EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000002455 (Gene tree)
Gene ID: 68879
Gene Symbol: Prpf6
Alias: 1190003A07Rik|2610031L17Rik|ANT-1|U5-102K
Full Name: pre-mRNA splicing factor 6
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 63793 bases
Position: chr2:181591868-181655660
Accession: 1922946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000002529	PRP1_N	PF06424.12	3.9e-57	1	1
ENSMUSP00000121340	PRP1_N	PF06424.12	3.9e-57	1	1
ENSMUSP00000117711	PRP1_N	PF06424.12	1.2e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139955	-	2446	-	-	- (aa)	-	-
ENSMUST00000002529	-	3054	-	ENSMUSP00000002529	941 (aa)	-	Q91YR7
ENSMUST00000136481	-	3048	-	ENSMUSP00000121340	941 (aa)	-	Q91YR7
ENSMUST00000132714	-	359	-	ENSMUSP00000117711	54 (aa)	-	B7ZCS1

Gene Model

Click here to download ENSMUSG00000002455's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002455's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000002455	Prpf6	100	100.000	ENSG00000101161	PRPF6	100	98.300	Homo_sapiens
ENSMUSG00000002455	Prpf6	100	96.296	ENSAPOG00000010395	prpf6	96	93.624	Acanthochromis_polyacanthus
ENSMUSG00000002455	Prpf6	100	98.148	ENSAMEG00000001916	PRPF6	99	97.452	Ailuropoda_melanoleuca
ENSMUSG00000002455	Prpf6	100	92.880	ENSACIG00000019862	prpf6	96	93.305	Amphilophus_citrinellus
ENSMUSG00000002455	Prpf6	100	96.296	ENSAOCG00000012988	prpf6	96	93.518	Amphiprion_ocellaris
ENSMUSG00000002455	Prpf6	100	96.296	ENSAPEG00000008301	prpf6	100	86.929	Amphiprion_percula
ENSMUSG00000002455	Prpf6	100	92.561	ENSATEG00000005581	prpf6	96	92.986	Anabas_testudineus
ENSMUSG00000002455	Prpf6	100	100.000	ENSACAG00000006464	PRPF6	95	98.087	Anolis_carolinensis
ENSMUSG00000002455	Prpf6	100	100.000	ENSANAG00000012661	PRPF6	100	98.940	Aotus_nancymaae
ENSMUSG00000002455	Prpf6	100	96.296	ENSACLG00000025875	prpf6	96	93.199	Astatotilapia_calliptera
ENSMUSG00000002455	Prpf6	100	96.296	ENSAMXG00000001929	prpf6	96	93.723	Astyanax_mexicanus
ENSMUSG00000002455	Prpf6	100	98.406	ENSBTAG00000011656	PRPF6	100	98.406	Bos_taurus
ENSMUSG00000002455	Prpf6	100	100.000	ENSCJAG00000010616	PRPF6	100	98.406	Callithrix_jacchus
ENSMUSG00000002455	Prpf6	100	98.725	ENSCAFG00000013165	PRPF6	100	98.725	Canis_familiaris
ENSMUSG00000002455	Prpf6	100	98.725	ENSCAFG00020002050	PRPF6	100	98.725	Canis_lupus_dingo
ENSMUSG00000002455	Prpf6	100	98.406	ENSCHIG00000018187	PRPF6	100	98.406	Capra_hircus
ENSMUSG00000002455	Prpf6	100	100.000	ENSTSYG00000007814	PRPF6	100	99.044	Carlito_syrichta
ENSMUSG00000002455	Prpf6	100	100.000	ENSCAPG00000015077	PRPF6	100	98.364	Cavia_aperea
ENSMUSG00000002455	Prpf6	100	100.000	ENSCPOG00000007518	PRPF6	100	99.681	Cavia_porcellus
ENSMUSG00000002455	Prpf6	100	100.000	ENSCCAG00000024564	PRPF6	100	95.218	Cebus_capucinus
ENSMUSG00000002455	Prpf6	100	100.000	ENSCATG00000037473	PRPF6	100	98.193	Cercocebus_atys
