EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000002129 (Gene tree)
Gene ID: 67465
Gene Symbol: Sf3a1
Alias: 1200014H24Rik|5930416L09Rik
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 22192 bases
Position: chr11:4160350-4182541
Accession: 1914715
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000002198	PRP21_like_P	PF12230.8	1.8e-51	1	1
ENSMUSP00000002198	Surp	PF01805.20	1.5e-45	1	2
ENSMUSP00000002198	Surp	PF01805.20	1.5e-45	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000133095	-	846	-	-	- (aa)	-	-
ENSMUST00000132666	-	1636	-	-	- (aa)	-	-
ENSMUST00000129583	-	424	-	-	- (aa)	-	-
ENSMUST00000002198	-	4920	-	ENSMUSP00000002198	791 (aa)	-	Q8K4Z5

Gene Model

Click here to download ENSMUSG00000002129's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002129's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000002129	Sf3a1	100	98.108	ENSG00000099995	SF3A1	100	98.108	Homo_sapiens
ENSMUSG00000002129	Sf3a1	99	83.439	ENSAPOG00000020465	sf3a1	99	84.833	Acanthochromis_polyacanthus
ENSMUSG00000002129	Sf3a1	100	97.484	ENSAMEG00000007737	SF3A1	100	97.484	Ailuropoda_melanoleuca
ENSMUSG00000002129	Sf3a1	99	84.586	ENSACIG00000020672	sf3a1	98	85.677	Amphilophus_citrinellus
ENSMUSG00000002129	Sf3a1	99	83.038	ENSAOCG00000003060	sf3a1	99	84.576	Amphiprion_ocellaris
ENSMUSG00000002129	Sf3a1	99	83.165	ENSAPEG00000010735	sf3a1	99	84.704	Amphiprion_percula
ENSMUSG00000002129	Sf3a1	97	85.436	ENSATEG00000021201	sf3a1	97	85.566	Anabas_testudineus
ENSMUSG00000002129	Sf3a1	95	93.527	ENSAPLG00000009057	SF3A1	99	92.367	Anas_platyrhynchos
ENSMUSG00000002129	Sf3a1	100	85.714	ENSACAG00000009415	SF3A1	100	86.330	Anolis_carolinensis
ENSMUSG00000002129	Sf3a1	100	98.108	ENSANAG00000032045	SF3A1	100	98.108	Aotus_nancymaae
ENSMUSG00000002129	Sf3a1	99	84.411	ENSACLG00000012622	sf3a1	99	84.942	Astatotilapia_calliptera
ENSMUSG00000002129	Sf3a1	99	83.439	ENSAMXG00000005382	sf3a1	98	84.605	Astyanax_mexicanus
ENSMUSG00000002129	Sf3a1	100	98.235	ENSBTAG00000003390	SF3A1	100	98.235	Bos_taurus
ENSMUSG00000002129	Sf3a1	84	43.423	WBGene00004188	prp-21	90	44.847	Caenorhabditis_elegans
ENSMUSG00000002129	Sf3a1	100	98.108	ENSCJAG00000010370	SF3A1	100	98.108	Callithrix_jacchus
ENSMUSG00000002129	Sf3a1	100	97.982	ENSCAFG00000012559	SF3A1	100	97.982	Canis_familiaris
ENSMUSG00000002129	Sf3a1	100	97.982	ENSCAFG00020000838	SF3A1	100	97.982	Canis_lupus_dingo
ENSMUSG00000002129	Sf3a1	100	98.108	ENSCHIG00000018642	SF3A1	100	98.108	Capra_hircus
ENSMUSG00000002129	Sf3a1	100	98.235	ENSTSYG00000004739	SF3A1	100	98.235	Carlito_syrichta
ENSMUSG00000002129	Sf3a1	94	80.774	ENSCAPG00000015414	SF3A1	98	80.774	Cavia_aperea
ENSMUSG00000002129	Sf3a1	100	98.108	ENSCPOG00000014589	SF3A1	100	98.108	Cavia_porcellus
ENSMUSG00000002129	Sf3a1	100	98.108	ENSCCAG00000032006	SF3A1	100	98.108	Cebus_capucinus
