
ENSMUSG00000001415Smg59596.491ENSCPBG00000025848SMG510077.360Chrysemys_picta_bellii
ENSMUSG00000001415Smg59943.646ENSCING00000008706-9934.939Ciona_intestinalis
ENSMUSG00000001415Smg59998.883ENSCANG00000029208SMG510088.507Colobus_angolensis_palliatus
ENSMUSG00000001415Smg59998.883ENSCGRG00001006336Smg510097.738Cricetulus_griseus_chok1gshd
ENSMUSG00000001415Smg59957.778ENSCGRG00001000584-7454.950Cricetulus_griseus_chok1gshd
ENSMUSG00000001415Smg59998.883ENSCGRG00000005111Smg510097.782Cricetulus_griseus_crigri
ENSMUSG00000001415Smg59957.778ENSCGRG00000009566-8854.703Cricetulus_griseus_crigri
ENSMUSG00000001415Smg59988.268ENSCSEG00000014220smg59965.815Cynoglossus_semilaevis
ENSMUSG00000001415Smg59966.667ENSCVAG00000000529smg59961.230Cyprinodon_variegatus
ENSMUSG00000001415Smg59988.268ENSDARG00000041481smg59963.793Danio_rerio
ENSMUSG00000001415Smg59998.883ENSDNOG00000000051SMG510088.212Dasypus_novemcinctus
ENSMUSG00000001415Smg59844.382ENSDNOG00000039862-10035.525Dasypus_novemcinctus
ENSMUSG00000001415Smg59998.883ENSDORG00000010382Smg510091.061Dipodomys_ordii
ENSMUSG00000001415Smg57533.962FBgn0019890Smg56233.962Drosophila_melanogaster
ENSMUSG00000001415Smg59998.883ENSETEG00000010336SMG59193.204Echinops_telfairi
ENSMUSG00000001415Smg59964.804ENSEBUG00000003739smg59848.144Eptatretus_burgeri
ENSMUSG00000001415Smg59998.883ENSEASG00005019122SMG510091.847Equus_asinus_asinus
ENSMUSG00000001415Smg59998.883ENSECAG00000001389SMG510091.847Equus_caballus
ENSMUSG00000001415Smg59998.883ENSEEUG00000012690SMG57496.254Erinaceus_europaeus
ENSMUSG00000001415Smg59987.709ENSELUG00000012585smg59965.024Esox_lucius
ENSMUSG00000001415Smg59998.324ENSFCAG00000011783SMG510090.766Felis_catus
ENSMUSG00000001415Smg59995.580ENSFALG00000001166-9980.301Ficedula_albicollis
ENSMUSG00000001415Smg59998.324ENSFDAG00000017388SMG510090.232Fukomys_damarensis
ENSMUSG00000001415Smg59988.268ENSFHEG00000013939smg510061.756Fundulus_heteroclitus
ENSMUSG00000001415Smg59988.827ENSGMOG00000007310smg59961.180Gadus_morhua
ENSMUSG00000001415Smg59996.648ENSGALG00000029918-10076.901Gallus_gallus
ENSMUSG00000001415Smg59988.268ENSGAFG00000021691smg59668.690Gambusia_affinis
ENSMUSG00000001415Smg59988.268ENSGACG00000013142smg59962.274Gasterosteus_aculeatus
ENSMUSG00000001415Smg59996.648ENSGAGG00000016131SMG510078.612Gopherus_agassizii
ENSMUSG00000001415Smg59998.883ENSGGOG00000010932SMG510092.436Gorilla_gorilla
ENSMUSG00000001415Smg59988.268ENSHBUG00000008654smg59965.649Haplochromis_burtoni
ENSMUSG00000001415Smg59998.324ENSHGLG00000019152SMG510089.980Heterocephalus_glaber_female
ENSMUSG00000001415Smg59997.765ENSHGLG00100015948SMG59989.803Heterocephalus_glaber_male
ENSMUSG00000001415Smg59979.888ENSHCOG00000010229smg59271.981Hippocampus_comes
ENSMUSG00000001415Smg59988.827ENSIPUG00000006624Smg59962.138Ictalurus_punctatus
ENSMUSG00000001415Smg59998.883ENSSTOG00000001780SMG510093.026Ictidomys_tridecemlineatus
ENSMUSG00000001415Smg59998.883ENSJJAG00000022763Smg510092.549Jaculus_jaculus
