EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001569 (Gene tree)
Gene ID: 433864
Gene Symbol: Nom1
Alias: D5Kng1|Gm1040|LOC381627
Full Name: nucleolar protein with MIF4G domain 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 23180 bases
Position: chr5:29434664-29457843
Accession: 1861749
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000001611	MA3	PF02847.17	3.2e-23	1	1
ENSMUSP00000001611	MIF4G	PF02854.19	5.2e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000001611	-	9219	XM_006535742	ENSMUSP00000001611	854 (aa)	XP_006535805	Q3UFM5
ENSMUST00000146347	-	531	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000001569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001569's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001569	Nom1	95	71.192	ENSG00000146909	NOM1	97	73.790	Homo_sapiens
ENSMUSG00000001569	Nom1	61	67.245	ENSAPOG00000012073	nom1	97	54.191	Acanthochromis_polyacanthus
ENSMUSG00000001569	Nom1	81	70.810	ENSAMEG00000001412	NOM1	99	70.670	Ailuropoda_melanoleuca
ENSMUSG00000001569	Nom1	83	67.630	ENSACIG00000018050	nom1	99	53.174	Amphilophus_citrinellus
ENSMUSG00000001569	Nom1	61	66.089	ENSAOCG00000006229	nom1	97	52.927	Amphiprion_ocellaris
ENSMUSG00000001569	Nom1	61	66.281	ENSAPEG00000015994	nom1	98	53.265	Amphiprion_percula
ENSMUSG00000001569	Nom1	83	57.240	ENSATEG00000005405	nom1	97	54.090	Anabas_testudineus
ENSMUSG00000001569	Nom1	76	63.706	ENSAPLG00000006585	NOM1	99	62.819	Anas_platyrhynchos
ENSMUSG00000001569	Nom1	67	66.494	ENSACAG00000011192	NOM1	99	55.365	Anolis_carolinensis
ENSMUSG00000001569	Nom1	94	53.118	ENSACLG00000000033	nom1	97	54.348	Astatotilapia_calliptera
ENSMUSG00000001569	Nom1	62	62.453	ENSAMXG00000041486	nom1	98	49.366	Astyanax_mexicanus
ENSMUSG00000001569	Nom1	95	63.120	ENSBTAG00000016435	NOM1	97	64.109	Bos_taurus
ENSMUSG00000001569	Nom1	95	70.108	ENSCJAG00000004336	NOM1	97	71.226	Callithrix_jacchus
ENSMUSG00000001569	Nom1	95	68.024	ENSCAFG00020005121	NOM1	97	68.075	Canis_lupus_dingo
ENSMUSG00000001569	Nom1	90	64.096	ENSCHIG00000020102	NOM1	96	64.748	Capra_hircus
ENSMUSG00000001569	Nom1	95	72.338	ENSTSYG00000000227	NOM1	97	72.043	Carlito_syrichta
ENSMUSG00000001569	Nom1	61	82.983	ENSCAPG00000016273	NOM1	100	82.983	Cavia_aperea
ENSMUSG00000001569	Nom1	95	68.856	ENSCPOG00000025538	NOM1	98	67.734	Cavia_porcellus
ENSMUSG00000001569	Nom1	95	55.396	ENSCCAG00000014944	NOM1	100	82.865	Cebus_capucinus
ENSMUSG00000001569	Nom1	82	71.770	ENSCLAG00000000267	NOM1	85	72.981	Chinchilla_lanigera
ENSMUSG00000001569	Nom1	70	73.410	ENSCPBG00000018215	NOM1	90	58.303	Chrysemys_picta_bellii
ENSMUSG00000001569	Nom1	84	34.524	ENSCING00000005248	-	98	35.007	Ciona_intestinalis
ENSMUSG00000001569	Nom1	69	77.458	ENSCANG00000041984	NOM1	99	77.458	Colobus_angolensis_palliatus
ENSMUSG00000001569	Nom1	95	80.680	ENSCGRG00001020293	Nom1	97	81.340	Cricetulus_griseus_chok1gshd