ENSMUSG00000002129	Sf3a1	100	98.487	ENSCATG00000029241	SF3A1	100	98.487	Cercocebus_atys
ENSMUSG00000002129	Sf3a1	100	97.856	ENSCLAG00000006508	SF3A1	100	97.856	Chinchilla_lanigera
ENSMUSG00000002129	Sf3a1	100	98.361	ENSCSAG00000009470	SF3A1	100	98.361	Chlorocebus_sabaeus
ENSMUSG00000002129	Sf3a1	61	98.165	ENSCHOG00000005201	SF3A1	69	98.165	Choloepus_hoffmanni
ENSMUSG00000002129	Sf3a1	100	90.554	ENSCPBG00000007595	SF3A1	100	90.680	Chrysemys_picta_bellii
ENSMUSG00000002129	Sf3a1	94	52.778	ENSCING00000008526	-	66	57.663	Ciona_intestinalis
ENSMUSG00000002129	Sf3a1	96	51.358	ENSCSAVG00000005608	-	90	65.179	Ciona_savignyi
ENSMUSG00000002129	Sf3a1	100	98.361	ENSCANG00000033564	SF3A1	100	98.361	Colobus_angolensis_palliatus
ENSMUSG00000002129	Sf3a1	100	98.739	ENSCGRG00001008933	Sf3a1	100	98.739	Cricetulus_griseus_chok1gshd
ENSMUSG00000002129	Sf3a1	100	98.739	ENSCGRG00000006127	Sf3a1	100	98.739	Cricetulus_griseus_crigri
ENSMUSG00000002129	Sf3a1	99	82.084	ENSCSEG00000010792	sf3a1	98	83.117	Cynoglossus_semilaevis
ENSMUSG00000002129	Sf3a1	99	82.576	ENSCVAG00000004560	sf3a1	98	83.506	Cyprinodon_variegatus
ENSMUSG00000002129	Sf3a1	96	83.833	ENSDARG00000041887	sf3a1	97	84.224	Danio_rerio
ENSMUSG00000002129	Sf3a1	100	97.736	ENSDNOG00000010629	SF3A1	100	97.736	Dasypus_novemcinctus
ENSMUSG00000002129	Sf3a1	100	98.108	ENSDORG00000005613	Sf3a1	100	98.108	Dipodomys_ordii
ENSMUSG00000002129	Sf3a1	79	61.495	FBgn0266917	Sf3a1	84	59.567	Drosophila_melanogaster
ENSMUSG00000002129	Sf3a1	84	96.407	ENSETEG00000017194	SF3A1	95	96.257	Echinops_telfairi
ENSMUSG00000002129	Sf3a1	97	66.504	ENSEBUG00000001285	sf3a1	77	67.341	Eptatretus_burgeri
ENSMUSG00000002129	Sf3a1	100	98.361	ENSEASG00005010254	SF3A1	100	98.361	Equus_asinus_asinus
ENSMUSG00000002129	Sf3a1	100	98.361	ENSECAG00000023962	SF3A1	100	98.361	Equus_caballus
ENSMUSG00000002129	Sf3a1	73	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSMUSG00000002129	Sf3a1	99	82.138	ENSELUG00000022578	sf3a1	97	83.748	Esox_lucius
ENSMUSG00000002129	Sf3a1	100	97.982	ENSFCAG00000011932	SF3A1	100	97.982	Felis_catus
ENSMUSG00000002129	Sf3a1	95	92.460	ENSFALG00000006944	SF3A1	98	91.774	Ficedula_albicollis
ENSMUSG00000002129	Sf3a1	100	98.108	ENSFDAG00000009560	SF3A1	100	98.108	Fukomys_damarensis
ENSMUSG00000002129	Sf3a1	99	82.955	ENSFHEG00000010866	sf3a1	98	84.456	Fundulus_heteroclitus
ENSMUSG00000002129	Sf3a1	99	80.531	ENSGMOG00000016024	sf3a1	97	81.070	Gadus_morhua
ENSMUSG00000002129	Sf3a1	95	93.519	ENSGALG00000007937	SF3A1	98	92.416	Gallus_gallus
ENSMUSG00000002129	Sf3a1	99	83.207	ENSGAFG00000009111	sf3a1	97	84.605	Gambusia_affinis
ENSMUSG00000002129	Sf3a1	99	82.554	ENSGACG00000011893	sf3a1	97	83.355	Gasterosteus_aculeatus
ENSMUSG00000002129	Sf3a1	96	90.539	ENSGAGG00000000762	SF3A1	99	90.670	Gopherus_agassizii
