EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000001452	-	1977	-	ENSMUSP00000001452	545 (aa)	-	P80318
ENSMUST00000168971	-	474	-	ENSMUSP00000131250	85 (aa)	-	F6ZVG8
ENSMUST00000164783	-	1932	-	-	- (aa)	-	-
ENSMUST00000163735	-	919	-	ENSMUSP00000130616	306 (aa)	-	F6Q609
ENSMUST00000167000	-	3335	-	-	- (aa)	-	-
ENSMUST00000193666	-	1831	-	-	- (aa)	-	-
ENSMUST00000164166	-	1804	-	ENSMUSP00000126109	507 (aa)	-	E9Q133
ENSMUST00000168062	-	1943	-	ENSMUSP00000131113	521 (aa)	-	Q3U0I3
ENSMUST00000164122	-	472	-	-	- (aa)	-	-
ENSMUST00000167718	-	2056	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001416	Cct3	99	68.556	FBgn0015019	CCT3	99	68.556	Drosophila_melanogaster
ENSMUSG00000001416	Cct3	100	97.248	ENSG00000163468	CCT3	100	97.248	Homo_sapiens
ENSMUSG00000001416	Cct3	97	59.454	YJL014W	CCT3	99	59.699	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002199	zona pellucida receptor complex	21880732.	IDA	Component
GO:0005515	protein binding	23055941.23872636.25416944.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005832	chaperonin-containing T-complex	21873635.	IBA	Component
GO:0005832	chaperonin-containing T-complex	7798195.7828721.7953530.	IDA	Component
GO:0005832	chaperonin-containing T-complex	-	ISO	Component
GO:0005874	microtubule	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006457	protein folding	-	IEA	Process
GO:0007339	binding of sperm to zona pellucida	21880732.	IDA	Process
GO:0032212	positive regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0044297	cell body	21880732.	IDA	Component
GO:0046931	pore complex assembly	23716698.	IMP	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0051082	unfolded protein binding	-	IEA	Function
GO:1901998	toxin transport	23716698.	IMP	Process
GO:1904851	positive regulation of establishment of protein localization to telomere	-	ISO	Process