EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000001767 (Gene tree)
Gene ID
66877
Gene Symbol
Crnkl1
Alias
1200013P10Rik|5730590A01Rik|crn
Full Name
crooked neck pre-mRNA splicing factor 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
17536 bases
Position
chr2:145917479-145935014
Accession
1914127
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000001818HATPF02184.163.3e-3912
ENSMUSP00000001818HATPF02184.163.3e-3922
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000145425-431--- (aa)--
ENSMUST00000001818-3428-ENSMUSP00000001818690 (aa)-P63154
ENSMUST00000147904-680--- (aa)--
Gene Model
Click here to download ENSMUSG00000001767's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001767's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000001767Crnkl19996.361ENSG00000101343CRNKL110096.361Homo_sapiens
ENSMUSG00000001767Crnkl19986.152ENSAPOG00000009705crnkl19786.074Acanthochromis_polyacanthus
ENSMUSG00000001767Crnkl19998.690ENSAMEG00000000270CRNKL18398.690Ailuropoda_melanoleuca
ENSMUSG00000001767Crnkl19886.202ENSACIG00000015267crnkl18986.202Amphilophus_citrinellus
ENSMUSG00000001767Crnkl19986.297ENSAOCG00000021964crnkl19186.297Amphiprion_ocellaris
ENSMUSG00000001767Crnkl19986.026ENSAPEG00000015041crnkl19186.026Amphiprion_percula
ENSMUSG00000001767Crnkl19985.320ENSATEG00000001068crnkl18986.176Anabas_testudineus
ENSMUSG00000001767Crnkl19990.247ENSAPLG00000013105CRNKL19990.247Anas_platyrhynchos
ENSMUSG00000001767Crnkl19992.679ENSACAG00000005284CRNKL19992.679Anolis_carolinensis
ENSMUSG00000001767Crnkl19296.994ENSANAG00000024889CRNKL110096.994Aotus_nancymaae
ENSMUSG00000001767Crnkl19986.172ENSACLG00000010813crnkl19186.172Astatotilapia_calliptera
ENSMUSG00000001767Crnkl19687.651ENSAMXG00000018334crnkl19385.590Astyanax_mexicanus
ENSMUSG00000001767Crnkl19996.948ENSBTAG00000008472CRNKL19996.948Bos_taurus
ENSMUSG00000001767Crnkl19361.957WBGene00019762M03F8.39360.776Caenorhabditis_elegans
ENSMUSG00000001767Crnkl19996.215ENSCJAG00000005393CRNKL110096.215Callithrix_jacchus
ENSMUSG00000001767Crnkl19998.399ENSCAFG00000005333CRNKL19498.399Canis_familiaris
ENSMUSG00000001767Crnkl19998.399ENSCAFG00020027488CRNKL110098.399Canis_lupus_dingo
ENSMUSG00000001767Crnkl19996.221ENSCHIG00000013171CRNKL19996.221Capra_hircus
ENSMUSG00000001767Crnkl19997.234ENSTSYG00000004197CRNKL110097.234Carlito_syrichta
ENSMUSG00000001767Crnkl19596.774ENSCAPG00000010501CRNKL19996.774Cavia_aperea
ENSMUSG00000001767Crnkl19996.943ENSCPOG00000004418CRNKL110096.943Cavia_porcellus
ENSMUSG00000001767Crnkl19996.215ENSCCAG00000027037CRNKL110096.215Cebus_capucinus
ENSMUSG00000001767Crnkl19996.361ENSCATG00000034247CRNKL110096.361Cercocebus_atys
ENSMUSG00000001767Crnkl19997.671ENSCLAG00000013859CRNKL110097.671Chinchilla_lanigera
ENSMUSG00000001767Crnkl19996.361ENSCSAG00000011434CRNKL110096.361Chlorocebus_sabaeus