ENSMUSG00000002129	Sf3a1	100	98.108	ENSGGOG00000012631	SF3A1	100	98.108	Gorilla_gorilla
ENSMUSG00000002129	Sf3a1	99	84.411	ENSHBUG00000015795	sf3a1	99	84.942	Haplochromis_burtoni
ENSMUSG00000002129	Sf3a1	100	98.235	ENSHGLG00000007907	SF3A1	100	98.235	Heterocephalus_glaber_female
ENSMUSG00000002129	Sf3a1	100	98.235	ENSHGLG00100013799	SF3A1	100	98.235	Heterocephalus_glaber_male
ENSMUSG00000002129	Sf3a1	99	79.924	ENSHCOG00000015423	sf3a1	99	80.774	Hippocampus_comes
ENSMUSG00000002129	Sf3a1	96	82.031	ENSIPUG00000002470	sf3a1	98	82.422	Ictalurus_punctatus
ENSMUSG00000002129	Sf3a1	100	98.235	ENSSTOG00000013892	SF3A1	100	98.235	Ictidomys_tridecemlineatus
ENSMUSG00000002129	Sf3a1	100	98.237	ENSJJAG00000022566	Sf3a1	100	98.237	Jaculus_jaculus
ENSMUSG00000002129	Sf3a1	99	83.081	ENSKMAG00000002400	sf3a1	98	84.845	Kryptolebias_marmoratus
ENSMUSG00000002129	Sf3a1	99	82.576	ENSLBEG00000022974	sf3a1	98	83.182	Labrus_bergylta
ENSMUSG00000002129	Sf3a1	100	86.951	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSMUSG00000002129	Sf3a1	100	84.336	ENSLOCG00000008251	sf3a1	97	85.195	Lepisosteus_oculatus
ENSMUSG00000002129	Sf3a1	97	62.500	ENSLAFG00000026032	-	97	61.727	Loxodonta_africana
ENSMUSG00000002129	Sf3a1	100	97.856	ENSLAFG00000000448	SF3A1	100	97.856	Loxodonta_africana
ENSMUSG00000002129	Sf3a1	100	98.235	ENSMFAG00000031979	SF3A1	100	98.235	Macaca_fascicularis
ENSMUSG00000002129	Sf3a1	100	98.235	ENSMMUG00000005547	SF3A1	100	98.235	Macaca_mulatta
ENSMUSG00000002129	Sf3a1	100	98.108	ENSMNEG00000037229	SF3A1	100	98.108	Macaca_nemestrina
ENSMUSG00000002129	Sf3a1	100	98.361	ENSMLEG00000041908	SF3A1	100	98.361	Mandrillus_leucophaeus
ENSMUSG00000002129	Sf3a1	97	85.363	ENSMAMG00000006460	sf3a1	96	85.622	Mastacembelus_armatus
ENSMUSG00000002129	Sf3a1	99	84.411	ENSMZEG00005009633	sf3a1	99	84.942	Maylandia_zebra
ENSMUSG00000002129	Sf3a1	95	93.519	ENSMGAG00000001330	SF3A1	100	92.487	Meleagris_gallopavo
ENSMUSG00000002129	Sf3a1	92	95.355	ENSMAUG00000020317	Sf3a1	94	95.355	Mesocricetus_auratus
ENSMUSG00000002129	Sf3a1	100	97.982	ENSMICG00000010038	SF3A1	100	97.982	Microcebus_murinus
ENSMUSG00000002129	Sf3a1	100	98.739	ENSMOCG00000008438	Sf3a1	100	98.739	Microtus_ochrogaster
ENSMUSG00000002129	Sf3a1	99	81.911	ENSMMOG00000015588	sf3a1	98	81.759	Mola_mola
ENSMUSG00000002129	Sf3a1	100	96.847	ENSMODG00000009270	SF3A1	100	96.847	Monodelphis_domestica
ENSMUSG00000002129	Sf3a1	99	83.944	ENSMALG00000000148	sf3a1	99	85.695	Monopterus_albus
ENSMUSG00000002129	Sf3a1	100	100.000	MGP_CAROLIEiJ_G0016029	Sf3a1	100	100.000	Mus_caroli
ENSMUSG00000002129	Sf3a1	100	99.747	MGP_PahariEiJ_G0016862	Sf3a1	100	99.747	Mus_pahari
ENSMUSG00000002129	Sf3a1	100	100.000	MGP_SPRETEiJ_G0016870	Sf3a1	100	100.000	Mus_spretus
