EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000002731 (Gene tree)
Gene ID: 23992
Gene Symbol: Prkra
Alias: PRK|Pact|RAX|lear
Full Name: protein kinase%2C interferon inducible double stranded RNA dependent activator
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 18118 bases
Position: chr2:76629898-76648015
Accession: 1344375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000002808	dsrm	PF00035.26	5.2e-32	1	2
ENSMUSP00000002808	dsrm	PF00035.26	5.2e-32	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000140493	-	706	-	-	- (aa)	-	-
ENSMUST00000002808	-	1614	XM_011239517	ENSMUSP00000002808	313 (aa)	XP_017173512	Q9WTX2

Gene Model

Click here to download ENSMUSG00000002731's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002731's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000002731	Prkra	94	42.614	ENSMUSG00000023051	Tarbp2	91	54.717
ENSMUSG00000002731	Prkra	53	31.395	ENSMUSG00000039536	Stau1	52	31.395

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000002731	Prkra	100	98.083	ENSG00000180228	PRKRA	100	98.611	Homo_sapiens
ENSMUSG00000002731	Prkra	94	52.881	ENSAPOG00000019819	prkra	96	52.881	Acanthochromis_polyacanthus
ENSMUSG00000002731	Prkra	100	97.764	ENSAMEG00000000803	PRKRA	100	97.764	Ailuropoda_melanoleuca
ENSMUSG00000002731	Prkra	92	50.865	ENSACIG00000020131	prkra	98	51.773	Amphilophus_citrinellus
ENSMUSG00000002731	Prkra	91	51.930	ENSAOCG00000008651	prkra	99	51.930	Amphiprion_ocellaris
ENSMUSG00000002731	Prkra	91	54.007	ENSAPEG00000022769	prkra	97	51.930	Amphiprion_percula
ENSMUSG00000002731	Prkra	99	50.968	ENSATEG00000015036	prkra	99	50.968	Anabas_testudineus
ENSMUSG00000002731	Prkra	93	64.966	ENSACAG00000017232	PRKRA	83	64.966	Anolis_carolinensis
ENSMUSG00000002731	Prkra	100	98.083	ENSANAG00000019410	PRKRA	100	98.083	Aotus_nancymaae
ENSMUSG00000002731	Prkra	96	50.667	ENSACLG00000008370	prkra	98	50.667	Astatotilapia_calliptera
ENSMUSG00000002731	Prkra	89	55.755	ENSAMXG00000034602	prkra	91	55.755	Astyanax_mexicanus
ENSMUSG00000002731	Prkra	100	96.805	ENSBTAG00000001096	PRKRA	100	96.805	Bos_taurus
ENSMUSG00000002731	Prkra	100	98.403	ENSCJAG00000021521	PRKRA	100	98.403	Callithrix_jacchus
ENSMUSG00000002731	Prkra	100	98.083	ENSCAFG00000013850	PRKRA	100	98.083	Canis_familiaris
ENSMUSG00000002731	Prkra	100	96.486	ENSCHIG00000015333	PRKRA	100	96.486	Capra_hircus
ENSMUSG00000002731	Prkra	100	98.403	ENSTSYG00000009707	PRKRA	100	98.403	Carlito_syrichta
ENSMUSG00000002731	Prkra	74	78.970	ENSCAPG00000006602	PRKRA	100	78.970	Cavia_aperea
ENSMUSG00000002731	Prkra	100	97.764	ENSCPOG00000003900	-	100	97.764	Cavia_porcellus
ENSMUSG00000002731	Prkra	100	85.220	ENSCPOG00000008302	-	100	86.792	Cavia_porcellus
ENSMUSG00000002731	Prkra	100	98.403	ENSCCAG00000024400	PRKRA	100	98.403	Cebus_capucinus
ENSMUSG00000002731	Prkra	98	90.850	ENSCATG00000037246	-	98	91.186	Cercocebus_atys
