EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000152235	-	783	-	-	- (aa)	-	-
ENSMUST00000089217	-	4044	-	ENSMUSP00000086626	1058 (aa)	-	Q02053
ENSMUST00000001989	-	4071	-	ENSMUSP00000001989	1058 (aa)	-	Q02053
ENSMUST00000130694	-	575	-	-	- (aa)	-	-
ENSMUST00000136915	-	761	-	-	- (aa)	-	-
ENSMUST00000137892	-	830	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04120	Ubiquitin mediated proteolysis	KEGG
mmu05012	Parkinson disease	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001924	Uba1	100	95.558	ENSG00000130985	UBA1	100	95.558	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000792	heterochromatin	-	ISO	Component
GO:0004839	ubiquitin activating enzyme activity	21873635.	IBA	Function
GO:0004839	ubiquitin activating enzyme activity	1511901.	IDA	Function
GO:0004839	ubiquitin activating enzyme activity	-	ISO	Function
GO:0005515	protein binding	23055941.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005765	lysosomal membrane	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006464	cellular protein modification process	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008641	ubiquitin-like modifier activating enzyme activity	-	IEA	Function
GO:0010008	endosome membrane	-	ISO	Component
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0030057	desmosome	-	ISO	Component
GO:0030867	rough endoplasmic reticulum membrane	-	ISO	Component
GO:0032446	protein modification by small protein conjugation	21873635.	IBA	Process