ENSMUSG00000002129	Sf3a1	100	97.982	ENSMPUG00000013144	SF3A1	100	97.982	Mustela_putorius_furo
ENSMUSG00000002129	Sf3a1	100	98.108	ENSMLUG00000002139	SF3A1	100	98.108	Myotis_lucifugus
ENSMUSG00000002129	Sf3a1	100	98.235	ENSNGAG00000016977	Sf3a1	100	98.235	Nannospalax_galili
ENSMUSG00000002129	Sf3a1	99	84.197	ENSNBRG00000016642	sf3a1	97	86.013	Neolamprologus_brichardi
ENSMUSG00000002129	Sf3a1	100	98.361	ENSNLEG00000003686	SF3A1	100	98.361	Nomascus_leucogenys
ENSMUSG00000002129	Sf3a1	94	87.097	ENSMEUG00000008741	SF3A1	100	86.974	Notamacropus_eugenii
ENSMUSG00000002129	Sf3a1	100	97.604	ENSOPRG00000016636	SF3A1	100	97.604	Ochotona_princeps
ENSMUSG00000002129	Sf3a1	100	98.235	ENSODEG00000002571	SF3A1	100	98.235	Octodon_degus
ENSMUSG00000002129	Sf3a1	99	84.051	ENSONIG00000010848	sf3a1	99	84.319	Oreochromis_niloticus
ENSMUSG00000002129	Sf3a1	100	97.856	ENSOCUG00000007633	SF3A1	100	97.856	Oryctolagus_cuniculus
ENSMUSG00000002129	Sf3a1	95	82.048	ENSORLG00000013050	sf3a1	98	83.356	Oryzias_latipes
ENSMUSG00000002129	Sf3a1	98	80.513	ENSORLG00020003236	sf3a1	97	81.534	Oryzias_latipes_hni
ENSMUSG00000002129	Sf3a1	99	82.071	ENSORLG00015017411	sf3a1	97	84.737	Oryzias_latipes_hsok
ENSMUSG00000002129	Sf3a1	99	82.675	ENSOMEG00000013362	sf3a1	99	83.097	Oryzias_melastigma
ENSMUSG00000002129	Sf3a1	100	97.982	ENSOGAG00000012931	SF3A1	100	97.982	Otolemur_garnettii
ENSMUSG00000002129	Sf3a1	100	96.343	ENSOARG00000006849	SF3A1	100	96.343	Ovis_aries
ENSMUSG00000002129	Sf3a1	100	97.100	ENSPPAG00000041790	SF3A1	100	97.100	Pan_paniscus
ENSMUSG00000002129	Sf3a1	100	97.982	ENSPPRG00000004391	SF3A1	100	97.982	Panthera_pardus
ENSMUSG00000002129	Sf3a1	97	98.187	ENSPTIG00000000844	SF3A1	100	98.187	Panthera_tigris_altaica
ENSMUSG00000002129	Sf3a1	100	98.108	ENSPTRG00000014240	SF3A1	100	98.108	Pan_troglodytes
ENSMUSG00000002129	Sf3a1	100	98.361	ENSPANG00000020772	SF3A1	100	98.361	Papio_anubis
ENSMUSG00000002129	Sf3a1	83	92.308	ENSPSIG00000012803	SF3A1	96	93.762	Pelodiscus_sinensis
ENSMUSG00000002129	Sf3a1	96	84.585	ENSPMGG00000023096	sf3a1	99	84.321	Periophthalmus_magnuspinnatus
ENSMUSG00000002129	Sf3a1	100	98.865	ENSPEMG00000009494	Sf3a1	100	98.865	Peromyscus_maniculatus_bairdii
ENSMUSG00000002129	Sf3a1	69	76.407	ENSPMAG00000007139	-	90	79.213	Petromyzon_marinus
ENSMUSG00000002129	Sf3a1	100	96.595	ENSPCIG00000022692	SF3A1	100	96.595	Phascolarctos_cinereus
ENSMUSG00000002129	Sf3a1	92	78.912	ENSPFOG00000016768	sf3a1	93	78.231	Poecilia_formosa
ENSMUSG00000002129	Sf3a1	99	82.323	ENSPLAG00000017268	sf3a1	97	84.868	Poecilia_latipinna
ENSMUSG00000002129	Sf3a1	96	85.392	ENSPMEG00000019811	sf3a1	98	84.488	Poecilia_mexicana
ENSMUSG00000002129	Sf3a1	99	82.449	ENSPREG00000010347	sf3a1	97	85.395	Poecilia_reticulata
ENSMUSG00000002129	Sf3a1	100	98.361	ENSPPYG00000011707	SF3A1	100	98.361	Pongo_abelii
