EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001424 (Gene tree)
Gene ID: 56463
Gene Symbol: Snd1
Alias: Tudor-SN|p100 co-activator
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 460024 bases
Position: chr6:28475139-28935162
Accession: 1929266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000001460	TUDOR	PF00567.24	1.3e-27	1	1
ENSMUSP00000001460	SNase	PF00565.17	2.2e-68	1	5
ENSMUSP00000001460	SNase	PF00565.17	2.2e-68	2	5
ENSMUSP00000001460	SNase	PF00565.17	2.2e-68	3	5
ENSMUSP00000001460	SNase	PF00565.17	2.2e-68	4	5
ENSMUSP00000001460	SNase	PF00565.17	2.2e-68	5	5
ENSMUSP00000128737	SNase	PF00565.17	3.1e-48	1	3
ENSMUSP00000128737	SNase	PF00565.17	3.1e-48	2	3
ENSMUSP00000128737	SNase	PF00565.17	3.1e-48	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000166136	-	366	-	-	- (aa)	-	-
ENSMUST00000171195	-	337	-	-	- (aa)	-	-
ENSMUST00000183161	-	2420	-	-	- (aa)	-	-
ENSMUST00000169579	-	392	-	-	- (aa)	-	-
ENSMUST00000169321	-	320	-	-	- (aa)	-	-
ENSMUST00000171532	-	420	-	-	- (aa)	-	-
ENSMUST00000168362	-	351	-	ENSMUSP00000126382	10 (aa)	-	A0A1C7ZN09
ENSMUST00000163772	-	110	-	-	- (aa)	-	-
ENSMUST00000001460	-	3482	-	ENSMUSP00000001460	910 (aa)	-	Q78PY7
ENSMUST00000167201	-	3781	XM_006505142	ENSMUSP00000128737	608 (aa)	XP_006505205	Q3TJ56
ENSMUST00000164915	-	3688	-	ENSMUSP00000127317	262 (aa)	-	E9Q3E9
ENSMUST00000165151	-	718	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000001424's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001424's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001424	Snd1	100	97.363	ENSG00000197157	SND1	100	97.363	Homo_sapiens
ENSMUSG00000001424	Snd1	100	83.333	ENSAPOG00000017599	snd1	98	84.452	Acanthochromis_polyacanthus
ENSMUSG00000001424	Snd1	100	97.149	ENSAMEG00000004664	SND1	94	97.149	Ailuropoda_melanoleuca
ENSMUSG00000001424	Snd1	98	81.635	ENSACIG00000003551	snd1	98	81.635	Amphilophus_citrinellus
ENSMUSG00000001424	Snd1	100	83.224	ENSAOCG00000014166	snd1	98	84.228	Amphiprion_ocellaris
ENSMUSG00000001424	Snd1	100	83.224	ENSAPEG00000007067	snd1	98	84.228	Amphiprion_percula
ENSMUSG00000001424	Snd1	99	83.553	ENSATEG00000018475	snd1	88	83.694	Anabas_testudineus
ENSMUSG00000001424	Snd1	100	97.802	ENSANAG00000034463	SND1	100	97.802	Aotus_nancymaae
ENSMUSG00000001424	Snd1	99	82.747	ENSACLG00000022897	snd1	98	83.929	Astatotilapia_calliptera
ENSMUSG00000001424	Snd1	100	83.260	ENSAMXG00000016318	snd1	98	84.298	Astyanax_mexicanus
ENSMUSG00000001424	Snd1	100	97.582	ENSBTAG00000010692	SND1	100	97.582	Bos_taurus
ENSMUSG00000001424	Snd1	98	51.490	WBGene00006626	tsn-1	98	46.865	Caenorhabditis_elegans
ENSMUSG00000001424	Snd1	100	97.363	ENSCJAG00000017668	SND1	100	97.363	Callithrix_jacchus
ENSMUSG00000001424	Snd1	100	97.473	ENSCAFG00000001700	SND1	100	97.473	Canis_familiaris
ENSMUSG00000001424	Snd1	100	97.473	ENSCAFG00020021639	SND1	100	97.473	Canis_lupus_dingo
