EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000002477 (Gene tree)
Gene ID
20641
Gene Symbol
Snrpd1
Alias
SMD1
Full Name
small nuclear ribonucleoprotein D1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
24305 bases
Position
chr18:10617775-10642079
Accession
98344
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000002551LSMPF01423.221.5e-1811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000234207-439-ENSMUSP0000015736078 (aa)-UPI0000201AB3
ENSMUST00000234077-578--- (aa)--
ENSMUST00000234728-439--- (aa)--
ENSMUST00000002551-858-ENSMUSP00000002551119 (aa)-P62315
ENSMUST00000235020-670-ENSMUSP0000015711998 (aa)-UPI0000195124
Gene Model
Click here to download ENSMUSG00000002477's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
mmu05322Systemic lupus erythematosusKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002477's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000002477Snrpd1100100.000ENSG00000167088SNRPD1100100.000Homo_sapiens
ENSMUSG00000002477Snrpd110096.639ENSAPOG00000019446snrpd16596.639Acanthochromis_polyacanthus
ENSMUSG00000002477Snrpd19898.291ENSAMEG00000002576SNRPD110098.291Ailuropoda_melanoleuca
ENSMUSG00000002477Snrpd19496.429ENSACIG00000011263snrpd110096.429Amphilophus_citrinellus
ENSMUSG00000002477Snrpd110096.639ENSAOCG00000007406snrpd110096.639Amphiprion_ocellaris
ENSMUSG00000002477Snrpd110092.437ENSAPEG00000014961snrpd110092.437Amphiprion_percula
ENSMUSG00000002477Snrpd19496.429ENSAPEG00000012539SNRPD110096.429Amphiprion_percula
ENSMUSG00000002477Snrpd110096.639ENSATEG00000014399snrpd110096.639Anabas_testudineus
ENSMUSG00000002477Snrpd197100.000ENSAPLG00000012256SNRPD197100.000Anas_platyrhynchos
ENSMUSG00000002477Snrpd1100100.000ENSACAG00000006364SNRPD1100100.000Anolis_carolinensis
ENSMUSG00000002477Snrpd1100100.000ENSANAG00000025641SNRPD1100100.000Aotus_nancymaae
ENSMUSG00000002477Snrpd19496.429ENSACLG00000017406snrpd110096.429Astatotilapia_calliptera
ENSMUSG00000002477Snrpd110097.479ENSAMXG00000004589snrpd110097.479Astyanax_mexicanus
ENSMUSG00000002477Snrpd1100100.000ENSBTAG00000008292SNRPD1100100.000Bos_taurus
ENSMUSG00000002477Snrpd17994.681ENSBTAG00000055316-8194.681Bos_taurus
ENSMUSG00000002477Snrpd19496.429ENSBTAG00000047266-9496.429Bos_taurus
ENSMUSG00000002477Snrpd19796.522ENSBTAG00000012376-8696.522Bos_taurus
ENSMUSG00000002477Snrpd17480.682WBGene00004916snr-37676.042Caenorhabditis_elegans
ENSMUSG00000002477Snrpd1100100.000ENSCJAG00000042955SNRPD1100100.000Callithrix_jacchus
ENSMUSG00000002477Snrpd1100100.000ENSCAFG00000018247SNRPD1100100.000Canis_familiaris
ENSMUSG00000002477Snrpd180100.000ENSCAFG00020015914SNRPD174100.000Canis_lupus_dingo
ENSMUSG00000002477Snrpd110097.479ENSCHIG00000005557SNRPD110097.479Capra_hircus
ENSMUSG00000002477Snrpd1100100.000ENSTSYG00000030028SNRPD1100100.000Carlito_syrichta
ENSMUSG00000002477Snrpd19799.130ENSCAPG00000008103SNRPD19999.130Cavia_aperea
ENSMUSG00000002477Snrpd1100100.000ENSCPOG00000004679SNRPD1100100.000Cavia_porcellus