ENSMUSG00000002455	Prpf6	100	100.000	ENSCLAG00000003854	PRPF6	100	95.643	Chinchilla_lanigera
ENSMUSG00000002455	Prpf6	100	100.000	ENSCSAG00000016742	PRPF6	100	93.136	Chlorocebus_sabaeus
ENSMUSG00000002455	Prpf6	85	81.301	ENSCHOG00000003315	-	100	81.301	Choloepus_hoffmanni
ENSMUSG00000002455	Prpf6	100	98.193	ENSCPBG00000013964	PRPF6	96	98.193	Chrysemys_picta_bellii
ENSMUSG00000002455	Prpf6	99	73.573	ENSCING00000008817	-	99	73.573	Ciona_intestinalis
ENSMUSG00000002455	Prpf6	100	100.000	ENSCANG00000038230	PRPF6	100	98.193	Colobus_angolensis_palliatus
ENSMUSG00000002455	Prpf6	100	100.000	ENSCGRG00001022666	Prpf6	100	99.787	Cricetulus_griseus_chok1gshd
ENSMUSG00000002455	Prpf6	100	96.296	ENSCSEG00000018561	prpf6	100	87.779	Cynoglossus_semilaevis
ENSMUSG00000002455	Prpf6	100	96.296	ENSCVAG00000010550	prpf6	96	93.518	Cyprinodon_variegatus
ENSMUSG00000002455	Prpf6	100	92.667	ENSDARG00000091367	prpf6	99	93.092	Danio_rerio
ENSMUSG00000002455	Prpf6	100	98.148	ENSDNOG00000040544	PRPF6	100	97.662	Dasypus_novemcinctus
ENSMUSG00000002455	Prpf6	91	98.364	ENSDORG00000005406	Prpf6	100	98.364	Dipodomys_ordii
ENSMUSG00000002455	Prpf6	99	72.013	FBgn0036828	CG6841	98	72.318	Drosophila_melanogaster
ENSMUSG00000002455	Prpf6	100	100.000	ENSETEG00000004447	PRPF6	85	95.760	Echinops_telfairi
ENSMUSG00000002455	Prpf6	99	87.169	ENSEBUG00000008835	prpf6	99	87.169	Eptatretus_burgeri
ENSMUSG00000002455	Prpf6	100	98.512	ENSEASG00005023115	PRPF6	100	98.512	Equus_asinus_asinus
ENSMUSG00000002455	Prpf6	100	98.148	ENSECAG00000013983	PRPF6	100	94.261	Equus_caballus
ENSMUSG00000002455	Prpf6	90	100.000	ENSEEUG00000000180	PRPF6	82	100.000	Erinaceus_europaeus
ENSMUSG00000002455	Prpf6	100	92.593	ENSELUG00000001945	prpf6	93	91.605	Esox_lucius
ENSMUSG00000002455	Prpf6	100	98.512	ENSFCAG00000001183	PRPF6	100	98.512	Felis_catus
ENSMUSG00000002455	Prpf6	100	98.148	ENSFALG00000010326	-	97	98.087	Ficedula_albicollis
ENSMUSG00000002455	Prpf6	100	90.436	ENSFALG00000006046	-	97	90.436	Ficedula_albicollis
ENSMUSG00000002455	Prpf6	100	100.000	ENSFDAG00000006451	PRPF6	100	99.660	Fukomys_damarensis
ENSMUSG00000002455	Prpf6	100	94.444	ENSFHEG00000000560	prpf6	96	93.730	Fundulus_heteroclitus
ENSMUSG00000002455	Prpf6	100	89.535	ENSGMOG00000015622	prpf6	99	89.535	Gadus_morhua
ENSMUSG00000002455	Prpf6	100	98.148	ENSGALG00000006001	PRPF6	100	98.087	Gallus_gallus
ENSMUSG00000002455	Prpf6	100	96.296	ENSGAFG00000021109	prpf6	96	88.842	Gambusia_affinis
ENSMUSG00000002455	Prpf6	100	91.605	ENSGACG00000002576	prpf6	99	91.605	Gasterosteus_aculeatus
ENSMUSG00000002455	Prpf6	100	98.148	ENSGAGG00000008653	PRPF6	96	98.087	Gopherus_agassizii
ENSMUSG00000002455	Prpf6	100	100.000	ENSGGOG00000016876	PRPF6	100	98.300	Gorilla_gorilla
ENSMUSG00000002455	Prpf6	100	96.296	ENSHBUG00000004496	prpf6	96	93.199	Haplochromis_burtoni