ENSMUSG00000001569	Nom1	62	90.414	ENSCGRG00000005405	Nom1	100	90.414	Cricetulus_griseus_crigri
ENSMUSG00000001569	Nom1	91	51.013	ENSCSEG00000000932	nom1	94	52.882	Cynoglossus_semilaevis
ENSMUSG00000001569	Nom1	94	53.110	ENSCVAG00000007562	nom1	97	52.398	Cyprinodon_variegatus
ENSMUSG00000001569	Nom1	95	52.878	ENSDARG00000060027	nom1	99	65.489	Danio_rerio
ENSMUSG00000001569	Nom1	80	64.834	ENSDORG00000015682	Nom1	100	66.618	Dipodomys_ordii
ENSMUSG00000001569	Nom1	58	38.703	FBgn0035336	CG9004	78	35.810	Drosophila_melanogaster
ENSMUSG00000001569	Nom1	98	55.399	ENSETEG00000003104	NOM1	99	55.920	Echinops_telfairi
ENSMUSG00000001569	Nom1	50	50.580	ENSEBUG00000010077	nom1	95	50.580	Eptatretus_burgeri
ENSMUSG00000001569	Nom1	79	75.632	ENSEASG00005001489	NOM1	96	70.286	Equus_asinus_asinus
ENSMUSG00000001569	Nom1	95	65.673	ENSECAG00000007596	NOM1	91	68.981	Equus_caballus
ENSMUSG00000001569	Nom1	61	66.284	ENSELUG00000006266	nom1	98	51.914	Esox_lucius
ENSMUSG00000001569	Nom1	95	66.388	ENSFCAG00000006467	NOM1	97	67.497	Felis_catus
ENSMUSG00000001569	Nom1	80	61.571	ENSFALG00000006904	NOM1	99	62.857	Ficedula_albicollis
ENSMUSG00000001569	Nom1	95	70.388	ENSFDAG00000016241	NOM1	98	70.652	Fukomys_damarensis
ENSMUSG00000001569	Nom1	94	54.136	ENSFHEG00000015974	nom1	97	53.771	Fundulus_heteroclitus
ENSMUSG00000001569	Nom1	79	53.725	ENSGMOG00000005129	nom1	99	50.814	Gadus_morhua
ENSMUSG00000001569	Nom1	97	55.684	ENSGALG00000006437	NOM1	93	56.491	Gallus_gallus
ENSMUSG00000001569	Nom1	62	64.312	ENSGAFG00000003211	nom1	97	53.584	Gambusia_affinis
ENSMUSG00000001569	Nom1	94	59.074	ENSGAGG00000014347	NOM1	98	59.524	Gopherus_agassizii
ENSMUSG00000001569	Nom1	95	71.875	ENSGGOG00000010920	NOM1	90	73.908	Gorilla_gorilla
ENSMUSG00000001569	Nom1	94	52.934	ENSHBUG00000014616	nom1	97	53.614	Haplochromis_burtoni
ENSMUSG00000001569	Nom1	96	70.375	ENSHGLG00000007392	NOM1	97	70.188	Heterocephalus_glaber_female
ENSMUSG00000001569	Nom1	83	84.810	ENSHGLG00100014407	NOM1	97	84.810	Heterocephalus_glaber_male
ENSMUSG00000001569	Nom1	63	61.296	ENSIPUG00000013980	nom1	98	50.652	Ictalurus_punctatus
ENSMUSG00000001569	Nom1	67	82.807	ENSSTOG00000031736	NOM1	99	82.807	Ictidomys_tridecemlineatus
ENSMUSG00000001569	Nom1	57	88.548	ENSJJAG00000011716	Nom1	99	88.548	Jaculus_jaculus
ENSMUSG00000001569	Nom1	61	66.346	ENSLBEG00000009252	nom1	97	51.639	Labrus_bergylta
ENSMUSG00000001569	Nom1	84	57.239	ENSLACG00000011777	NOM1	98	55.060	Latimeria_chalumnae
ENSMUSG00000001569	Nom1	94	54.945	ENSLOCG00000012452	nom1	99	54.523	Lepisosteus_oculatus
ENSMUSG00000001569	Nom1	95	63.724	ENSLAFG00000007119	NOM1	100	61.484	Loxodonta_africana
ENSMUSG00000001569	Nom1	95	68.876	ENSMMUG00000039033	NOM1	97	69.776	Macaca_mulatta
ENSMUSG00000001569	Nom1	62	84.280	ENSMLEG00000037062	NOM1	99	84.280	Mandrillus_leucophaeus
ENSMUSG00000001569	Nom1	94	51.934	ENSMAMG00000004118	nom1	97	52.091	Mastacembelus_armatus