ENSMUSG00000001424	Snd1	100	97.692	ENSCHIG00000023390	SND1	100	97.692	Capra_hircus
ENSMUSG00000001424	Snd1	93	97.535	ENSTSYG00000004979	SND1	96	97.711	Carlito_syrichta
ENSMUSG00000001424	Snd1	99	84.556	ENSCAPG00000010677	SND1	98	84.598	Cavia_aperea
ENSMUSG00000001424	Snd1	100	97.363	ENSCPOG00000006251	SND1	100	97.363	Cavia_porcellus
ENSMUSG00000001424	Snd1	100	97.692	ENSCCAG00000036847	SND1	100	97.692	Cebus_capucinus
ENSMUSG00000001424	Snd1	100	97.582	ENSCATG00000035214	SND1	100	97.582	Cercocebus_atys
ENSMUSG00000001424	Snd1	100	97.363	ENSCLAG00000011796	SND1	100	97.363	Chinchilla_lanigera
ENSMUSG00000001424	Snd1	100	97.582	ENSCSAG00000010182	SND1	100	97.582	Chlorocebus_sabaeus
ENSMUSG00000001424	Snd1	78	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
ENSMUSG00000001424	Snd1	100	90.769	ENSCPBG00000018094	SND1	98	91.704	Chrysemys_picta_bellii
ENSMUSG00000001424	Snd1	96	62.181	ENSCING00000000524	-	98	57.301	Ciona_intestinalis
ENSMUSG00000001424	Snd1	98	62.775	ENSCSAVG00000008807	-	98	58.204	Ciona_savignyi
ENSMUSG00000001424	Snd1	100	97.582	ENSCANG00000035119	SND1	100	97.582	Colobus_angolensis_palliatus
ENSMUSG00000001424	Snd1	100	98.132	ENSCGRG00001022514	Snd1	100	98.132	Cricetulus_griseus_chok1gshd
ENSMUSG00000001424	Snd1	97	98.303	ENSCGRG00000012277	Snd1	99	98.303	Cricetulus_griseus_crigri
ENSMUSG00000001424	Snd1	99	83.663	ENSCSEG00000008661	snd1	98	83.557	Cynoglossus_semilaevis
ENSMUSG00000001424	Snd1	100	83.333	ENSCVAG00000010316	snd1	100	82.989	Cyprinodon_variegatus
ENSMUSG00000001424	Snd1	100	83.790	ENSDARG00000006766	snd1	97	86.823	Danio_rerio
ENSMUSG00000001424	Snd1	97	94.927	ENSDNOG00000006795	SND1	100	94.927	Dasypus_novemcinctus
ENSMUSG00000001424	Snd1	100	98.462	ENSDORG00000000336	Snd1	100	98.462	Dipodomys_ordii
ENSMUSG00000001424	Snd1	96	53.234	FBgn0035121	Tudor-SN	97	50.546	Drosophila_melanogaster
ENSMUSG00000001424	Snd1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSMUSG00000001424	Snd1	86	67.733	ENSEBUG00000014201	-	84	78.142	Eptatretus_burgeri
ENSMUSG00000001424	Snd1	100	95.896	ENSEASG00005008513	SND1	100	95.896	Equus_asinus_asinus
ENSMUSG00000001424	Snd1	100	97.473	ENSECAG00000011451	SND1	100	97.473	Equus_caballus
ENSMUSG00000001424	Snd1	99	96.121	ENSEEUG00000014737	SND1	98	86.592	Erinaceus_europaeus
ENSMUSG00000001424	Snd1	99	81.908	ENSELUG00000001805	snd1	95	82.832	Esox_lucius
ENSMUSG00000001424	Snd1	100	97.473	ENSFCAG00000008289	SND1	100	97.473	Felis_catus
ENSMUSG00000001424	Snd1	100	97.692	ENSFDAG00000015881	SND1	100	97.692	Fukomys_damarensis
ENSMUSG00000001424	Snd1	98	83.993	ENSFHEG00000004093	snd1	97	83.935	Fundulus_heteroclitus
ENSMUSG00000001424	Snd1	64	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSMUSG00000001424	Snd1	53	95.580	ENSGALG00000052684	-	50	93.583	Gallus_gallus