ENSMUSG00000001767Crnkl19997.817ENSCHOG00000006371CRNKL18497.817Choloepus_hoffmanni
ENSMUSG00000001767Crnkl19994.015ENSCPBG00000023501CRNKL19994.015Chrysemys_picta_bellii
ENSMUSG00000001767Crnkl19669.335ENSCING00000002709-9967.690Ciona_intestinalis
ENSMUSG00000001767Crnkl19996.507ENSCANG00000038789CRNKL110096.507Colobus_angolensis_palliatus
ENSMUSG00000001767Crnkl110099.130ENSCGRG00001000687-10099.130Cricetulus_griseus_chok1gshd
ENSMUSG00000001767Crnkl110099.130ENSCGRG00001001115-10099.130Cricetulus_griseus_chok1gshd
ENSMUSG00000001767Crnkl110099.130ENSCGRG00000007854Crnkl110099.130Cricetulus_griseus_crigri
ENSMUSG00000001767Crnkl19885.926ENSCSEG00000005594crnkl18784.862Cynoglossus_semilaevis
ENSMUSG00000001767Crnkl19787.237ENSCVAG00000015172crnkl19285.298Cyprinodon_variegatus
ENSMUSG00000001767Crnkl19686.707ENSDARG00000007901crnkl19085.380Danio_rerio
ENSMUSG00000001767Crnkl19998.246ENSDNOG00000016226CRNKL19598.246Dasypus_novemcinctus
ENSMUSG00000001767Crnkl19788.955ENSDORG00000023724-9988.955Dipodomys_ordii
ENSMUSG00000001767Crnkl19996.825ENSDORG00000000394-10096.825Dipodomys_ordii
ENSMUSG00000001767Crnkl19788.358ENSDORG00000030174-9988.358Dipodomys_ordii
ENSMUSG00000001767Crnkl19669.219FBgn0000377crn9569.219Drosophila_melanogaster
ENSMUSG00000001767Crnkl19985.153ENSETEG00000003711CRNKL18485.153Echinops_telfairi
ENSMUSG00000001767Crnkl19961.155ENSEBUG00000013461crnkl19658.419Eptatretus_burgeri
ENSMUSG00000001767Crnkl19998.399ENSEASG00005002072CRNKL110098.399Equus_asinus_asinus
ENSMUSG00000001767Crnkl19998.399ENSECAG00000022215CRNKL110098.399Equus_caballus
ENSMUSG00000001767Crnkl19995.147ENSEEUG00000000413CRNKL19295.197Erinaceus_europaeus
ENSMUSG00000001767Crnkl19785.479ENSELUG00000015424crnkl19784.064Esox_lucius
ENSMUSG00000001767Crnkl19998.690ENSFCAG00000000714CRNKL110098.690Felis_catus
ENSMUSG00000001767Crnkl19791.518ENSFALG00000004611CRNKL110091.518Ficedula_albicollis
ENSMUSG00000001767Crnkl19997.671ENSFDAG00000000604CRNKL110097.671Fukomys_damarensis
ENSMUSG00000001767Crnkl19886.330ENSFHEG00000013163crnkl19085.072Fundulus_heteroclitus
ENSMUSG00000001767Crnkl19785.629ENSGMOG00000007609crnkl19483.843Gadus_morhua
ENSMUSG00000001767Crnkl19993.285ENSGALG00000008429CRNKL19993.285Gallus_gallus
ENSMUSG00000001767Crnkl19786.787ENSGAFG00000014249crnkl19085.109Gambusia_affinis
ENSMUSG00000001767Crnkl19984.795ENSGACG00000011852crnkl19184.795Gasterosteus_aculeatus
ENSMUSG00000001767Crnkl19592.835ENSGAGG00000021233CRNKL110092.908Gopherus_agassizii
ENSMUSG00000001767Crnkl19996.361ENSGGOG00000014176CRNKL110096.361Gorilla_gorilla
ENSMUSG00000001767Crnkl19986.026ENSHBUG00000005246crnkl19186.026Haplochromis_burtoni
ENSMUSG00000001767Crnkl19997.525ENSHGLG00000010856CRNKL110097.525Heterocephalus_glaber_female
ENSMUSG00000001767Crnkl19997.525ENSHGLG00100011521CRNKL110097.525Heterocephalus_glaber_male