ENSMUSG00000002731	Prkra	100	98.083	ENSCATG00000032736	PRKRA	100	98.083	Cercocebus_atys
ENSMUSG00000002731	Prkra	94	98.635	ENSCLAG00000010338	PRKRA	98	98.635	Chinchilla_lanigera
ENSMUSG00000002731	Prkra	98	92.484	ENSCSAG00000018878	-	98	92.484	Chlorocebus_sabaeus
ENSMUSG00000002731	Prkra	93	69.283	ENSCPBG00000021934	PRKRA	93	69.283	Chrysemys_picta_bellii
ENSMUSG00000002731	Prkra	90	98.587	ENSCANG00000034610	PRKRA	100	98.587	Colobus_angolensis_palliatus
ENSMUSG00000002731	Prkra	92	90.972	ENSCANG00000037988	-	100	90.972	Colobus_angolensis_palliatus
ENSMUSG00000002731	Prkra	100	98.403	ENSCGRG00001009200	Prkra	79	98.403	Cricetulus_griseus_chok1gshd
ENSMUSG00000002731	Prkra	100	98.403	ENSCGRG00000002863	Prkra	100	98.403	Cricetulus_griseus_crigri
ENSMUSG00000002731	Prkra	90	52.128	ENSCSEG00000002954	prkra	85	52.330	Cynoglossus_semilaevis
ENSMUSG00000002731	Prkra	90	50.699	ENSCVAG00000002749	prkra	91	50.699	Cyprinodon_variegatus
ENSMUSG00000002731	Prkra	89	50.865	ENSDARG00000076718	prkra	97	50.865	Danio_rerio
ENSMUSG00000002731	Prkra	100	97.125	ENSDNOG00000019701	PRKRA	100	97.125	Dasypus_novemcinctus
ENSMUSG00000002731	Prkra	100	96.166	ENSDORG00000013338	Prkra	100	96.166	Dipodomys_ordii
ENSMUSG00000002731	Prkra	65	90.196	ENSETEG00000010357	PRKRA	100	90.196	Echinops_telfairi
ENSMUSG00000002731	Prkra	100	98.083	ENSEASG00005022436	PRKRA	100	98.083	Equus_asinus_asinus
ENSMUSG00000002731	Prkra	100	98.083	ENSECAG00000024263	PRKRA	100	98.083	Equus_caballus
ENSMUSG00000002731	Prkra	100	85.942	ENSEEUG00000000476	PRKRA	100	85.942	Erinaceus_europaeus
ENSMUSG00000002731	Prkra	95	51.768	ENSELUG00000023321	prkra	95	51.768	Esox_lucius
ENSMUSG00000002731	Prkra	100	98.083	ENSFCAG00000031042	PRKRA	100	98.083	Felis_catus
ENSMUSG00000002731	Prkra	99	94.194	ENSFDAG00000012882	PRKRA	99	94.754	Fukomys_damarensis
ENSMUSG00000002731	Prkra	89	49.640	ENSGMOG00000004021	prkra	94	49.640	Gadus_morhua
ENSMUSG00000002731	Prkra	90	50.699	ENSGAFG00000004418	prkra	91	51.049	Gambusia_affinis
ENSMUSG00000002731	Prkra	90	53.357	ENSGACG00000004394	prkra	92	53.357	Gasterosteus_aculeatus
ENSMUSG00000002731	Prkra	93	69.283	ENSGAGG00000010791	PRKRA	93	69.283	Gopherus_agassizii
ENSMUSG00000002731	Prkra	100	97.764	ENSGGOG00000005754	PRKRA	100	97.764	Gorilla_gorilla
ENSMUSG00000002731	Prkra	96	50.667	ENSHBUG00000020169	prkra	98	50.667	Haplochromis_burtoni
ENSMUSG00000002731	Prkra	98	83.117	ENSHGLG00000002194	-	98	83.117	Heterocephalus_glaber_female
ENSMUSG00000002731	Prkra	100	95.847	ENSHGLG00000010663	PRKRA	100	95.847	Heterocephalus_glaber_female
ENSMUSG00000002731	Prkra	93	96.907	ENSHGLG00100013982	-	100	96.907	Heterocephalus_glaber_male
ENSMUSG00000002731	Prkra	98	83.117	ENSHGLG00100004391	-	98	83.117	Heterocephalus_glaber_male
ENSMUSG00000002731	Prkra	90	50.000	ENSHCOG00000000168	prkra	91	50.000	Hippocampus_comes
ENSMUSG00000002731	Prkra	90	54.093	ENSIPUG00000019396	prkra	95	54.093	Ictalurus_punctatus