ENSMUSG00000001569	Nom1	94	53.118	ENSMZEG00005000384	nom1	97	54.348	Maylandia_zebra
ENSMUSG00000001569	Nom1	80	62.787	ENSMGAG00000005051	NOM1	99	63.768	Meleagris_gallopavo
ENSMUSG00000001569	Nom1	100	78.696	ENSMAUG00000017988	Nom1	100	80.162	Mesocricetus_auratus
ENSMUSG00000001569	Nom1	95	70.158	ENSMICG00000017531	NOM1	98	71.496	Microcebus_murinus
ENSMUSG00000001569	Nom1	99	81.829	ENSMOCG00000015962	Nom1	99	82.063	Microtus_ochrogaster
ENSMUSG00000001569	Nom1	94	50.423	ENSMMOG00000004419	nom1	96	50.663	Mola_mola
ENSMUSG00000001569	Nom1	96	62.804	ENSMODG00000005177	NOM1	99	64.219	Monodelphis_domestica
ENSMUSG00000001569	Nom1	89	52.070	ENSMALG00000008800	nom1	97	53.001	Monopterus_albus
ENSMUSG00000001569	Nom1	100	97.190	MGP_CAROLIEiJ_G0027043	Nom1	100	97.190	Mus_caroli
ENSMUSG00000001569	Nom1	100	99.182	MGP_SPRETEiJ_G0028039	Nom1	100	99.182	Mus_spretus
ENSMUSG00000001569	Nom1	79	68.275	ENSMPUG00000009745	NOM1	100	68.687	Mustela_putorius_furo
ENSMUSG00000001569	Nom1	69	73.490	ENSMLUG00000009129	NOM1	99	73.490	Myotis_lucifugus
ENSMUSG00000001569	Nom1	94	54.545	ENSNBRG00000016429	nom1	93	66.859	Neolamprologus_brichardi
ENSMUSG00000001569	Nom1	95	69.693	ENSNLEG00000000238	NOM1	97	70.567	Nomascus_leucogenys
ENSMUSG00000001569	Nom1	85	64.286	ENSMEUG00000001108	NOM1	87	64.286	Notamacropus_eugenii
ENSMUSG00000001569	Nom1	85	61.594	ENSOPRG00000014676	NOM1	86	61.594	Ochotona_princeps
ENSMUSG00000001569	Nom1	81	74.286	ENSODEG00000009399	NOM1	100	75.857	Octodon_degus
ENSMUSG00000001569	Nom1	82	56.088	ENSONIG00000005958	nom1	99	54.614	Oreochromis_niloticus
ENSMUSG00000001569	Nom1	54	76.304	ENSOANG00000006139	-	97	76.304	Ornithorhynchus_anatinus
ENSMUSG00000001569	Nom1	92	60.728	ENSOCUG00000021448	-	100	60.629	Oryctolagus_cuniculus
ENSMUSG00000001569	Nom1	95	72.694	ENSOCUG00000004071	-	98	72.695	Oryctolagus_cuniculus
ENSMUSG00000001569	Nom1	93	51.683	ENSORLG00000010541	nom1	98	52.524	Oryzias_latipes
ENSMUSG00000001569	Nom1	78	56.729	ENSORLG00020010789	nom1	94	56.121	Oryzias_latipes_hni
ENSMUSG00000001569	Nom1	93	51.267	ENSORLG00015010475	nom1	98	52.153	Oryzias_latipes_hsok
ENSMUSG00000001569	Nom1	59	66.208	ENSOMEG00000004219	nom1	97	52.701	Oryzias_melastigma
ENSMUSG00000001569	Nom1	68	77.547	ENSOGAG00000001124	NOM1	100	75.246	Otolemur_garnettii
ENSMUSG00000001569	Nom1	79	67.977	ENSOARG00000007261	NOM1	98	66.986	Ovis_aries
ENSMUSG00000001569	Nom1	95	71.651	ENSPPAG00000041374	NOM1	97	73.672	Pan_paniscus
ENSMUSG00000001569	Nom1	82	69.391	ENSPTIG00000013532	NOM1	98	71.330	Panthera_tigris_altaica
ENSMUSG00000001569	Nom1	95	71.770	ENSPTRG00000019917	NOM1	97	73.908	Pan_troglodytes
ENSMUSG00000001569	Nom1	95	71.631	ENSPANG00000007605	NOM1	97	72.544	Papio_anubis
ENSMUSG00000001569	Nom1	95	50.894	ENSPKIG00000005825	nom1	98	51.132	Paramormyrops_kingsleyae
ENSMUSG00000001569	Nom1	65	71.532	ENSPSIG00000017848	NOM1	97	68.465	Pelodiscus_sinensis