ENSMUSG00000002129	Sf3a1	57	97.642	ENSPCAG00000003266	SF3A1	57	97.642	Procavia_capensis
ENSMUSG00000002129	Sf3a1	100	98.108	ENSPCOG00000026630	SF3A1	100	98.108	Propithecus_coquereli
ENSMUSG00000002129	Sf3a1	100	93.821	ENSPVAG00000017719	SF3A1	94	97.450	Pteropus_vampyrus
ENSMUSG00000002129	Sf3a1	99	84.411	ENSPNYG00000018706	sf3a1	99	84.942	Pundamilia_nyererei
ENSMUSG00000002129	Sf3a1	98	82.824	ENSPNAG00000003721	sf3a1	99	83.312	Pygocentrus_nattereri
ENSMUSG00000002129	Sf3a1	100	99.241	ENSRNOG00000005218	Sf3a1	100	99.241	Rattus_norvegicus
ENSMUSG00000002129	Sf3a1	100	98.235	ENSRBIG00000032167	SF3A1	100	98.235	Rhinopithecus_bieti
ENSMUSG00000002129	Sf3a1	100	98.235	ENSRROG00000044908	SF3A1	100	98.235	Rhinopithecus_roxellana
ENSMUSG00000002129	Sf3a1	97	94.057	ENSSBOG00000021960	SF3A1	100	98.375	Saimiri_boliviensis_boliviensis
ENSMUSG00000002129	Sf3a1	99	92.803	ENSSHAG00000003666	SF3A1	98	93.935	Sarcophilus_harrisii
ENSMUSG00000002129	Sf3a1	99	83.418	ENSSFOG00015004579	sf3a1	99	84.615	Scleropages_formosus
ENSMUSG00000002129	Sf3a1	99	81.692	ENSSMAG00000004275	sf3a1	98	82.987	Scophthalmus_maximus
ENSMUSG00000002129	Sf3a1	99	84.051	ENSSDUG00000022219	sf3a1	99	84.190	Seriola_dumerili
ENSMUSG00000002129	Sf3a1	99	84.051	ENSSLDG00000012642	sf3a1	99	84.190	Seriola_lalandi_dorsalis
ENSMUSG00000002129	Sf3a1	97	94.689	ENSSARG00000005960	SF3A1	100	94.689	Sorex_araneus
ENSMUSG00000002129	Sf3a1	96	91.958	ENSSPUG00000018863	SF3A1	100	91.294	Sphenodon_punctatus
ENSMUSG00000002129	Sf3a1	99	84.459	ENSSPAG00000011856	sf3a1	99	84.576	Stegastes_partitus
ENSMUSG00000002129	Sf3a1	100	98.108	ENSSSCG00000010002	SF3A1	100	98.108	Sus_scrofa
ENSMUSG00000002129	Sf3a1	95	93.404	ENSTGUG00000010547	SF3A1	99	92.866	Taeniopygia_guttata
ENSMUSG00000002129	Sf3a1	99	81.313	ENSTRUG00000006118	sf3a1	97	82.368	Takifugu_rubripes
ENSMUSG00000002129	Sf3a1	64	81.041	ENSTNIG00000005713	sf3a1	81	84.821	Tetraodon_nigroviridis
ENSMUSG00000002129	Sf3a1	98	90.734	ENSTBEG00000012771	SF3A1	100	90.794	Tupaia_belangeri
ENSMUSG00000002129	Sf3a1	100	97.859	ENSTTRG00000001535	SF3A1	100	97.859	Tursiops_truncatus
ENSMUSG00000002129	Sf3a1	99	97.078	ENSUAMG00000006750	SF3A1	99	97.078	Ursus_americanus
ENSMUSG00000002129	Sf3a1	99	96.947	ENSUMAG00000016665	SF3A1	98	98.189	Ursus_maritimus
ENSMUSG00000002129	Sf3a1	100	97.982	ENSVVUG00000003075	SF3A1	100	97.982	Vulpes_vulpes
ENSMUSG00000002129	Sf3a1	100	85.445	ENSXETG00000016144	sf3a1	100	85.194	Xenopus_tropicalis
ENSMUSG00000002129	Sf3a1	99	82.955	ENSXCOG00000015653	sf3a1	97	84.737	Xiphophorus_couchianus
ENSMUSG00000002129	Sf3a1	99	83.081	ENSXMAG00000002753	sf3a1	97	84.868	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005684	U2-type spliceosomal complex	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:1903241	U2-type prespliceosome assembly	-	ISO	Process