ENSMUSG00000001424	Snd1	100	83.553	ENSGAFG00000008421	snd1	99	84.442	Gambusia_affinis
ENSMUSG00000001424	Snd1	100	53.637	ENSGACG00000019793	snd1	98	53.982	Gasterosteus_aculeatus
ENSMUSG00000001424	Snd1	100	97.582	ENSGGOG00000009614	SND1	100	97.582	Gorilla_gorilla
ENSMUSG00000001424	Snd1	99	83.278	ENSHBUG00000019135	snd1	99	83.929	Haplochromis_burtoni
ENSMUSG00000001424	Snd1	100	97.473	ENSHGLG00000003618	SND1	100	97.473	Heterocephalus_glaber_female
ENSMUSG00000001424	Snd1	99	97.127	ENSHGLG00100012449	SND1	100	97.127	Heterocephalus_glaber_male
ENSMUSG00000001424	Snd1	100	82.346	ENSHCOG00000005266	snd1	98	83.557	Hippocampus_comes
ENSMUSG00000001424	Snd1	99	83.279	ENSIPUG00000013279	snd1	98	83.185	Ictalurus_punctatus
ENSMUSG00000001424	Snd1	100	98.022	ENSSTOG00000002140	SND1	100	98.022	Ictidomys_tridecemlineatus
ENSMUSG00000001424	Snd1	100	98.022	ENSJJAG00000009561	Snd1	100	98.022	Jaculus_jaculus
ENSMUSG00000001424	Snd1	100	83.224	ENSKMAG00000016997	snd1	98	84.340	Kryptolebias_marmoratus
ENSMUSG00000001424	Snd1	100	84.060	ENSLBEG00000013563	snd1	98	82.998	Labrus_bergylta
ENSMUSG00000001424	Snd1	99	84.344	ENSLOCG00000015537	snd1	98	84.590	Lepisosteus_oculatus
ENSMUSG00000001424	Snd1	100	96.703	ENSLAFG00000009696	SND1	100	96.703	Loxodonta_africana
ENSMUSG00000001424	Snd1	100	97.582	ENSMFAG00000038114	SND1	100	97.582	Macaca_fascicularis
ENSMUSG00000001424	Snd1	100	97.582	ENSMMUG00000015432	SND1	100	97.582	Macaca_mulatta
ENSMUSG00000001424	Snd1	100	97.582	ENSMNEG00000039808	SND1	100	97.627	Macaca_nemestrina
ENSMUSG00000001424	Snd1	100	97.473	ENSMLEG00000029040	SND1	100	97.514	Mandrillus_leucophaeus
ENSMUSG00000001424	Snd1	99	84.411	ENSMAMG00000011739	snd1	98	84.040	Mastacembelus_armatus
ENSMUSG00000001424	Snd1	99	82.747	ENSMZEG00005005681	snd1	98	83.929	Maylandia_zebra
ENSMUSG00000001424	Snd1	100	97.692	ENSMICG00000000097	SND1	100	97.692	Microcebus_murinus
ENSMUSG00000001424	Snd1	100	98.681	ENSMOCG00000005040	Snd1	100	98.681	Microtus_ochrogaster
ENSMUSG00000001424	Snd1	100	83.114	ENSMMOG00000001795	snd1	98	84.116	Mola_mola
ENSMUSG00000001424	Snd1	99	94.760	ENSMODG00000015182	SND1	98	94.749	Monodelphis_domestica
ENSMUSG00000001424	Snd1	100	82.785	ENSMALG00000012071	snd1	98	83.594	Monopterus_albus
ENSMUSG00000001424	Snd1	100	99.780	MGP_CAROLIEiJ_G0028159	Snd1	100	99.780	Mus_caroli
ENSMUSG00000001424	Snd1	100	99.560	MGP_PahariEiJ_G0021917	Snd1	100	99.560	Mus_pahari
ENSMUSG00000001424	Snd1	100	99.780	MGP_SPRETEiJ_G0029159	Snd1	100	99.780	Mus_spretus
ENSMUSG00000001424	Snd1	100	97.363	ENSMPUG00000006545	SND1	100	97.363	Mustela_putorius_furo
ENSMUSG00000001424	Snd1	97	95.978	ENSMLUG00000017130	SND1	99	95.978	Myotis_lucifugus
ENSMUSG00000001424	Snd1	100	98.352	ENSNGAG00000011186	Snd1	100	98.352	Nannospalax_galili
ENSMUSG00000001424	Snd1	99	82.673	ENSNBRG00000006681	snd1	98	83.817	Neolamprologus_brichardi