ENSMUSG00000001569	Nom1	86	55.749	ENSPMGG00000002577	nom1	97	54.212	Periophthalmus_magnuspinnatus
ENSMUSG00000001569	Nom1	100	82.831	ENSPEMG00000024180	Nom1	100	83.643	Peromyscus_maniculatus_bairdii
ENSMUSG00000001569	Nom1	96	62.344	ENSPCIG00000027941	NOM1	95	62.785	Phascolarctos_cinereus
ENSMUSG00000001569	Nom1	61	66.667	ENSPFOG00000015771	nom1	98	53.349	Poecilia_formosa
ENSMUSG00000001569	Nom1	61	66.667	ENSPLAG00000007856	nom1	97	54.268	Poecilia_latipinna
ENSMUSG00000001569	Nom1	94	52.644	ENSPMEG00000014155	nom1	97	54.202	Poecilia_mexicana
ENSMUSG00000001569	Nom1	94	53.430	ENSPREG00000008850	nom1	97	53.486	Poecilia_reticulata
ENSMUSG00000001569	Nom1	95	68.750	ENSPPYG00000018222	NOM1	96	69.405	Pongo_abelii
ENSMUSG00000001569	Nom1	79	72.261	ENSPCAG00000000440	NOM1	99	57.232	Procavia_capensis
ENSMUSG00000001569	Nom1	62	81.629	ENSPCOG00000015222	NOM1	99	81.629	Propithecus_coquereli
ENSMUSG00000001569	Nom1	95	66.707	ENSPVAG00000014760	NOM1	98	67.139	Pteropus_vampyrus
ENSMUSG00000001569	Nom1	94	52.638	ENSPNYG00000006975	nom1	97	64.259	Pundamilia_nyererei
ENSMUSG00000001569	Nom1	63	60.781	ENSPNAG00000011085	nom1	98	47.811	Pygocentrus_nattereri
ENSMUSG00000001569	Nom1	95	86.084	ENSRNOG00000048969	AABR07059041.1	100	86.084	Rattus_norvegicus
ENSMUSG00000001569	Nom1	95	71.767	ENSRBIG00000037042	NOM1	97	72.598	Rhinopithecus_bieti
ENSMUSG00000001569	Nom1	95	71.530	ENSRROG00000037293	NOM1	97	72.361	Rhinopithecus_roxellana
ENSMUSG00000001569	Nom1	79	70.778	ENSSHAG00000017998	-	100	71.676	Sarcophilus_harrisii
ENSMUSG00000001569	Nom1	56	62.708	ENSSFOG00015003196	nom1	99	62.708	Scleropages_formosus
ENSMUSG00000001569	Nom1	94	52.347	ENSSMAG00000011047	nom1	98	52.324	Scophthalmus_maximus
ENSMUSG00000001569	Nom1	94	53.333	ENSSDUG00000006834	nom1	97	53.541	Seriola_dumerili
ENSMUSG00000001569	Nom1	94	53.486	ENSSLDG00000021812	nom1	97	53.110	Seriola_lalandi_dorsalis
ENSMUSG00000001569	Nom1	81	55.694	ENSSPUG00000002556	NOM1	86	78.689	Sphenodon_punctatus
ENSMUSG00000001569	Nom1	85	59.675	ENSTGUG00000000702	-	99	62.000	Taeniopygia_guttata
ENSMUSG00000001569	Nom1	84	53.298	ENSTRUG00000010239	nom1	97	53.204	Takifugu_rubripes
ENSMUSG00000001569	Nom1	94	50.481	ENSTNIG00000012783	nom1	99	52.605	Tetraodon_nigroviridis
ENSMUSG00000001569	Nom1	96	66.271	ENSTTRG00000009691	NOM1	99	67.260	Tursiops_truncatus
ENSMUSG00000001569	Nom1	95	66.746	ENSUAMG00000025450	NOM1	97	67.335	Ursus_americanus
ENSMUSG00000001569	Nom1	83	71.509	ENSUMAG00000014275	NOM1	100	71.509	Ursus_maritimus
ENSMUSG00000001569	Nom1	95	66.548	ENSVVUG00000002608	NOM1	97	67.409	Vulpes_vulpes
ENSMUSG00000001569	Nom1	96	52.669	ENSXETG00000021611	nom1	94	69.362	Xenopus_tropicalis
ENSMUSG00000001569	Nom1	94	54.015	ENSXMAG00000002451	nom1	97	54.313	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0042274	ribosomal small subunit biogenesis	21873635.	IBA	Process
GO:0048820	hair follicle maturation	25340873.	IMP	Process