ENSMUSG00000002477Snrpd1100100.000ENSCCAG00000032658SNRPD1100100.000Cebus_capucinus
ENSMUSG00000002477Snrpd110096.639ENSCCAG00000016652-10096.639Cebus_capucinus
ENSMUSG00000002477Snrpd110099.160ENSCCAG00000020611-10099.160Cebus_capucinus
ENSMUSG00000002477Snrpd18195.833ENSCCAG00000005390-8195.833Cebus_capucinus
ENSMUSG00000002477Snrpd1100100.000ENSCATG00000039978SNRPD1100100.000Cercocebus_atys
ENSMUSG00000002477Snrpd1100100.000ENSCLAG00000008691SNRPD1100100.000Chinchilla_lanigera
ENSMUSG00000002477Snrpd1100100.000ENSCSAG00000017654SNRPD1100100.000Chlorocebus_sabaeus
ENSMUSG00000002477Snrpd1100100.000ENSCPBG00000023143SNRPD1100100.000Chrysemys_picta_bellii
ENSMUSG00000002477Snrpd17287.209ENSCING00000024100-6987.209Ciona_intestinalis
ENSMUSG00000002477Snrpd17385.057ENSCSAVG00000004578-7085.057Ciona_savignyi
ENSMUSG00000002477Snrpd18175.000ENSCGRG00001009945-8575.000Cricetulus_griseus_chok1gshd
ENSMUSG00000002477Snrpd1100100.000ENSCGRG00001021055-100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000002477Snrpd18175.000ENSCGRG00000006224-8575.000Cricetulus_griseus_crigri
ENSMUSG00000002477Snrpd1100100.000ENSCGRG00000000490-100100.000Cricetulus_griseus_crigri
ENSMUSG00000002477Snrpd18094.737ENSCSEG00000018141snrpd18194.792Cynoglossus_semilaevis
ENSMUSG00000002477Snrpd110096.639ENSCVAG00000000534snrpd110096.639Cyprinodon_variegatus
ENSMUSG00000002477Snrpd110097.479ENSDARG00000011648snrpd110097.479Danio_rerio
ENSMUSG00000002477Snrpd1100100.000ENSDNOG00000040310SNRPD1100100.000Dasypus_novemcinctus
ENSMUSG00000002477Snrpd1100100.000ENSDORG00000008349Snrpd1100100.000Dipodomys_ordii
ENSMUSG00000002477Snrpd17982.979FBgn0261933SmD17682.979Drosophila_melanogaster
ENSMUSG00000002477Snrpd174100.000ENSETEG00000011689SNRPD174100.000Echinops_telfairi
ENSMUSG00000002477Snrpd19492.857ENSEBUG00000003170snrpd19492.857Eptatretus_burgeri
ENSMUSG00000002477Snrpd194100.000ENSEASG00005002433SNRPD1100100.000Equus_asinus_asinus
ENSMUSG00000002477Snrpd194100.000ENSECAG00000014373SNRPD1100100.000Equus_caballus
ENSMUSG00000002477Snrpd175100.000ENSEEUG00000004987SNRPD1100100.000Erinaceus_europaeus
ENSMUSG00000002477Snrpd19385.586ENSELUG00000000088snrpd17995.745Esox_lucius
ENSMUSG00000002477Snrpd1100100.000ENSFCAG00000012352SNRPD1100100.000Felis_catus
ENSMUSG00000002477Snrpd194100.000ENSFALG00000002646SNRPD1100100.000Ficedula_albicollis
ENSMUSG00000002477Snrpd110097.479ENSGMOG00000015607snrpd110097.479Gadus_morhua
ENSMUSG00000002477Snrpd1100100.000ENSGALG00000041334SNRPD1100100.000Gallus_gallus
ENSMUSG00000002477Snrpd110096.639ENSGAFG00000011171snrpd110096.639Gambusia_affinis
ENSMUSG00000002477Snrpd110097.479ENSGACG00000005201SNRPD110097.479Gasterosteus_aculeatus
ENSMUSG00000002477Snrpd1100100.000ENSGAGG00000011197SNRPD1100100.000Gopherus_agassizii
ENSMUSG00000002477Snrpd18194.792ENSGGOG00000026706-8094.792Gorilla_gorilla
ENSMUSG00000002477Snrpd1100100.000ENSGGOG00000041053SNRPD1100100.000Gorilla_gorilla
ENSMUSG00000002477Snrpd110096.639ENSHBUG00000003236snrpd110096.639Haplochromis_burtoni