ENSMUSG00000001415Smg59988.827ENSKMAG00000014586smg59961.052Kryptolebias_marmoratus
ENSMUSG00000001415Smg59988.268ENSLBEG00000002145smg59966.249Labrus_bergylta
ENSMUSG00000001415Smg59988.827ENSLACG00000010521SMG510064.129Latimeria_chalumnae
ENSMUSG00000001415Smg59988.268ENSLOCG00000008380smg59960.823Lepisosteus_oculatus
ENSMUSG00000001415Smg59998.883ENSLAFG00000006241SMG510089.980Loxodonta_africana
ENSMUSG00000001415Smg59998.883ENSMFAG00000045357SMG510092.829Macaca_fascicularis
ENSMUSG00000001415Smg59998.883ENSMMUG00000000090SMG510092.829Macaca_mulatta
ENSMUSG00000001415Smg59998.883ENSMNEG00000044425SMG510092.731Macaca_nemestrina
ENSMUSG00000001415Smg510086.399ENSMLEG00000041192SMG510086.595Mandrillus_leucophaeus
ENSMUSG00000001415Smg59989.385ENSMAMG00000010683smg510060.491Mastacembelus_armatus
ENSMUSG00000001415Smg59988.268ENSMZEG00005015815smg59965.163Maylandia_zebra
ENSMUSG00000001415Smg56358.699ENSMZEG00005016543smg510059.789Maylandia_zebra
ENSMUSG00000001415Smg57363.571ENSMGAG00000017349-10060.526Meleagris_gallopavo
ENSMUSG00000001415Smg59997.765ENSMAUG00000010381Smg510096.559Mesocricetus_auratus
ENSMUSG00000001415Smg59758.523ENSMAUG00000000043-9643.674Mesocricetus_auratus
ENSMUSG00000001415Smg59998.883ENSMICG00000002257SMG510093.026Microcebus_murinus
ENSMUSG00000001415Smg59958.333ENSMOCG00000008423-7154.074Microtus_ochrogaster
ENSMUSG00000001415Smg59998.883ENSMOCG00000016590Smg510096.173Microtus_ochrogaster
ENSMUSG00000001415Smg59980.447ENSMMOG00000017199smg59960.323Mola_mola
ENSMUSG00000001415Smg59737.500ENSMODG00000021488-9935.556Monodelphis_domestica
ENSMUSG00000001415Smg59737.500ENSMODG00000010675-8537.760Monodelphis_domestica
ENSMUSG00000001415Smg59738.857ENSMODG00000004511-9934.277Monodelphis_domestica
ENSMUSG00000001415Smg59736.000ENSMODG00000004735-8640.107Monodelphis_domestica
ENSMUSG00000001415Smg59998.324ENSMODG00000016901SMG59887.289Monodelphis_domestica
ENSMUSG00000001415Smg59739.429ENSMODG00000004532-9237.561Monodelphis_domestica
ENSMUSG00000001415Smg59983.799ENSMALG00000010375smg59960.320Monopterus_albus
ENSMUSG00000001415Smg510099.410MGP_CAROLIEiJ_G0025163Smg5100100.000Mus_caroli
ENSMUSG00000001415Smg510098.528MGP_PahariEiJ_G0026606Smg510098.883Mus_pahari
ENSMUSG00000001415Smg510099.607MGP_SPRETEiJ_G0026104Smg5100100.000Mus_spretus
ENSMUSG00000001415Smg59596.491ENSMPUG00000004546SMG510088.854Mustela_putorius_furo
ENSMUSG00000001415Smg59998.883ENSMLUG00000008518SMG510091.773Myotis_lucifugus
ENSMUSG00000001415Smg59998.883ENSNGAG00000020706Smg510093.124Nannospalax_galili
ENSMUSG00000001415Smg59957.222ENSNGAG00000012101-9843.676Nannospalax_galili
ENSMUSG00000001415Smg59988.268ENSNBRG00000004332smg59863.710Neolamprologus_brichardi
ENSMUSG00000001415Smg59998.324ENSNLEG00000012439SMG510092.141Nomascus_leucogenys
ENSMUSG00000001415Smg59998.324ENSMEUG00000012834SMG510085.462Notamacropus_eugenii
ENSMUSG00000001415Smg59998.883ENSOPRG00000009152SMG510090.570Ochotona_princeps
