EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000002052 (Gene tree)
Gene ID: 20926
Gene Symbol: Supt6
Alias: 5131400N11Rik|SPT6|Supt6h
Full Name: suppressor of Ty 6
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 39242 bases
Position: chr11:78206746-78245987
Accession: 107726
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000002121	S1	PF00575.23	2.4e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000108314	-	3856	-	-	- (aa)	-	-
ENSMUST00000002121	-	6488	XM_006532743	ENSMUSP00000002121	1726 (aa)	XP_006532806	Q62383

Gene Model

Click here to download ENSMUSG00000002052's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002052's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000002052	Supt6	100	98.088	ENSG00000109111	SUPT6H	100	98.088	Homo_sapiens
ENSMUSG00000002052	Supt6	89	79.974	ENSAPOG00000019366	supt6h	95	80.013	Acanthochromis_polyacanthus
ENSMUSG00000002052	Supt6	100	98.204	ENSAMEG00000004744	SUPT6H	100	98.204	Ailuropoda_melanoleuca
ENSMUSG00000002052	Supt6	88	80.774	ENSACIG00000004887	supt6h	96	80.643	Amphilophus_citrinellus
ENSMUSG00000002052	Supt6	98	76.353	ENSAOCG00000007013	supt6h	92	79.639	Amphiprion_ocellaris
ENSMUSG00000002052	Supt6	98	76.162	ENSAPEG00000018434	supt6h	100	74.208	Amphiprion_percula
ENSMUSG00000002052	Supt6	89	78.266	ENSATEG00000006950	supt6h	93	77.850	Anabas_testudineus
ENSMUSG00000002052	Supt6	100	92.441	ENSAPLG00000001319	SUPT6H	100	92.845	Anas_platyrhynchos
ENSMUSG00000002052	Supt6	100	97.809	ENSANAG00000029355	SUPT6H	100	97.809	Aotus_nancymaae
ENSMUSG00000002052	Supt6	89	80.556	ENSACLG00000005753	supt6h	96	80.556	Astatotilapia_calliptera
ENSMUSG00000002052	Supt6	92	82.232	ENSAMXG00000006025	supt6h	94	79.832	Astyanax_mexicanus
ENSMUSG00000002052	Supt6	100	97.740	ENSBTAG00000009036	SUPT6H	100	97.740	Bos_taurus
ENSMUSG00000002052	Supt6	78	38.456	WBGene00001259	emb-5	87	38.009	Caenorhabditis_elegans
ENSMUSG00000002052	Supt6	99	96.404	ENSCJAG00000012982	SUPT6H	99	96.404	Callithrix_jacchus
ENSMUSG00000002052	Supt6	100	98.320	ENSCAFG00000018763	SUPT6H	100	98.320	Canis_familiaris
ENSMUSG00000002052	Supt6	100	98.320	ENSCAFG00020011752	SUPT6H	100	98.320	Canis_lupus_dingo
ENSMUSG00000002052	Supt6	100	97.509	ENSCHIG00000025101	SUPT6H	100	97.509	Capra_hircus
ENSMUSG00000002052	Supt6	100	98.378	ENSTSYG00000004539	SUPT6H	100	98.378	Carlito_syrichta
ENSMUSG00000002052	Supt6	100	75.751	ENSCAPG00000016785	SUPT6H	100	75.577	Cavia_aperea
ENSMUSG00000002052	Supt6	100	98.030	ENSCPOG00000001442	SUPT6H	100	98.030	Cavia_porcellus
ENSMUSG00000002052	Supt6	100	98.204	ENSCCAG00000031442	SUPT6H	100	98.204	Cebus_capucinus
ENSMUSG00000002052	Supt6	100	98.146	ENSCATG00000041242	SUPT6H	100	98.146	Cercocebus_atys