ENSMUSG00000002477Snrpd1100100.000ENSHGLG00000007152SNRPD1100100.000Heterocephalus_glaber_female
ENSMUSG00000002477Snrpd1100100.000ENSHGLG00100008618SNRPD1100100.000Heterocephalus_glaber_male
ENSMUSG00000002477Snrpd110096.639ENSIPUG00000003576snrpd110096.639Ictalurus_punctatus
ENSMUSG00000002477Snrpd1100100.000ENSSTOG00000000485SNRPD1100100.000Ictidomys_tridecemlineatus
ENSMUSG00000002477Snrpd1100100.000ENSJJAG00000017698Snrpd1100100.000Jaculus_jaculus
ENSMUSG00000002477Snrpd110096.639ENSKMAG00000005987snrpd110096.639Kryptolebias_marmoratus
ENSMUSG00000002477Snrpd110096.639ENSLBEG00000003327snrpd110096.639Labrus_bergylta
ENSMUSG00000002477Snrpd1100100.000ENSLACG00000001955SNRPD1100100.000Latimeria_chalumnae
ENSMUSG00000002477Snrpd19897.436ENSLOCG00000002003snrpd110097.436Lepisosteus_oculatus
ENSMUSG00000002477Snrpd19998.305ENSLAFG00000005819SNRPD110098.305Loxodonta_africana
ENSMUSG00000002477Snrpd1100100.000ENSMFAG00000042080SNRPD1100100.000Macaca_fascicularis
ENSMUSG00000002477Snrpd196100.000ENSMMUG00000003992SNRPD197100.000Macaca_mulatta
ENSMUSG00000002477Snrpd1100100.000ENSMNEG00000041296SNRPD1100100.000Macaca_nemestrina
ENSMUSG00000002477Snrpd1100100.000ENSMLEG00000028659SNRPD1100100.000Mandrillus_leucophaeus
ENSMUSG00000002477Snrpd110096.639ENSMAMG00000012971snrpd110096.639Mastacembelus_armatus
ENSMUSG00000002477Snrpd110096.639ENSMZEG00005004685snrpd110096.639Maylandia_zebra
ENSMUSG00000002477Snrpd197100.000ENSMGAG00000011598SNRPD195100.000Meleagris_gallopavo
ENSMUSG00000002477Snrpd18183.333ENSMAUG00000016502-8683.333Mesocricetus_auratus
ENSMUSG00000002477Snrpd18294.845ENSMAUG00000006829-6294.845Mesocricetus_auratus
ENSMUSG00000002477Snrpd18183.333ENSMAUG00000016467-8683.333Mesocricetus_auratus
ENSMUSG00000002477Snrpd1100100.000ENSMICG00000044066SNRPD1100100.000Microcebus_murinus
ENSMUSG00000002477Snrpd1100100.000ENSMOCG00000017367Snrpd1100100.000Microtus_ochrogaster
ENSMUSG00000002477Snrpd110096.639ENSMMOG00000019089snrpd110096.639Mola_mola
ENSMUSG00000002477Snrpd1100100.000ENSMODG00000021487SNRPD1100100.000Monodelphis_domestica
ENSMUSG00000002477Snrpd110096.639ENSMALG00000014459snrpd110096.639Monopterus_albus
ENSMUSG00000002477Snrpd1100100.000MGP_CAROLIEiJ_G0021994Snrpd1100100.000Mus_caroli
ENSMUSG00000002477Snrpd1100100.000MGP_PahariEiJ_G0018731Snrpd1100100.000Mus_pahari
ENSMUSG00000002477Snrpd1100100.000MGP_SPRETEiJ_G0022910Snrpd1100100.000Mus_spretus
ENSMUSG00000002477Snrpd19898.291ENSMPUG00000005567-10098.291Mustela_putorius_furo
ENSMUSG00000002477Snrpd110099.160ENSMPUG00000020041-10099.160Mustela_putorius_furo
ENSMUSG00000002477Snrpd19797.414ENSMLUG00000009124SNRPD19097.414Myotis_lucifugus
ENSMUSG00000002477Snrpd1100100.000ENSNGAG00000023946Snrpd1100100.000Nannospalax_galili
ENSMUSG00000002477Snrpd17995.745ENSNBRG00000012119snrpd17895.745Neolamprologus_brichardi
ENSMUSG00000002477Snrpd110097.479ENSNLEG00000031430SNRPD110097.479Nomascus_leucogenys
ENSMUSG00000002477Snrpd1100100.000ENSODEG00000005764SNRPD1100100.000Octodon_degus