ENSMUSG00000002731	Prkra	100	97.444	ENSSTOG00000006156	PRKRA	100	97.444	Ictidomys_tridecemlineatus
ENSMUSG00000002731	Prkra	100	97.444	ENSJJAG00000013031	Prkra	100	97.444	Jaculus_jaculus
ENSMUSG00000002731	Prkra	90	51.724	ENSKMAG00000016206	prkra	91	51.724	Kryptolebias_marmoratus
ENSMUSG00000002731	Prkra	99	50.479	ENSLBEG00000017208	prkra	99	50.479	Labrus_bergylta
ENSMUSG00000002731	Prkra	99	63.023	ENSLACG00000002855	PRKRA	99	63.023	Latimeria_chalumnae
ENSMUSG00000002731	Prkra	96	55.700	ENSLOCG00000006829	prkra	97	55.700	Lepisosteus_oculatus
ENSMUSG00000002731	Prkra	78	96.721	ENSLAFG00000026940	PRKRA	100	96.721	Loxodonta_africana
ENSMUSG00000002731	Prkra	100	98.083	ENSMFAG00000040213	PRKRA	100	98.083	Macaca_fascicularis
ENSMUSG00000002731	Prkra	95	97.973	ENSMMUG00000002185	PRKRA	98	97.973	Macaca_mulatta
ENSMUSG00000002731	Prkra	97	84.590	ENSMNEG00000030245	-	98	84.746	Macaca_nemestrina
ENSMUSG00000002731	Prkra	100	98.083	ENSMNEG00000031681	PRKRA	100	98.083	Macaca_nemestrina
ENSMUSG00000002731	Prkra	92	92.683	ENSMLEG00000031889	-	99	92.832	Mandrillus_leucophaeus
ENSMUSG00000002731	Prkra	92	98.611	ENSMLEG00000019578	PRKRA	100	98.611	Mandrillus_leucophaeus
ENSMUSG00000002731	Prkra	91	52.982	ENSMAMG00000006591	prkra	92	52.982	Mastacembelus_armatus
ENSMUSG00000002731	Prkra	81	46.063	ENSMZEG00005004467	prkra	86	46.063	Maylandia_zebra
ENSMUSG00000002731	Prkra	100	98.722	ENSMAUG00000019631	Prkra	100	98.722	Mesocricetus_auratus
ENSMUSG00000002731	Prkra	100	98.083	ENSMICG00000009883	PRKRA	100	98.083	Microcebus_murinus
ENSMUSG00000002731	Prkra	100	97.764	ENSMOCG00000004548	Prkra	100	97.764	Microtus_ochrogaster
ENSMUSG00000002731	Prkra	90	48.299	ENSMMOG00000000434	prkra	97	48.299	Mola_mola
ENSMUSG00000002731	Prkra	96	80.936	ENSMODG00000009823	PRKRA	98	80.392	Monodelphis_domestica
ENSMUSG00000002731	Prkra	100	51.420	ENSMALG00000010225	prkra	94	51.420	Monopterus_albus
ENSMUSG00000002731	Prkra	100	99.681	MGP_CAROLIEiJ_G0023688	Prkra	100	99.681	Mus_caroli
ENSMUSG00000002731	Prkra	100	100.000	MGP_PahariEiJ_G0025139	Prkra	100	100.000	Mus_pahari
ENSMUSG00000002731	Prkra	100	99.042	MGP_SPRETEiJ_G0024609	Prkra	100	99.042	Mus_spretus
ENSMUSG00000002731	Prkra	100	98.083	ENSMPUG00000003180	PRKRA	100	98.083	Mustela_putorius_furo
ENSMUSG00000002731	Prkra	92	75.433	ENSMLUG00000024042	-	100	75.433	Myotis_lucifugus
ENSMUSG00000002731	Prkra	100	96.486	ENSMLUG00000005810	-	100	96.486	Myotis_lucifugus
ENSMUSG00000002731	Prkra	100	97.444	ENSNGAG00000021816	Prkra	100	97.444	Nannospalax_galili
ENSMUSG00000002731	Prkra	96	51.000	ENSNBRG00000010819	prkra	98	51.000	Neolamprologus_brichardi
ENSMUSG00000002731	Prkra	92	98.611	ENSNLEG00000006120	-	100	98.611	Nomascus_leucogenys
ENSMUSG00000002731	Prkra	93	74.570	ENSMEUG00000002625	PRKRA	100	74.570	Notamacropus_eugenii
ENSMUSG00000002731	Prkra	99	78.205	ENSOPRG00000007575	PRKRA	100	78.205	Ochotona_princeps