ENSMUSG00000002052	Supt6	100	98.030	ENSCLAG00000006422	SUPT6H	100	98.030	Chinchilla_lanigera
ENSMUSG00000002052	Supt6	84	97.619	ENSCSAG00000007178	SUPT6H	92	97.619	Chlorocebus_sabaeus
ENSMUSG00000002052	Supt6	100	92.824	ENSCPBG00000020288	SUPT6H	100	93.171	Chrysemys_picta_bellii
ENSMUSG00000002052	Supt6	100	98.088	ENSCANG00000026929	SUPT6H	100	98.088	Colobus_angolensis_palliatus
ENSMUSG00000002052	Supt6	100	98.957	ENSCGRG00000008708	Supt6	100	98.957	Cricetulus_griseus_crigri
ENSMUSG00000002052	Supt6	89	78.433	ENSCSEG00000018147	supt6h	99	78.391	Cynoglossus_semilaevis
ENSMUSG00000002052	Supt6	89	80.739	ENSCVAG00000021195	supt6h	100	80.415	Cyprinodon_variegatus
ENSMUSG00000002052	Supt6	97	79.918	ENSDARG00000006524	supt6h	95	80.348	Danio_rerio
ENSMUSG00000002052	Supt6	100	98.146	ENSDNOG00000019476	SUPT6H	100	98.146	Dasypus_novemcinctus
ENSMUSG00000002052	Supt6	95	47.213	FBgn0028982	Spt6	87	48.500	Drosophila_melanogaster
ENSMUSG00000002052	Supt6	100	98.204	ENSEASG00005009905	SUPT6H	100	98.204	Equus_asinus_asinus
ENSMUSG00000002052	Supt6	100	98.204	ENSECAG00000020521	SUPT6H	100	98.204	Equus_caballus
ENSMUSG00000002052	Supt6	63	100.000	ENSEEUG00000008265	-	61	100.000	Erinaceus_europaeus
ENSMUSG00000002052	Supt6	88	80.470	ENSELUG00000005639	supt6h	94	80.521	Esox_lucius
ENSMUSG00000002052	Supt6	92	79.751	ENSELUG00000022246	SUPT6H	96	80.787	Esox_lucius
ENSMUSG00000002052	Supt6	100	98.378	ENSFCAG00000004014	SUPT6H	100	98.378	Felis_catus
ENSMUSG00000002052	Supt6	100	92.245	ENSFALG00000006393	SUPT6H	100	91.898	Ficedula_albicollis
ENSMUSG00000002052	Supt6	100	97.914	ENSFDAG00000016453	SUPT6H	100	97.914	Fukomys_damarensis
ENSMUSG00000002052	Supt6	100	75.366	ENSFHEG00000004556	supt6h	95	77.475	Fundulus_heteroclitus
ENSMUSG00000002052	Supt6	97	75.059	ENSGMOG00000007109	supt6h	100	74.499	Gadus_morhua
ENSMUSG00000002052	Supt6	100	92.361	ENSGALG00000000146	SUPT6H	100	92.886	Gallus_gallus
ENSMUSG00000002052	Supt6	92	80.339	ENSGAFG00000000803	supt6h	96	80.739	Gambusia_affinis
ENSMUSG00000002052	Supt6	100	76.659	ENSGACG00000020513	supt6h	100	78.815	Gasterosteus_aculeatus
ENSMUSG00000002052	Supt6	100	92.766	ENSGAGG00000016728	SUPT6H	100	93.113	Gopherus_agassizii
ENSMUSG00000002052	Supt6	100	98.204	ENSGGOG00000016688	SUPT6H	100	98.204	Gorilla_gorilla
ENSMUSG00000002052	Supt6	89	80.817	ENSHBUG00000021694	supt6h	96	80.857	Haplochromis_burtoni
ENSMUSG00000002052	Supt6	100	98.088	ENSHGLG00000018764	SUPT6H	100	98.088	Heterocephalus_glaber_female
ENSMUSG00000002052	Supt6	100	98.030	ENSHGLG00100018216	SUPT6H	100	98.030	Heterocephalus_glaber_male
ENSMUSG00000002052	Supt6	97	79.623	ENSIPUG00000024533	supt6h	95	81.246	Ictalurus_punctatus
ENSMUSG00000002052	Supt6	100	98.146	ENSSTOG00000000577	SUPT6H	100	98.146	Ictidomys_tridecemlineatus