ENSMUSG00000002477Snrpd110096.639ENSONIG00000002486snrpd110096.639Oreochromis_niloticus
ENSMUSG00000002477Snrpd18288.776ENSOANG00000004638-8288.776Ornithorhynchus_anatinus
ENSMUSG00000002477Snrpd110099.160ENSOCUG00000014399-10099.160Oryctolagus_cuniculus
ENSMUSG00000002477Snrpd19898.291ENSOCUG00000023761-10098.291Oryctolagus_cuniculus
ENSMUSG00000002477Snrpd19496.429ENSORLG00000012516snrpd110096.429Oryzias_latipes
ENSMUSG00000002477Snrpd110096.639ENSORLG00020005743snrpd110096.639Oryzias_latipes_hni
ENSMUSG00000002477Snrpd110096.639ENSORLG00015013402snrpd110096.639Oryzias_latipes_hsok
ENSMUSG00000002477Snrpd110096.639ENSOMEG00000011571snrpd110096.639Oryzias_melastigma
ENSMUSG00000002477Snrpd110096.639ENSOGAG00000007833SNRPD110096.639Otolemur_garnettii
ENSMUSG00000002477Snrpd110094.958ENSOARG00000003413-8594.958Ovis_aries
ENSMUSG00000002477Snrpd1100100.000ENSPPAG00000042593SNRPD1100100.000Pan_paniscus
ENSMUSG00000002477Snrpd19472.321ENSPPRG00000005009-9272.321Panthera_pardus
ENSMUSG00000002477Snrpd1100100.000ENSPPRG00000002399SNRPD1100100.000Panthera_pardus
ENSMUSG00000002477Snrpd196100.000ENSPTIG00000013206SNRPD1100100.000Panthera_tigris_altaica
ENSMUSG00000002477Snrpd18694.118ENSPTRG00000050159-8794.118Pan_troglodytes
ENSMUSG00000002477Snrpd1100100.000ENSPTRG00000009909SNRPD1100100.000Pan_troglodytes
ENSMUSG00000002477Snrpd1100100.000ENSPANG00000023478SNRPD1100100.000Papio_anubis
ENSMUSG00000002477Snrpd18895.238ENSPKIG00000021610snrpd19495.238Paramormyrops_kingsleyae
ENSMUSG00000002477Snrpd110097.479ENSPKIG00000003985SNRPD110097.479Paramormyrops_kingsleyae
ENSMUSG00000002477Snrpd110096.639ENSPMGG00000001862snrpd110096.639Periophthalmus_magnuspinnatus
ENSMUSG00000002477Snrpd1100100.000ENSPEMG00000014773-100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000002477Snrpd18682.692ENSPMAG00000003938-8582.692Petromyzon_marinus
ENSMUSG00000002477Snrpd1100100.000ENSPCIG00000020320SNRPD1100100.000Phascolarctos_cinereus
ENSMUSG00000002477Snrpd18195.833ENSPFOG00000012448SNRPD18595.833Poecilia_formosa
ENSMUSG00000002477Snrpd18195.833ENSPLAG00000006738snrpd18595.833Poecilia_latipinna
ENSMUSG00000002477Snrpd18195.833ENSPMEG00000021942snrpd18595.833Poecilia_mexicana
ENSMUSG00000002477Snrpd110096.639ENSPREG00000007094snrpd110096.639Poecilia_reticulata
ENSMUSG00000002477Snrpd1100100.000ENSPPYG00000025874SNRPD1100100.000Pongo_abelii
ENSMUSG00000002477Snrpd1100100.000ENSPCOG00000013327SNRPD1100100.000Propithecus_coquereli
ENSMUSG00000002477Snrpd1100100.000ENSPVAG00000005511SNRPD180100.000Pteropus_vampyrus
ENSMUSG00000002477Snrpd110096.639ENSPNAG00000017824snrpd110096.639Pygocentrus_nattereri
ENSMUSG00000002477Snrpd1100100.000ENSRNOG00000013714Snrpd1100100.000Rattus_norvegicus
ENSMUSG00000002477Snrpd1100100.000ENSRBIG00000022996SNRPD1100100.000Rhinopithecus_bieti
ENSMUSG00000002477Snrpd1100100.000ENSRROG00000027640SNRPD1100100.000Rhinopithecus_roxellana
ENSMUSG00000002477Snrpd1100100.000ENSSBOG00000020998SNRPD1100100.000Saimiri_boliviensis_boliviensis