ENSMUSG00000001424	Snd1	100	97.473	ENSNLEG00000012263	SND1	100	97.627	Nomascus_leucogenys
ENSMUSG00000001424	Snd1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSMUSG00000001424	Snd1	100	97.473	ENSODEG00000011502	SND1	100	97.473	Octodon_degus
ENSMUSG00000001424	Snd1	99	82.527	ENSONIG00000011481	snd1	96	83.705	Oreochromis_niloticus
ENSMUSG00000001424	Snd1	98	93.806	ENSOANG00000000817	SND1	98	93.296	Ornithorhynchus_anatinus
ENSMUSG00000001424	Snd1	100	96.374	ENSOCUG00000001620	SND1	100	96.374	Oryctolagus_cuniculus
ENSMUSG00000001424	Snd1	97	85.424	ENSORLG00000015201	snd1	98	83.464	Oryzias_latipes
ENSMUSG00000001424	Snd1	97	85.424	ENSORLG00020013991	snd1	98	83.575	Oryzias_latipes_hni
ENSMUSG00000001424	Snd1	97	85.424	ENSORLG00015012436	snd1	98	83.575	Oryzias_latipes_hsok
ENSMUSG00000001424	Snd1	100	82.675	ENSOMEG00000006406	snd1	98	83.893	Oryzias_melastigma
ENSMUSG00000001424	Snd1	100	97.039	ENSOGAG00000013356	SND1	94	97.039	Otolemur_garnettii
ENSMUSG00000001424	Snd1	97	95.028	ENSOARG00000002149	SND1	100	95.028	Ovis_aries
ENSMUSG00000001424	Snd1	100	97.473	ENSPPAG00000042947	SND1	100	97.473	Pan_paniscus
ENSMUSG00000001424	Snd1	100	97.473	ENSPPRG00000004494	SND1	100	97.473	Panthera_pardus
ENSMUSG00000001424	Snd1	100	97.363	ENSPTIG00000014214	SND1	100	97.363	Panthera_tigris_altaica
ENSMUSG00000001424	Snd1	100	97.473	ENSPTRG00000023911	SND1	100	97.473	Pan_troglodytes
ENSMUSG00000001424	Snd1	99	96.535	ENSPANG00000011997	SND1	99	97.624	Papio_anubis
ENSMUSG00000001424	Snd1	99	80.816	ENSPKIG00000023494	snd1	98	81.132	Paramormyrops_kingsleyae
ENSMUSG00000001424	Snd1	93	83.363	ENSPMGG00000003629	snd1	100	82.275	Periophthalmus_magnuspinnatus
ENSMUSG00000001424	Snd1	100	98.791	ENSPEMG00000010240	Snd1	100	98.791	Peromyscus_maniculatus_bairdii
ENSMUSG00000001424	Snd1	95	77.530	ENSPMAG00000007915	-	99	72.768	Petromyzon_marinus
ENSMUSG00000001424	Snd1	99	94.983	ENSPCIG00000011561	SND1	98	94.972	Phascolarctos_cinereus
ENSMUSG00000001424	Snd1	100	83.004	ENSPFOG00000001557	snd1	98	84.004	Poecilia_formosa
ENSMUSG00000001424	Snd1	100	83.004	ENSPLAG00000018459	snd1	95	84.004	Poecilia_latipinna
ENSMUSG00000001424	Snd1	100	83.443	ENSPMEG00000006803	snd1	98	84.452	Poecilia_mexicana
ENSMUSG00000001424	Snd1	100	83.333	ENSPREG00000002189	snd1	98	84.340	Poecilia_reticulata
ENSMUSG00000001424	Snd1	99	96.370	ENSPPYG00000017972	SND1	98	97.345	Pongo_abelii
ENSMUSG00000001424	Snd1	100	85.055	ENSPCAG00000011305	SND1	98	85.028	Procavia_capensis
ENSMUSG00000001424	Snd1	100	97.363	ENSPCOG00000026791	SND1	100	97.401	Propithecus_coquereli
ENSMUSG00000001424	Snd1	100	95.604	ENSPVAG00000013945	SND1	100	95.604	Pteropus_vampyrus
ENSMUSG00000001424	Snd1	99	82.747	ENSPNYG00000000932	snd1	98	83.929	Pundamilia_nyererei
ENSMUSG00000001424	Snd1	100	82.932	ENSPNAG00000001206	snd1	98	83.964	Pygocentrus_nattereri
ENSMUSG00000001424	Snd1	99	98.789	ENSRNOG00000031173	Snd1	99	98.789	Rattus_norvegicus
