EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000001962 (Gene tree)
Gene ID: 108160
Gene Symbol: Fam50a
Alias: D0HXS9928E|XAP-5
Full Name: family with sequence similarity 50%2C member A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 7117
Position: chrX: 74313033-74320149
Accession: 1351626
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000149312	-	368	-	-	- (aa)	-	-
ENSMUST00000114160	-	1383	-	ENSMUSP00000109797	339 (aa)	-	Q9WV03
ENSMUST00000138242	-	1918	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000001962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000001962's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000001962	Fam50a	100	61.972	FBgn0039557	CG12259	98	61.972	Drosophila_melanogaster
ENSMUSG00000001962	Fam50a	100	98.230	ENSG00000071859	FAM50A	100	98.230	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component