ENSMUSG00000002052	Supt6	100	98.320	ENSJJAG00000013309	Supt6	100	98.320	Jaculus_jaculus
ENSMUSG00000002052	Supt6	100	75.154	ENSKMAG00000019294	supt6h	94	77.671	Kryptolebias_marmoratus
ENSMUSG00000002052	Supt6	96	76.523	ENSLBEG00000027907	supt6h	96	76.946	Labrus_bergylta
ENSMUSG00000002052	Supt6	97	85.476	ENSLACG00000003186	SUPT6H	100	84.624	Latimeria_chalumnae
ENSMUSG00000002052	Supt6	100	98.088	ENSLAFG00000017945	SUPT6H	100	98.088	Loxodonta_africana
ENSMUSG00000002052	Supt6	100	98.146	ENSMFAG00000040784	SUPT6H	100	98.146	Macaca_fascicularis
ENSMUSG00000002052	Supt6	100	98.146	ENSMMUG00000004708	SUPT6H	100	98.146	Macaca_mulatta
ENSMUSG00000002052	Supt6	98	98.166	ENSMLEG00000030076	SUPT6H	100	99.544	Mandrillus_leucophaeus
ENSMUSG00000002052	Supt6	100	75.930	ENSMAMG00000020232	supt6h	99	77.598	Mastacembelus_armatus
ENSMUSG00000002052	Supt6	89	80.556	ENSMZEG00005024774	supt6h	96	80.556	Maylandia_zebra
ENSMUSG00000002052	Supt6	100	92.998	ENSMGAG00000005881	SUPT6H	100	92.940	Meleagris_gallopavo
ENSMUSG00000002052	Supt6	100	98.783	ENSMAUG00000012146	Supt6	100	98.783	Mesocricetus_auratus
ENSMUSG00000002052	Supt6	100	97.519	ENSMICG00000016884	SUPT6H	100	97.519	Microcebus_murinus
ENSMUSG00000002052	Supt6	100	98.957	ENSMOCG00000021959	Supt6	100	98.957	Microtus_ochrogaster
ENSMUSG00000002052	Supt6	88	80.512	ENSMMOG00000010942	supt6h	94	80.433	Mola_mola
ENSMUSG00000002052	Supt6	100	95.831	ENSMODG00000019291	SUPT6H	100	96.241	Monodelphis_domestica
ENSMUSG00000002052	Supt6	85	80.271	ENSMALG00000000093	supt6h	93	79.151	Monopterus_albus
ENSMUSG00000002052	Supt6	100	99.710	MGP_CAROLIEiJ_G0016796	Supt6	100	99.710	Mus_caroli
ENSMUSG00000002052	Supt6	100	97.393	MGP_PahariEiJ_G0017933	Supt6	100	97.393	Mus_pahari
ENSMUSG00000002052	Supt6	100	100.000	MGP_SPRETEiJ_G0017639	Supt6	100	100.000	Mus_spretus
ENSMUSG00000002052	Supt6	100	98.320	ENSMPUG00000014195	SUPT6H	100	98.320	Mustela_putorius_furo
ENSMUSG00000002052	Supt6	100	97.625	ENSMLUG00000012423	SUPT6H	100	97.625	Myotis_lucifugus
ENSMUSG00000002052	Supt6	100	98.146	ENSNGAG00000012801	Supt6	100	98.146	Nannospalax_galili
ENSMUSG00000002052	Supt6	84	80.887	ENSNBRG00000001035	supt6h	95	79.329	Neolamprologus_brichardi
ENSMUSG00000002052	Supt6	100	95.655	ENSNLEG00000002730	SUPT6H	100	99.240	Nomascus_leucogenys
ENSMUSG00000002052	Supt6	91	91.888	ENSMEUG00000009404	SUPT6H	91	91.635	Notamacropus_eugenii
ENSMUSG00000002052	Supt6	100	97.972	ENSOPRG00000012549	SUPT6H	100	97.972	Ochotona_princeps
ENSMUSG00000002052	Supt6	100	97.683	ENSODEG00000011930	SUPT6H	100	97.683	Octodon_degus
ENSMUSG00000002052	Supt6	89	80.774	ENSONIG00000005512	supt6h	100	77.351	Oreochromis_niloticus
ENSMUSG00000002052	Supt6	100	97.918	ENSOCUG00000000848	SUPT6H	100	97.918	Oryctolagus_cuniculus