ENSMUSG00000001424	Snd1	95	97.744	ENSRBIG00000027782	-	93	97.909	Rhinopithecus_bieti
ENSMUSG00000001424	Snd1	100	97.582	ENSRROG00000033020	SND1	100	97.582	Rhinopithecus_roxellana
ENSMUSG00000001424	Snd1	100	97.582	ENSSBOG00000032461	SND1	100	97.582	Saimiri_boliviensis_boliviensis
ENSMUSG00000001424	Snd1	98	91.667	ENSSHAG00000015359	SND1	100	91.667	Sarcophilus_harrisii
ENSMUSG00000001424	Snd1	100	81.610	ENSSFOG00015001103	snd1	98	82.686	Scleropages_formosus
ENSMUSG00000001424	Snd1	98	83.445	ENSSMAG00000001932	snd1	93	83.445	Scophthalmus_maximus
ENSMUSG00000001424	Snd1	100	83.114	ENSSDUG00000002699	snd1	92	84.228	Seriola_dumerili
ENSMUSG00000001424	Snd1	100	76.096	ENSSLDG00000001950	snd1	98	77.069	Seriola_lalandi_dorsalis
ENSMUSG00000001424	Snd1	95	89.138	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSMUSG00000001424	Snd1	94	86.135	ENSSPUG00000017586	SND1	96	86.261	Sphenodon_punctatus
ENSMUSG00000001424	Snd1	98	84.095	ENSSPAG00000021398	snd1	96	85.864	Stegastes_partitus
ENSMUSG00000001424	Snd1	100	97.143	ENSSSCG00000016590	SND1	100	97.143	Sus_scrofa
ENSMUSG00000001424	Snd1	99	83.904	ENSTRUG00000014067	snd1	98	82.998	Takifugu_rubripes
ENSMUSG00000001424	Snd1	100	83.443	ENSTNIG00000011019	snd1	97	84.797	Tetraodon_nigroviridis
ENSMUSG00000001424	Snd1	93	92.099	ENSTBEG00000003999	SND1	100	92.099	Tupaia_belangeri
ENSMUSG00000001424	Snd1	100	92.857	ENSTTRG00000006059	SND1	100	92.857	Tursiops_truncatus
ENSMUSG00000001424	Snd1	91	87.080	ENSUAMG00000002820	-	86	87.838	Ursus_americanus
ENSMUSG00000001424	Snd1	91	97.909	ENSUAMG00000005604	-	93	97.909	Ursus_americanus
ENSMUSG00000001424	Snd1	100	97.363	ENSUMAG00000005960	SND1	100	97.363	Ursus_maritimus
ENSMUSG00000001424	Snd1	93	86.420	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSMUSG00000001424	Snd1	100	97.253	ENSVVUG00000007226	SND1	100	97.253	Vulpes_vulpes
ENSMUSG00000001424	Snd1	95	88.448	ENSXETG00000023043	snd1	100	83.638	Xenopus_tropicalis
ENSMUSG00000001424	Snd1	92	85.133	ENSXCOG00000013629	snd1	99	80.760	Xiphophorus_couchianus
ENSMUSG00000001424	Snd1	100	83.553	ENSXMAG00000011469	snd1	98	84.564	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0004518	nuclease activity	21873635.	IBA	Function
GO:0004519	endonuclease activity	-	ISO	Function
GO:0004521	endoribonuclease activity	-	ISO	Function
GO:0005515	protein binding	20937909.24981741.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	23571754.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	23571754.	IDA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0010564	regulation of cell cycle process	-	ISO	Process
GO:0010587	miRNA catabolic process	-	ISO	Process
GO:0016442	RISC complex	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0097433	dense body	23571754.	IDA	Component
GO:1905172	RISC complex binding	-	ISO	Function