EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000002658 (Gene tree)
Gene ID: 98053
Gene Symbol: Gtf2f1
Alias: 2810405L04Rik
Full Name: general transcription factor IIF%2C polypeptide 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 7884
Position: chr17: 57003405-57011288
Accession: 1923848
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000002733	-	1717	XM_006525194	ENSMUSP00000002733	508 (aa)	XP_006525257	Q3THK3

Gene Model

Click here to download ENSMUSG00000002658's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03022	Basal transcription factors	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002658's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000002658	Gtf2f1	100	91.489	ENSG00000125651	GTF2F1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005515	protein binding	9265625.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005669	transcription factor TFIID complex	-	ISO	Component
GO:0006367	transcription initiation from RNA polymerase II promoter	-	IEA	Process
GO:0008134	transcription factor binding	-	ISO	Function
GO:0016251	RNA polymerase II general transcription initiation factor activity	-	ISO	Function
GO:0019211	phosphatase activator activity	-	ISO	Function
GO:0019903	protein phosphatase binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030054	cell junction	-	ISO	Component
GO:0032091	negative regulation of protein binding	-	ISO	Process
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	-	IEA	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	9265625.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:1990841	promoter-specific chromatin binding	-	ISO	Function