ENSMUSG00000002455	Prpf6	100	100.000	ENSHGLG00000009222	PRPF6	100	99.469	Heterocephalus_glaber_female
ENSMUSG00000002455	Prpf6	100	100.000	ENSHGLG00100016600	PRPF6	100	99.455	Heterocephalus_glaber_male
ENSMUSG00000002455	Prpf6	100	96.296	ENSHCOG00000011513	prpf6	96	92.030	Hippocampus_comes
ENSMUSG00000002455	Prpf6	100	93.836	ENSIPUG00000004912	prpf6	96	93.836	Ictalurus_punctatus
ENSMUSG00000002455	Prpf6	100	100.000	ENSSTOG00000002922	PRPF6	100	96.709	Ictidomys_tridecemlineatus
ENSMUSG00000002455	Prpf6	100	100.000	ENSJJAG00000000836	Prpf6	100	99.469	Jaculus_jaculus
ENSMUSG00000002455	Prpf6	100	92.561	ENSKMAG00000017800	prpf6	96	92.986	Kryptolebias_marmoratus
ENSMUSG00000002455	Prpf6	100	92.593	ENSLBEG00000012582	prpf6	96	92.242	Labrus_bergylta
ENSMUSG00000002455	Prpf6	100	98.148	ENSLOCG00000004827	prpf6	96	93.943	Lepisosteus_oculatus
ENSMUSG00000002455	Prpf6	100	100.000	ENSLAFG00000005272	PRPF6	100	97.981	Loxodonta_africana
ENSMUSG00000002455	Prpf6	100	100.000	ENSMFAG00000037542	PRPF6	100	98.193	Macaca_fascicularis
ENSMUSG00000002455	Prpf6	100	100.000	ENSMMUG00000015558	PRPF6	98	99.653	Macaca_mulatta
ENSMUSG00000002455	Prpf6	100	100.000	ENSMNEG00000045555	PRPF6	100	83.898	Macaca_nemestrina
ENSMUSG00000002455	Prpf6	100	96.296	ENSMAMG00000010718	prpf6	96	93.305	Mastacembelus_armatus
ENSMUSG00000002455	Prpf6	100	96.296	ENSMZEG00005026539	prpf6	100	92.744	Maylandia_zebra
ENSMUSG00000002455	Prpf6	100	96.296	ENSMZEG00005015261	-	99	92.675	Maylandia_zebra
ENSMUSG00000002455	Prpf6	100	98.148	ENSMGAG00000006634	PRPF6	100	98.037	Meleagris_gallopavo
ENSMUSG00000002455	Prpf6	100	100.000	ENSMAUG00000013969	Prpf6	100	99.894	Mesocricetus_auratus
ENSMUSG00000002455	Prpf6	87	98.540	ENSMICG00000017793	PRPF6	99	98.540	Microcebus_murinus
ENSMUSG00000002455	Prpf6	100	100.000	ENSMOCG00000001701	Prpf6	100	99.787	Microtus_ochrogaster
ENSMUSG00000002455	Prpf6	100	91.923	ENSMMOG00000020419	prpf6	100	92.349	Mola_mola
ENSMUSG00000002455	Prpf6	100	100.000	ENSMODG00000017051	PRPF6	99	98.767	Monodelphis_domestica
ENSMUSG00000002455	Prpf6	100	92.593	ENSMALG00000000089	prpf6	100	93.018	Monopterus_albus
ENSMUSG00000002455	Prpf6	100	100.000	MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	Mus_caroli
ENSMUSG00000002455	Prpf6	100	100.000	MGP_PahariEiJ_G0026262	Prpf6	100	100.000	Mus_pahari
ENSMUSG00000002455	Prpf6	100	100.000	MGP_SPRETEiJ_G0025741	Prpf6	100	100.000	Mus_spretus
ENSMUSG00000002455	Prpf6	100	98.148	ENSMPUG00000008673	PRPF6	99	97.974	Mustela_putorius_furo
ENSMUSG00000002455	Prpf6	100	100.000	ENSNGAG00000003365	Prpf6	100	99.787	Nannospalax_galili
ENSMUSG00000002455	Prpf6	100	96.296	ENSNBRG00000015025	prpf6	96	93.305	Neolamprologus_brichardi
ENSMUSG00000002455	Prpf6	100	100.000	ENSNLEG00000010208	PRPF6	100	98.193	Nomascus_leucogenys