ENSMUSG00000001415Smg59998.883ENSODEG00000012237SMG510091.650Octodon_degus
ENSMUSG00000001415Smg59988.268ENSONIG00000008632smg59961.765Oreochromis_niloticus
ENSMUSG00000001415Smg59998.883ENSOCUG00000012886SMG510092.052Oryctolagus_cuniculus
ENSMUSG00000001415Smg59853.371ENSOCUG00000023338-9940.022Oryctolagus_cuniculus
ENSMUSG00000001415Smg59988.268ENSORLG00000016239smg59961.643Oryzias_latipes
ENSMUSG00000001415Smg59988.268ENSORLG00020013127smg59965.558Oryzias_latipes_hni
ENSMUSG00000001415Smg59988.268ENSORLG00015019014smg59965.561Oryzias_latipes_hsok
ENSMUSG00000001415Smg59988.268ENSOMEG00000021330smg59260.108Oryzias_melastigma
ENSMUSG00000001415Smg59998.324ENSOGAG00000004966SMG510091.356Otolemur_garnettii
ENSMUSG00000001415Smg59957.692ENSOARG00000011963-9943.512Ovis_aries
ENSMUSG00000001415Smg59998.883ENSOARG00000005778SMG510091.749Ovis_aries
ENSMUSG00000001415Smg59998.883ENSPPAG00000011996SMG510092.436Pan_paniscus
ENSMUSG00000001415Smg59998.324ENSPPRG00000011901SMG510090.534Panthera_pardus
ENSMUSG00000001415Smg59993.296ENSPTIG00000007892SMG59883.603Panthera_tigris_altaica
ENSMUSG00000001415Smg59998.883ENSPTRG00000049282-10092.633Pan_troglodytes
ENSMUSG00000001415Smg59998.883ENSPTRG00000023925SMG510092.633Pan_troglodytes
ENSMUSG00000001415Smg59998.883ENSPANG00000011201SMG510092.927Papio_anubis
ENSMUSG00000001415Smg59988.827ENSPKIG00000009402smg59967.023Paramormyrops_kingsleyae
ENSMUSG00000001415Smg59996.648ENSPSIG00000015198SMG510079.125Pelodiscus_sinensis
ENSMUSG00000001415Smg59983.799ENSPMGG00000010465smg59960.497Periophthalmus_magnuspinnatus
ENSMUSG00000001415Smg59957.222ENSPEMG00000010022-9544.580Peromyscus_maniculatus_bairdii
ENSMUSG00000001415Smg59998.883ENSPEMG00000001819Smg510097.443Peromyscus_maniculatus_bairdii
ENSMUSG00000001415Smg59971.508ENSPMAG00000000410smg510051.141Petromyzon_marinus
ENSMUSG00000001415Smg59998.324ENSPCIG00000018938SMG510086.752Phascolarctos_cinereus
ENSMUSG00000001415Smg59988.268ENSPFOG00000010191smg59962.177Poecilia_formosa
ENSMUSG00000001415Smg59988.268ENSPLAG00000009332smg59962.410Poecilia_latipinna
ENSMUSG00000001415Smg59988.268ENSPMEG00000014105smg59965.992Poecilia_mexicana
ENSMUSG00000001415Smg59988.268ENSPREG00000017713smg59963.040Poecilia_reticulata
ENSMUSG00000001415Smg59998.883ENSPPYG00000000723SMG510092.633Pongo_abelii
ENSMUSG00000001415Smg59998.324ENSPCAG00000008412SMG58196.133Procavia_capensis
ENSMUSG00000001415Smg59998.883ENSPCOG00000004741SMG510092.731Propithecus_coquereli
ENSMUSG00000001415Smg510082.399ENSPVAG00000016748SMG510082.809Pteropus_vampyrus
ENSMUSG00000001415Smg59987.709ENSPNYG00000013397smg59960.958Pundamilia_nyererei
ENSMUSG00000001415Smg59988.268ENSPNAG00000028363smg59962.636Pygocentrus_nattereri
ENSMUSG00000001415Smg510098.427ENSRNOG00000019590Smg510098.427Rattus_norvegicus
ENSMUSG00000001415Smg59998.883ENSRBIG00000027428SMG510092.633Rhinopithecus_bieti
ENSMUSG00000001415Smg59998.883ENSRROG00000030035SMG510092.534Rhinopithecus_roxellana