ENSMUSG00000002731	Prkra	94	84.068	ENSODEG00000007930	-	98	84.068	Octodon_degus
ENSMUSG00000002731	Prkra	100	98.083	ENSODEG00000008743	-	100	98.083	Octodon_degus
ENSMUSG00000002731	Prkra	88	53.986	ENSONIG00000008579	prkra	96	53.986	Oreochromis_niloticus
ENSMUSG00000002731	Prkra	100	62.342	ENSOANG00000008630	-	100	62.342	Ornithorhynchus_anatinus
ENSMUSG00000002731	Prkra	100	96.486	ENSOCUG00000005489	PRKRA	100	96.486	Oryctolagus_cuniculus
ENSMUSG00000002731	Prkra	91	53.378	ENSORLG00000017598	prkra	91	53.559	Oryzias_latipes
ENSMUSG00000002731	Prkra	91	53.378	ENSORLG00020020348	prkra	91	53.559	Oryzias_latipes_hni
ENSMUSG00000002731	Prkra	91	52.703	ENSORLG00015014417	prkra	91	53.061	Oryzias_latipes_hsok
ENSMUSG00000002731	Prkra	94	53.020	ENSOMEG00000005162	prkra	94	53.020	Oryzias_melastigma
ENSMUSG00000002731	Prkra	100	98.083	ENSOGAG00000013971	PRKRA	100	98.083	Otolemur_garnettii
ENSMUSG00000002731	Prkra	100	96.805	ENSOARG00000017321	PRKRA	100	96.805	Ovis_aries
ENSMUSG00000002731	Prkra	83	98.084	ENSPPAG00000043306	PRKRA	100	98.084	Pan_paniscus
ENSMUSG00000002731	Prkra	100	98.083	ENSPPRG00000011982	-	100	98.083	Panthera_pardus
ENSMUSG00000002731	Prkra	93	98.969	ENSPTIG00000010369	PRKRA	100	98.958	Panthera_tigris_altaica
ENSMUSG00000002731	Prkra	100	98.083	ENSPTRG00000012688	PRKRA	100	98.083	Pan_troglodytes
ENSMUSG00000002731	Prkra	100	98.083	ENSPANG00000001046	PRKRA	100	98.083	Papio_anubis
ENSMUSG00000002731	Prkra	94	90.572	ENSPANG00000035264	-	100	90.572	Papio_anubis
ENSMUSG00000002731	Prkra	91	55.363	ENSPKIG00000022368	prkra	91	55.594	Paramormyrops_kingsleyae
ENSMUSG00000002731	Prkra	92	68.858	ENSPSIG00000002848	PRKRA	100	68.858	Pelodiscus_sinensis
ENSMUSG00000002731	Prkra	100	97.764	ENSPEMG00000011967	Prkra	100	97.764	Peromyscus_maniculatus_bairdii
ENSMUSG00000002731	Prkra	98	80.844	ENSPCIG00000025371	PRKRA	72	80.844	Phascolarctos_cinereus
ENSMUSG00000002731	Prkra	90	50.350	ENSPFOG00000015000	prkra	90	50.350	Poecilia_formosa
ENSMUSG00000002731	Prkra	90	50.000	ENSPLAG00000021726	prkra	91	50.000	Poecilia_latipinna
ENSMUSG00000002731	Prkra	90	50.350	ENSPMEG00000006172	prkra	90	50.350	Poecilia_mexicana
ENSMUSG00000002731	Prkra	90	49.650	ENSPREG00000005680	prkra	91	49.650	Poecilia_reticulata
ENSMUSG00000002731	Prkra	100	97.764	ENSPPYG00000012976	PRKRA	100	97.764	Pongo_abelii
ENSMUSG00000002731	Prkra	100	98.403	ENSPCOG00000018812	PRKRA	100	98.403	Propithecus_coquereli
ENSMUSG00000002731	Prkra	100	87.540	ENSPVAG00000017505	PRKRA	100	87.540	Pteropus_vampyrus
ENSMUSG00000002731	Prkra	96	50.333	ENSPNYG00000008795	prkra	98	50.333	Pundamilia_nyererei
ENSMUSG00000002731	Prkra	90	51.557	ENSPNAG00000021962	prkra	90	51.557	Pygocentrus_nattereri
ENSMUSG00000002731	Prkra	100	99.361	ENSRNOG00000011195	Prkra	100	99.361	Rattus_norvegicus
ENSMUSG00000002731	Prkra	95	93.960	ENSRBIG00000042015	-	99	93.960	Rhinopithecus_bieti