ENSMUSG00000002455	Prpf6	100	88.735	ENSMEUG00000009824	-	90	88.735	Notamacropus_eugenii
ENSMUSG00000002455	Prpf6	100	100.000	ENSODEG00000004841	PRPF6	100	93.624	Octodon_degus
ENSMUSG00000002455	Prpf6	100	96.296	ENSONIG00000017406	prpf6	96	93.199	Oreochromis_niloticus
ENSMUSG00000002455	Prpf6	100	100.000	ENSOANG00000004920	PRPF6	100	98.406	Ornithorhynchus_anatinus
ENSMUSG00000002455	Prpf6	100	100.000	ENSOCUG00000014151	PRPF6	100	97.210	Oryctolagus_cuniculus
ENSMUSG00000002455	Prpf6	100	92.561	ENSORLG00000009592	prpf6	96	92.561	Oryzias_latipes
ENSMUSG00000002455	Prpf6	100	92.667	ENSORLG00020001458	prpf6	96	92.667	Oryzias_latipes_hni
ENSMUSG00000002455	Prpf6	100	92.667	ENSORLG00015018762	prpf6	96	92.667	Oryzias_latipes_hsok
ENSMUSG00000002455	Prpf6	100	96.296	ENSOMEG00000012174	prpf6	96	92.986	Oryzias_melastigma
ENSMUSG00000002455	Prpf6	100	100.000	ENSOGAG00000007573	PRPF6	100	91.401	Otolemur_garnettii
ENSMUSG00000002455	Prpf6	100	98.148	ENSOARG00000008776	PRPF6	99	97.981	Ovis_aries
ENSMUSG00000002455	Prpf6	100	100.000	ENSPPAG00000008686	PRPF6	100	98.300	Pan_paniscus
ENSMUSG00000002455	Prpf6	100	98.512	ENSPPRG00000008497	PRPF6	100	98.512	Panthera_pardus
ENSMUSG00000002455	Prpf6	100	98.148	ENSPTIG00000011184	PRPF6	97	98.473	Panthera_tigris_altaica
ENSMUSG00000002455	Prpf6	100	100.000	ENSPTRG00000013765	PRPF6	100	98.300	Pan_troglodytes
ENSMUSG00000002455	Prpf6	100	100.000	ENSPANG00000024135	PRPF6	100	97.662	Papio_anubis
ENSMUSG00000002455	Prpf6	100	98.148	ENSPKIG00000005627	prpf6	99	94.793	Paramormyrops_kingsleyae
ENSMUSG00000002455	Prpf6	100	100.000	ENSPSIG00000007717	PRPF6	100	98.299	Pelodiscus_sinensis
ENSMUSG00000002455	Prpf6	100	90.340	ENSPMGG00000008925	prpf6	96	90.552	Periophthalmus_magnuspinnatus
ENSMUSG00000002455	Prpf6	100	100.000	ENSPEMG00000016036	Prpf6	100	99.787	Peromyscus_maniculatus_bairdii
ENSMUSG00000002455	Prpf6	99	88.523	ENSPMAG00000006144	prpf6	99	88.523	Petromyzon_marinus
ENSMUSG00000002455	Prpf6	100	100.000	ENSPCIG00000017909	PRPF6	100	98.512	Phascolarctos_cinereus
ENSMUSG00000002455	Prpf6	100	96.296	ENSPFOG00000006431	prpf6	96	93.730	Poecilia_formosa
ENSMUSG00000002455	Prpf6	100	96.296	ENSPLAG00000005974	prpf6	96	93.624	Poecilia_latipinna
ENSMUSG00000002455	Prpf6	100	96.296	ENSPMEG00000009977	prpf6	96	93.836	Poecilia_mexicana
ENSMUSG00000002455	Prpf6	100	96.296	ENSPREG00000017993	prpf6	92	93.730	Poecilia_reticulata
ENSMUSG00000002455	Prpf6	100	100.000	ENSPPYG00000011256	PRPF6	100	97.768	Pongo_abelii
ENSMUSG00000002455	Prpf6	100	100.000	ENSPCAG00000006536	PRPF6	88	99.673	Procavia_capensis
ENSMUSG00000002455	Prpf6	100	98.512	ENSPCOG00000016881	PRPF6	100	98.512	Propithecus_coquereli
ENSMUSG00000002455	Prpf6	100	98.148	ENSPVAG00000014316	PRPF6	100	92.667	Pteropus_vampyrus
ENSMUSG00000002455	Prpf6	100	96.296	ENSPNYG00000001939	prpf6	96	81.615	Pundamilia_nyererei