ENSMUSG00000002477Snrpd1100100.000ENSSHAG00000011791SNRPD1100100.000Sarcophilus_harrisii
ENSMUSG00000002477Snrpd19495.536ENSSFOG00015008809-9495.536Scleropages_formosus
ENSMUSG00000002477Snrpd19495.536ENSSFOG00015022253-9495.536Scleropages_formosus
ENSMUSG00000002477Snrpd19495.536ENSSMAG00000008765snrpd19495.536Scophthalmus_maximus
ENSMUSG00000002477Snrpd19195.370ENSSDUG00000010521snrpd19295.370Seriola_dumerili
ENSMUSG00000002477Snrpd110096.639ENSSLDG00000011858snrpd110096.639Seriola_lalandi_dorsalis
ENSMUSG00000002477Snrpd156100.000ENSSARG00000004271SNRPD1100100.000Sorex_araneus
ENSMUSG00000002477Snrpd1100100.000ENSSPUG00000002824SNRPD1100100.000Sphenodon_punctatus
ENSMUSG00000002477Snrpd19496.429ENSSPAG00000015229snrpd110096.429Stegastes_partitus
ENSMUSG00000002477Snrpd1100100.000ENSSSCG00000003701SNRPD1100100.000Sus_scrofa
ENSMUSG00000002477Snrpd197100.000ENSTGUG00000005095SNRPD197100.000Taeniopygia_guttata
ENSMUSG00000002477Snrpd19496.429ENSTRUG00000008977snrpd110096.429Takifugu_rubripes
ENSMUSG00000002477Snrpd18191.667ENSTNIG00000001224snrpd19291.667Tetraodon_nigroviridis
ENSMUSG00000002477Snrpd174100.000ENSTBEG00000013776SNRPD1100100.000Tupaia_belangeri
ENSMUSG00000002477Snrpd197100.000ENSTTRG00000002654SNRPD1100100.000Tursiops_truncatus
ENSMUSG00000002477Snrpd196100.000ENSUAMG00000013431SNRPD197100.000Ursus_americanus
ENSMUSG00000002477Snrpd1100100.000ENSUMAG00000019740SNRPD1100100.000Ursus_maritimus
ENSMUSG00000002477Snrpd1100100.000ENSVPAG00000010056SNRPD180100.000Vicugna_pacos
ENSMUSG00000002477Snrpd194100.000ENSVVUG00000004009SNRPD1100100.000Vulpes_vulpes
ENSMUSG00000002477Snrpd110098.319ENSXETG00000027354snrpd110098.319Xenopus_tropicalis
ENSMUSG00000002477Snrpd110096.639ENSXCOG00000020108snrpd110096.639Xiphophorus_couchianus
ENSMUSG00000002477Snrpd110096.639ENSXMAG00000003368snrpd110096.639Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000243commitment complex21873635.IBAComponent
GO:0000387spliceosomal snRNP assembly21873635.IBAProcess
GO:0000387spliceosomal snRNP assembly-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus15369763.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005682U5 snRNP21873635.IBAComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP-ISOComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005687U4 snRNP21873635.IBAComponent
GO:0005687U4 snRNP-ISOComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005689U12-type spliceosomal complex-ISOComponent
GO:0005737cytoplasm15369763.IDAComponent
GO:0005829cytosol-ISOComponent
GO:0006396RNA processing-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0034709methylosome-ISOComponent
GO:0034715pICln-Sm protein complex21873635.IBAComponent
GO:0034715pICln-Sm protein complex-ISOComponent
GO:0034719SMN-Sm protein complex21873635.IBAComponent
GO:0034719SMN-Sm protein complex-ISOComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:1990446U1 snRNP binding-ISOFunction

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