ENSMUSG00000002731	Prkra	100	97.764	ENSRBIG00000035301	PRKRA	100	97.764	Rhinopithecus_bieti
ENSMUSG00000002731	Prkra	100	97.764	ENSRROG00000035389	PRKRA	100	97.764	Rhinopithecus_roxellana
ENSMUSG00000002731	Prkra	100	98.083	ENSSBOG00000012105	PRKRA	100	98.083	Saimiri_boliviensis_boliviensis
ENSMUSG00000002731	Prkra	93	81.100	ENSSHAG00000009949	PRKRA	100	81.100	Sarcophilus_harrisii
ENSMUSG00000002731	Prkra	90	52.465	ENSSFOG00015002157	prkra	90	52.465	Scleropages_formosus
ENSMUSG00000002731	Prkra	95	52.090	ENSSMAG00000015615	prkra	87	52.090	Scophthalmus_maximus
ENSMUSG00000002731	Prkra	91	54.035	ENSSDUG00000000636	prkra	92	54.035	Seriola_dumerili
ENSMUSG00000002731	Prkra	91	51.228	ENSSLDG00000000652	prkra	88	51.228	Seriola_lalandi_dorsalis
ENSMUSG00000002731	Prkra	100	94.268	ENSSARG00000003080	PRKRA	100	94.268	Sorex_araneus
ENSMUSG00000002731	Prkra	93	67.466	ENSSPUG00000006140	PRKRA	84	67.466	Sphenodon_punctatus
ENSMUSG00000002731	Prkra	97	50.164	ENSSPAG00000021062	prkra	98	50.164	Stegastes_partitus
ENSMUSG00000002731	Prkra	100	98.083	ENSSSCG00000038254	PRKRA	100	98.083	Sus_scrofa
ENSMUSG00000002731	Prkra	99	48.077	ENSTRUG00000021336	prkra	99	48.077	Takifugu_rubripes
ENSMUSG00000002731	Prkra	96	49.013	ENSTNIG00000016963	prkra	98	49.013	Tetraodon_nigroviridis
ENSMUSG00000002731	Prkra	100	96.805	ENSTBEG00000006494	PRKRA	100	96.805	Tupaia_belangeri
ENSMUSG00000002731	Prkra	83	97.701	ENSTTRG00000009700	PRKRA	100	97.701	Tursiops_truncatus
ENSMUSG00000002731	Prkra	92	98.611	ENSUMAG00000016566	PRKRA	100	98.611	Ursus_maritimus
ENSMUSG00000002731	Prkra	93	88.660	ENSVPAG00000003485	PRKRA	100	88.660	Vicugna_pacos
ENSMUSG00000002731	Prkra	95	98.311	ENSVVUG00000010032	PRKRA	98	98.311	Vulpes_vulpes
ENSMUSG00000002731	Prkra	90	50.350	ENSXMAG00000027764	prkra	91	50.350	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0005515	protein binding	17452327.	IPI	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006468	protein phosphorylation	10336432.	IDA	Process
GO:0008047	enzyme activator activity	-	IEA	Function
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0030422	production of siRNA involved in RNA interference	-	ISO	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0031054	pre-miRNA processing	-	ISO	Process
GO:0034599	cellular response to oxidative stress	10336432.	IDA	Process
GO:0035196	production of miRNAs involved in gene silencing by miRNA	-	ISO	Process
GO:0042473	outer ear morphogenesis	16571658.	IMP	Process
GO:0042474	middle ear morphogenesis	16571658.	IMP	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043583	ear development	26234751.	IMP	Process
GO:0048705	skeletal system morphogenesis	16571658.	IMP	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0070578	RISC-loading complex	-	ISO	Component
GO:0070883	pre-miRNA binding	-	ISO	Function
GO:2001244	positive regulation of intrinsic apoptotic signaling pathway	12181197.	IDA	Process