ENSMUSG00000001767Crnkl19784.408ENSHCOG00000006420crnkl19982.533Hippocampus_comes
ENSMUSG00000001767Crnkl19675.639ENSIPUG00000006836-9974.852Ictalurus_punctatus
ENSMUSG00000001767Crnkl19487.365ENSIPUG00000006751crnkl19385.522Ictalurus_punctatus
ENSMUSG00000001767Crnkl19268.603ENSIPUG00000000315-10069.811Ictalurus_punctatus
ENSMUSG00000001767Crnkl19998.690ENSSTOG00000014747CRNKL110098.690Ictidomys_tridecemlineatus
ENSMUSG00000001767Crnkl19996.728ENSJJAG00000016926Crnkl110096.728Jaculus_jaculus
ENSMUSG00000001767Crnkl19985.714ENSKMAG00000003620crnkl18785.714Kryptolebias_marmoratus
ENSMUSG00000001767Crnkl19770.431ENSLBEG00000003543crnkl19272.661Labrus_bergylta
ENSMUSG00000001767Crnkl19987.848ENSLACG00000001129CRNKL19987.848Latimeria_chalumnae
ENSMUSG00000001767Crnkl19689.006ENSLOCG00000016889crnkl19587.573Lepisosteus_oculatus
ENSMUSG00000001767Crnkl19997.965ENSLAFG00000004512CRNKL110097.965Loxodonta_africana
ENSMUSG00000001767Crnkl19996.361ENSMFAG00000039893CRNKL110096.361Macaca_fascicularis
ENSMUSG00000001767Crnkl19996.361ENSMMUG00000007709CRNKL110096.361Macaca_mulatta
ENSMUSG00000001767Crnkl19996.361ENSMNEG00000037490CRNKL110096.361Macaca_nemestrina
ENSMUSG00000001767Crnkl19996.361ENSMLEG00000034885CRNKL110096.361Mandrillus_leucophaeus
ENSMUSG00000001767Crnkl19985.590ENSMAMG00000008757crnkl19185.590Mastacembelus_armatus
ENSMUSG00000001767Crnkl19986.172ENSMZEG00005022345crnkl19186.172Maylandia_zebra
ENSMUSG00000001767Crnkl19992.566ENSMGAG00000003452CRNKL19492.566Meleagris_gallopavo
ENSMUSG00000001767Crnkl110098.986ENSMAUG00000020764Crnkl110098.986Mesocricetus_auratus
ENSMUSG00000001767Crnkl19997.671ENSMICG00000006048CRNKL110097.671Microcebus_murinus
ENSMUSG00000001767Crnkl110091.026ENSMOCG00000000681-10091.026Microtus_ochrogaster
ENSMUSG00000001767Crnkl19670.420ENSMOCG00000004179-9869.320Microtus_ochrogaster
ENSMUSG00000001767Crnkl19185.261ENSMMOG00000017601crnkl19785.261Mola_mola
ENSMUSG00000001767Crnkl19991.954ENSMODG00000005961-9991.954Monodelphis_domestica
ENSMUSG00000001767Crnkl110085.942ENSMODG00000010857-10085.942Monodelphis_domestica
ENSMUSG00000001767Crnkl19962.063ENSMALG00000011211crnkl19062.428Monopterus_albus
ENSMUSG00000001767Crnkl110099.855MGP_CAROLIEiJ_G0024394Crnkl110099.855Mus_caroli
ENSMUSG00000001767Crnkl110097.971MGP_PahariEiJ_G0025838Crnkl110097.971Mus_pahari
ENSMUSG00000001767Crnkl110099.855MGP_SPRETEiJ_G0025312Crnkl110099.855Mus_spretus
ENSMUSG00000001767Crnkl19998.544ENSMPUG00000001226CRNKL110098.544Mustela_putorius_furo
ENSMUSG00000001767Crnkl19997.820ENSMLUG00000016513CRNKL18997.820Myotis_lucifugus
ENSMUSG00000001767Crnkl19996.286ENSNGAG00000023097Crnkl110096.286Nannospalax_galili
ENSMUSG00000001767Crnkl19986.317ENSNBRG00000007867crnkl19186.317Neolamprologus_brichardi
ENSMUSG00000001767Crnkl19992.868ENSNLEG00000009862CRNKL110092.868Nomascus_leucogenys