ENSMUSG00000002052	Supt6	88	80.946	ENSORLG00000003098	supt6h	91	80.815	Oryzias_latipes
ENSMUSG00000002052	Supt6	89	78.884	ENSORLG00020016222	supt6h	94	77.825	Oryzias_latipes_hni
ENSMUSG00000002052	Supt6	89	78.884	ENSORLG00015021046	supt6h	94	77.825	Oryzias_latipes_hsok
ENSMUSG00000002052	Supt6	92	77.805	ENSOMEG00000010277	supt6h	94	77.158	Oryzias_melastigma
ENSMUSG00000002052	Supt6	100	94.271	ENSOGAG00000012089	SUPT6H	100	94.271	Otolemur_garnettii
ENSMUSG00000002052	Supt6	100	96.360	ENSOARG00000002727	SUPT6H	100	96.360	Ovis_aries
ENSMUSG00000002052	Supt6	100	98.088	ENSPPAG00000036720	SUPT6H	100	98.088	Pan_paniscus
ENSMUSG00000002052	Supt6	100	98.204	ENSPPRG00000024588	SUPT6H	100	98.204	Panthera_pardus
ENSMUSG00000002052	Supt6	100	96.999	ENSPTIG00000014860	SUPT6H	100	96.999	Panthera_tigris_altaica
ENSMUSG00000002052	Supt6	100	98.088	ENSPTRG00000008929	SUPT6H	100	98.088	Pan_troglodytes
ENSMUSG00000002052	Supt6	100	95.017	ENSPANG00000023444	SUPT6H	100	95.017	Papio_anubis
ENSMUSG00000002052	Supt6	97	81.556	ENSPKIG00000013468	supt6h	99	79.643	Paramormyrops_kingsleyae
ENSMUSG00000002052	Supt6	100	98.841	ENSPEMG00000009972	Supt6	100	98.841	Peromyscus_maniculatus_bairdii
ENSMUSG00000002052	Supt6	100	96.298	ENSPCIG00000017943	SUPT6H	100	96.298	Phascolarctos_cinereus
ENSMUSG00000002052	Supt6	100	76.011	ENSPFOG00000011171	supt6h	94	77.804	Poecilia_formosa
ENSMUSG00000002052	Supt6	89	79.845	ENSPLAG00000005137	supt6h	95	80.013	Poecilia_latipinna
ENSMUSG00000002052	Supt6	100	75.955	ENSPMEG00000013302	supt6h	94	77.744	Poecilia_mexicana
ENSMUSG00000002052	Supt6	100	75.576	ENSPREG00000009725	supt6h	94	77.744	Poecilia_reticulata
ENSMUSG00000002052	Supt6	96	99.628	ENSPPYG00000008105	SUPT6H	100	99.628	Pongo_abelii
ENSMUSG00000002052	Supt6	100	95.384	ENSPCOG00000021329	SUPT6H	100	99.544	Propithecus_coquereli
ENSMUSG00000002052	Supt6	89	80.570	ENSPNYG00000017271	supt6h	96	80.610	Pundamilia_nyererei
ENSMUSG00000002052	Supt6	88	83.301	ENSPNAG00000015154	supt6h	94	82.779	Pygocentrus_nattereri
ENSMUSG00000002052	Supt6	100	99.594	ENSRNOG00000012240	Supt6h	100	99.594	Rattus_norvegicus
ENSMUSG00000002052	Supt6	100	98.088	ENSRBIG00000015392	SUPT6H	100	98.088	Rhinopithecus_bieti
ENSMUSG00000002052	Supt6	100	98.088	ENSRROG00000035461	SUPT6H	100	98.088	Rhinopithecus_roxellana
ENSMUSG00000002052	Supt6	100	93.060	ENSSBOG00000028535	SUPT6H	100	99.544	Saimiri_boliviensis_boliviensis
ENSMUSG00000002052	Supt6	100	96.247	ENSSHAG00000014414	SUPT6H	100	96.762	Sarcophilus_harrisii
ENSMUSG00000002052	Supt6	95	80.469	ENSSFOG00015005320	supt6h	98	78.112	Scleropages_formosus
ENSMUSG00000002052	Supt6	89	77.834	ENSSMAG00000000771	supt6h	100	75.127	Scophthalmus_maximus
ENSMUSG00000002052	Supt6	85	80.984	ENSSDUG00000016786	supt6h	90	79.699	Seriola_dumerili
