EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001472 (Gene tree)
Gene ID: 66855
Gene Symbol: Tcf25
Alias: 1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1
Full Name: transcription factor 25 (basic helix-loop-helix)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 30083
Position: chr8: 123373753-123403835
Accession: 1914105
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000211964	-	898	-	-	- (aa)	-	-
ENSMUST00000212996	-	183	-	-	- (aa)	-	-
ENSMUST00000212571	-	2649	XM_011248487	ENSMUSP00000148531	625 (aa)	XP_011246789	Q8R3L2
ENSMUST00000212498	-	211	-	-	- (aa)	-	-
ENSMUST00000212569	-	1953	XM_006531298	ENSMUSP00000148454	651 (aa)	XP_006531361	B2ZAC8
ENSMUST00000212470	-	2572	XM_017312939	ENSMUSP00000148344	600 (aa)	-	Q8R3L2
ENSMUST00000108840	-	2582	XM_006531297	ENSMUSP00000104468	626 (aa)	XP_006531360	Q8R3L2
ENSMUST00000211932	-	5002	-	ENSMUSP00000148676	626 (aa)	-	A0A1D5RM90
ENSMUST00000212741	-	143	-	-	- (aa)	-	-
ENSMUST00000212880	-	827	-	ENSMUSP00000148504	110 (aa)	-	A0A1D5RLU0
ENSMUST00000057934	-	2738	XM_006531296	ENSMUSP00000056485	676 (aa)	XP_006531359	Q8R3L2

Gene Model

Click here to download ENSMUSG00000001472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001472's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001472	Tcf25	99	96.330	ENSG00000141002	TCF25	100	90.385	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	12107429.	IDA	Component
GO:0005634	nucleus	-	ISO	Component