EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001525 (Gene tree)
Gene ID: 22154
Gene Symbol: Tubb5
Alias: B130022C14Rik
Full Name: tubulin%2C beta 5 class I
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 4386
Position: chr17: 35833921-35838306
Accession: 107812
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000173253	-	979	-	-	- (aa)	-	-
ENSMUST00000001566	-	2649	-	ENSMUSP00000001566	444 (aa)	-	P99024
ENSMUST00000156050	-	711	-	-	- (aa)	-	-
ENSMUST00000134978	-	762	-	ENSMUSP00000134598	66 (aa)	-	G3UZR1

Gene Model

Click here to download ENSMUSG00000001525's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04145	Phagosome	KEGG
mmu04540	Gap junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001525's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001525	Tubb5	100	100.000	ENSG00000196230	TUBB	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0003924	GTPase activity	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	15121885.	IDA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005525	GTP binding	3782288.	NAS	Function
GO:0005634	nucleus	18480465.	IDA	Component
GO:0005641	nuclear envelope lumen	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005874	microtubule	15121885.	IDA	Component
GO:0005874	microtubule	-	ISO	Component
GO:0007017	microtubule-based process	21873635.	IBA	Process
GO:0007017	microtubule-based process	15121885.	IDA	Process
GO:0007017	microtubule-based process	3782288.	NAS	Process
GO:0009987	cellular process	-	ISO	Process
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0032794	GTPase activating protein binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042288	MHC class I protein binding	-	ISO	Function
GO:0044297	cell body	-	ISO	Component
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045121	membrane raft	-	ISO	Component
GO:0045298	tubulin complex	3782288.	NAS	Component
GO:0050807	regulation of synapse organization	24833723.	EXP	Process
GO:0050807	regulation of synapse organization	24833723.	IDA	Process
GO:0050807	regulation of synapse organization	24833723.	IMP	Process
GO:0051225	spindle assembly	15121885.	IDA	Process