ENSMUSG00000002052	Supt6	85	79.231	ENSSLDG00000014842	supt6h	89	77.996	Seriola_lalandi_dorsalis
ENSMUSG00000002052	Supt6	100	95.483	ENSSARG00000006988	SUPT6H	100	95.483	Sorex_araneus
ENSMUSG00000002052	Supt6	100	92.423	ENSSPUG00000006119	SUPT6H	100	92.539	Sphenodon_punctatus
ENSMUSG00000002052	Supt6	95	77.831	ENSSPAG00000016590	supt6h	95	80.220	Stegastes_partitus
ENSMUSG00000002052	Supt6	93	98.378	ENSSSCG00000017773	SUPT6H	100	98.378	Sus_scrofa
ENSMUSG00000002052	Supt6	100	91.850	ENSTGUG00000006101	SUPT6H	100	91.676	Taeniopygia_guttata
ENSMUSG00000002052	Supt6	100	75.226	ENSTRUG00000014399	supt6h	100	74.802	Takifugu_rubripes
ENSMUSG00000002052	Supt6	100	75.157	ENSTNIG00000016157	supt6h	100	73.953	Tetraodon_nigroviridis
ENSMUSG00000002052	Supt6	98	87.537	ENSTBEG00000001874	SUPT6H	97	87.485	Tupaia_belangeri
ENSMUSG00000002052	Supt6	100	97.396	ENSTTRG00000004092	SUPT6H	100	97.396	Tursiops_truncatus
ENSMUSG00000002052	Supt6	100	98.262	ENSUAMG00000003188	SUPT6H	100	98.524	Ursus_americanus
ENSMUSG00000002052	Supt6	100	98.030	ENSUMAG00000011783	SUPT6H	100	98.030	Ursus_maritimus
ENSMUSG00000002052	Supt6	100	98.320	ENSVVUG00000017049	SUPT6H	100	98.320	Vulpes_vulpes
ENSMUSG00000002052	Supt6	97	82.263	ENSXETG00000019265	supt6h	97	82.027	Xenopus_tropicalis
ENSMUSG00000002052	Supt6	89	80.155	ENSXMAG00000014242	supt6h	95	80.583	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005515	protein binding	17234882.19141475.21518874.22843687.23503590.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008023	transcription elongation factor complex	21873635.	IBA	Component
GO:0008380	RNA splicing	-	IEA	Process
GO:0010793	regulation of mRNA export from nucleus	17234882.	IMP	Process
GO:0031491	nucleosome binding	21873635.	IBA	Function
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	17234882.	IMP	Process
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	-	ISO	Process
GO:0034728	nucleosome organization	21873635.	IBA	Process
GO:0035327	transcriptionally active chromatin	21873635.	IBA	Component
GO:0042393	histone binding	21873635.	IBA	Function
GO:0042393	histone binding	-	ISO	Function
GO:0042789	mRNA transcription by RNA polymerase II	21873635.	IBA	Process
GO:0045191	regulation of isotype switching	21518874.	IMP	Process
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process
GO:0050684	regulation of mRNA processing	17234882.	IMP	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0051147	regulation of muscle cell differentiation	23503590.	IMP	Process
GO:0061086	negative regulation of histone H3-K27 methylation	23503590.	IMP	Process
GO:0061086	negative regulation of histone H3-K27 methylation	-	ISO	Process
GO:0070827	chromatin maintenance	21873635.	IBA	Process