ENSMUSG00000001767Crnkl19795.075ENSMEUG00000012167-10095.075Notamacropus_eugenii
ENSMUSG00000001767Crnkl19986.047ENSMEUG00000002361-9986.047Notamacropus_eugenii
ENSMUSG00000001767Crnkl18668.147ENSOPRG00000009242-6168.147Ochotona_princeps
ENSMUSG00000001767Crnkl19997.525ENSODEG00000012175CRNKL110097.525Octodon_degus
ENSMUSG00000001767Crnkl19986.463ENSONIG00000018728crnkl19186.463Oreochromis_niloticus
ENSMUSG00000001767Crnkl19998.397ENSOCUG00000015484CRNKL18398.397Oryctolagus_cuniculus
ENSMUSG00000001767Crnkl19785.586ENSORLG00000017240crnkl19679.683Oryzias_latipes
ENSMUSG00000001767Crnkl19785.736ENSORLG00020001742crnkl18985.736Oryzias_latipes_hni
ENSMUSG00000001767Crnkl19785.736ENSORLG00015019564crnkl18985.736Oryzias_latipes_hsok
ENSMUSG00000001767Crnkl19984.672ENSOMEG00000019895crnkl19184.672Oryzias_melastigma
ENSMUSG00000001767Crnkl19996.652ENSOGAG00000011544CRNKL110096.652Otolemur_garnettii
ENSMUSG00000001767Crnkl19997.238ENSOARG00000002150CRNKL19097.238Ovis_aries
ENSMUSG00000001767Crnkl19995.147ENSPPAG00000027847CRNKL18395.197Pan_paniscus
ENSMUSG00000001767Crnkl19998.690ENSPPRG00000001955CRNKL110098.690Panthera_pardus
ENSMUSG00000001767Crnkl19998.690ENSPTIG00000007393CRNKL110098.690Panthera_tigris_altaica
ENSMUSG00000001767Crnkl19996.215ENSPTRG00000030609CRNKL110096.215Pan_troglodytes
ENSMUSG00000001767Crnkl19996.361ENSPANG00000017420CRNKL110096.361Papio_anubis
ENSMUSG00000001767Crnkl19683.008ENSPKIG00000017093crnkl18982.258Paramormyrops_kingsleyae
ENSMUSG00000001767Crnkl19992.826ENSPSIG00000012705CRNKL19992.826Pelodiscus_sinensis
ENSMUSG00000001767Crnkl19879.765ENSPMGG00000006263crnkl19679.381Periophthalmus_magnuspinnatus
ENSMUSG00000001767Crnkl110099.130ENSPEMG00000000073-9999.130Peromyscus_maniculatus_bairdii
ENSMUSG00000001767Crnkl19981.884ENSPMAG00000002250crnkl19981.884Petromyzon_marinus
ENSMUSG00000001767Crnkl19994.469ENSPCIG00000025825CRNKL19694.469Phascolarctos_cinereus
ENSMUSG00000001767Crnkl19786.637ENSPFOG00000005102crnkl19384.638Poecilia_formosa
ENSMUSG00000001767Crnkl19786.637ENSPLAG00000007288crnkl19084.515Poecilia_latipinna
ENSMUSG00000001767Crnkl19786.787ENSPMEG00000008865crnkl19484.783Poecilia_mexicana
ENSMUSG00000001767Crnkl19786.336ENSPREG00000012615crnkl19284.279Poecilia_reticulata
ENSMUSG00000001767Crnkl19996.361ENSPPYG00000010747CRNKL18196.361Pongo_abelii
ENSMUSG00000001767Crnkl19992.059ENSPCAG00000003296CRNKL18592.140Procavia_capensis
ENSMUSG00000001767Crnkl19996.361ENSPCOG00000017608CRNKL18396.361Propithecus_coquereli
ENSMUSG00000001767Crnkl19997.962ENSPVAG00000006207CRNKL18397.962Pteropus_vampyrus
ENSMUSG00000001767Crnkl19986.026ENSPNYG00000001977crnkl19186.026Pundamilia_nyererei
ENSMUSG00000001767Crnkl19788.507ENSPNAG00000001507crnkl19883.721Pygocentrus_nattereri