ENSMUSG00000002455	Prpf6	100	93.518	ENSPNAG00000015606	prpf6	96	93.943	Pygocentrus_nattereri
ENSMUSG00000002455	Prpf6	100	100.000	ENSRNOG00000051498	Prpf6	100	99.787	Rattus_norvegicus
ENSMUSG00000002455	Prpf6	100	100.000	ENSRBIG00000043613	PRPF6	100	98.193	Rhinopithecus_bieti
ENSMUSG00000002455	Prpf6	100	100.000	ENSRROG00000040969	PRPF6	98	98.270	Rhinopithecus_roxellana
ENSMUSG00000002455	Prpf6	100	100.000	ENSSBOG00000020632	PRPF6	93	93.772	Saimiri_boliviensis_boliviensis
ENSMUSG00000002455	Prpf6	100	100.000	ENSSHAG00000016810	PRPF6	100	98.512	Sarcophilus_harrisii
ENSMUSG00000002455	Prpf6	100	98.148	ENSSFOG00015020859	prpf6	100	95.059	Scleropages_formosus
ENSMUSG00000002455	Prpf6	100	92.136	ENSSMAG00000008112	prpf6	96	92.136	Scophthalmus_maximus
ENSMUSG00000002455	Prpf6	100	96.296	ENSSDUG00000016142	prpf6	96	93.199	Seriola_dumerili
ENSMUSG00000002455	Prpf6	100	96.296	ENSSLDG00000025283	prpf6	100	89.692	Seriola_lalandi_dorsalis
ENSMUSG00000002455	Prpf6	100	98.148	ENSSPUG00000018260	PRPF6	100	96.825	Sphenodon_punctatus
ENSMUSG00000002455	Prpf6	100	96.296	ENSSPAG00000015850	prpf6	96	93.199	Stegastes_partitus
ENSMUSG00000002455	Prpf6	100	98.406	ENSSSCG00000029119	PRPF6	100	98.299	Sus_scrofa
ENSMUSG00000002455	Prpf6	100	98.193	ENSTGUG00000007221	PRPF6	99	98.193	Taeniopygia_guttata
ENSMUSG00000002455	Prpf6	100	91.711	ENSTRUG00000002920	prpf6	96	92.136	Takifugu_rubripes
ENSMUSG00000002455	Prpf6	100	85.412	ENSTNIG00000017873	prpf6	100	85.835	Tetraodon_nigroviridis
ENSMUSG00000002455	Prpf6	100	100.000	ENSTBEG00000005348	PRPF6	85	98.895	Tupaia_belangeri
ENSMUSG00000002455	Prpf6	100	98.148	ENSTTRG00000013068	PRPF6	100	97.875	Tursiops_truncatus
ENSMUSG00000002455	Prpf6	100	98.148	ENSUMAG00000021631	PRPF6	98	96.957	Ursus_maritimus
ENSMUSG00000002455	Prpf6	100	98.725	ENSVVUG00000014948	PRPF6	100	98.725	Vulpes_vulpes
ENSMUSG00000002455	Prpf6	100	98.148	ENSXETG00000012054	prpf6	97	96.493	Xenopus_tropicalis
ENSMUSG00000002455	Prpf6	100	96.296	ENSXCOG00000008082	prpf6	96	93.836	Xiphophorus_couchianus
ENSMUSG00000002455	Prpf6	100	96.296	ENSXMAG00000015581	prpf6	96	93.836	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	21873635.	IBA	Process
GO:0000244	spliceosomal tri-snRNP complex assembly	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003713	transcription coactivator activity	16414017.	ISO	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	16414017.	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005682	U5 snRNP	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006403	RNA localization	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	16414017.	ISO	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0050681	androgen receptor binding	16414017.	ISO	Function
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component