ENSMUSG00000001415Smg59998.883ENSSBOG00000033339SMG510092.240Saimiri_boliviensis_boliviensis
ENSMUSG00000001415Smg59998.324ENSSHAG00000014163SMG510085.900Sarcophilus_harrisii
ENSMUSG00000001415Smg59844.068ENSSHAG00000009572-8041.278Sarcophilus_harrisii
ENSMUSG00000001415Smg59842.373ENSSHAG00000000561-8739.895Sarcophilus_harrisii
ENSMUSG00000001415Smg59841.243ENSSHAG00000000935-9240.244Sarcophilus_harrisii
ENSMUSG00000001415Smg59987.151ENSSFOG00015024175smg59965.764Scleropages_formosus
ENSMUSG00000001415Smg59988.268ENSSMAG00000013059smg59961.210Scophthalmus_maximus
ENSMUSG00000001415Smg59988.268ENSSDUG00000007122smg59961.668Seriola_dumerili
ENSMUSG00000001415Smg59988.268ENSSLDG00000011418smg59961.977Seriola_lalandi_dorsalis
ENSMUSG00000001415Smg59077.802ENSSARG00000012484SMG510077.258Sorex_araneus
ENSMUSG00000001415Smg59595.906ENSSPUG00000002260SMG510075.852Sphenodon_punctatus
ENSMUSG00000001415Smg59988.827ENSSPAG00000014266smg59865.373Stegastes_partitus
ENSMUSG00000001415Smg59978.090ENSSSCG00000039308-10071.949Sus_scrofa
ENSMUSG00000001415Smg58841.250ENSSSCG00000037182-8536.122Sus_scrofa
ENSMUSG00000001415Smg59998.883ENSSSCG00000006490-10093.026Sus_scrofa
ENSMUSG00000001415Smg59995.028ENSTGUG00000003748-10079.727Taeniopygia_guttata
ENSMUSG00000001415Smg59988.268ENSTRUG00000012580smg59964.666Takifugu_rubripes
ENSMUSG00000001415Smg59987.709ENSTNIG00000010303smg59965.179Tetraodon_nigroviridis
ENSMUSG00000001415Smg57798.551ENSTBEG00000002777SMG56098.522Tupaia_belangeri
ENSMUSG00000001415Smg59998.324ENSTTRG00000001401SMG510087.132Tursiops_truncatus
ENSMUSG00000001415Smg59997.765ENSUAMG00000013721SMG510089.971Ursus_americanus
ENSMUSG00000001415Smg59992.179ENSUMAG00000018041SMG59785.542Ursus_maritimus
ENSMUSG00000001415Smg59882.276ENSVPAG00000009446SMG59982.477Vicugna_pacos
ENSMUSG00000001415Smg59998.324ENSVVUG00000005887SMG510090.954Vulpes_vulpes
ENSMUSG00000001415Smg57764.528ENSXETG00000033791SMG59964.151Xenopus_tropicalis
ENSMUSG00000001415Smg59988.268ENSXCOG00000004379smg59670.330Xiphophorus_couchianus
ENSMUSG00000001415Smg59988.268ENSXMAG00000013499smg59966.375Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-IEAProcess
GO:0005634nucleus-ISOComponent
GO:0005697telomerase holoenzyme complex21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-ISOComponent
GO:0007004telomere maintenance via telomerase21873635.IBAProcess
GO:0031625ubiquitin protein ligase binding-ISOFunction
GO:0032204regulation of telomere maintenance-ISOProcess
GO:0032210regulation of telomere maintenance via telomerase21873635.IBAProcess
GO:0035303regulation of dephosphorylation-ISOProcess
GO:0042162telomeric DNA binding21873635.IBAFunction
GO:0042162telomeric DNA binding-ISOFunction
GO:0042826histone deacetylase binding-ISOFunction
GO:0051721protein phosphatase 2A binding-ISOFunction
GO:0070034telomerase RNA binding21873635.IBAFunction
GO:0070034telomerase RNA binding-ISOFunction

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us