ENSMUSG00000001767Crnkl110099.565ENSRNOG00000040045Crnkl110099.565Rattus_norvegicus
ENSMUSG00000001767Crnkl1100100.000ENSRNOG00000010587Crnkl1100100.000Rattus_norvegicus
ENSMUSG00000001767Crnkl19996.215ENSRBIG00000031770CRNKL110096.215Rhinopithecus_bieti
ENSMUSG00000001767Crnkl19996.070ENSRROG00000040450CRNKL110096.070Rhinopithecus_roxellana
ENSMUSG00000001767Crnkl19437.536YLR117CCLF19937.627Saccharomyces_cerevisiae
ENSMUSG00000001767Crnkl19996.215ENSSBOG00000029672CRNKL110096.215Saimiri_boliviensis_boliviensis
ENSMUSG00000001767Crnkl19574.355ENSSHAG00000011199CRNKL19974.355Sarcophilus_harrisii
ENSMUSG00000001767Crnkl19687.764ENSSFOG00015000946crnkl18986.111Scleropages_formosus
ENSMUSG00000001767Crnkl19786.398ENSSMAG00000007933crnkl18786.398Scophthalmus_maximus
ENSMUSG00000001767Crnkl19979.330ENSSDUG00000012625crnkl18879.330Seriola_dumerili
ENSMUSG00000001767Crnkl19985.860ENSSLDG00000021413crnkl18985.860Seriola_lalandi_dorsalis
ENSMUSG00000001767Crnkl19997.234ENSSARG00000006443CRNKL18297.234Sorex_araneus
ENSMUSG00000001767Crnkl19993.119ENSSPUG00000005254CRNKL19993.119Sphenodon_punctatus
ENSMUSG00000001767Crnkl19985.631ENSSPAG00000016150crnkl18985.631Stegastes_partitus
ENSMUSG00000001767Crnkl19998.256ENSSSCG00000038587CRNKL19998.256Sus_scrofa
ENSMUSG00000001767Crnkl19991.983ENSTGUG00000007645CRNKL19891.983Taeniopygia_guttata
ENSMUSG00000001767Crnkl19780.838ENSTRUG00000015417crnkl19079.971Takifugu_rubripes
ENSMUSG00000001767Crnkl19785.007ENSTNIG00000010710crnkl19983.673Tetraodon_nigroviridis
ENSMUSG00000001767Crnkl19296.519ENSTBEG00000001304CRNKL18296.519Tupaia_belangeri
ENSMUSG00000001767Crnkl19193.920ENSTTRG00000000484CRNKL18193.987Tursiops_truncatus
ENSMUSG00000001767Crnkl19998.690ENSUAMG00000018586CRNKL110098.690Ursus_americanus
ENSMUSG00000001767Crnkl19998.690ENSUMAG00000024957CRNKL110098.690Ursus_maritimus
ENSMUSG00000001767Crnkl19998.399ENSVVUG00000012559CRNKL18298.399Vulpes_vulpes
ENSMUSG00000001767Crnkl19990.684ENSXETG00000009698crnkl19990.684Xenopus_tropicalis
ENSMUSG00000001767Crnkl19785.907ENSXCOG00000000824crnkl19184.187Xiphophorus_couchianus
ENSMUSG00000001767Crnkl19786.787ENSXMAG00000006896crnkl19185.044Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000245spliceosomal complex assembly21873635.IBAProcess
GO:0000245spliceosomal complex assembly-ISOProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome12084575.ISOProcess
GO:0000974Prp19 complex21873635.IBAComponent
GO:0003723RNA binding-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005681spliceosomal complex12084575.ISOComponent
GO:0006396RNA processing-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0071007U2-type catalytic step 2 spliceosome21873635.IBAComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071014post-mRNA release spliceosomal complex21873635.IBAComponent

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