EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000201261	-	590	-	ENSMUSP00000144090	131 (aa)	-	A0A0J9YUA7
ENSMUST00000003038	-	4646	XM_006536154	ENSMUSP00000003038	938 (aa)	-	P17427
ENSMUST00000201320	-	1549	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04144	Endocytosis	KEGG
mmu04721	Synaptic vesicle cycle	KEGG
mmu04961	Endocrine and other factor-regulated calcium reabsorption	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000002957	Ap2a2	95	96.000	ENSG00000196961	AP2A1	98	92.857	Homo_sapiens
ENSMUSG00000002957	Ap2a2	95	96.000	ENSMUSG00000060279	Ap2a1	100	81.648	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	17182770.29262337.	IPI	Function
GO:0005886	plasma membrane	-	IEA	Component
GO:0005905	clathrin-coated pit	-	IEA	Component
GO:0006886	intracellular protein transport	9714600.	TAS	Process
GO:0006897	endocytosis	-	IEA	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0008289	lipid binding	-	IEA	Function
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	9714600.	TAS	Process
GO:0019901	protein kinase binding	21307259.	IPI	Function
GO:0019904	protein domain specific binding	12732633.	IPI	Function
GO:0030117	membrane coat	11879655.	IDA	Component
GO:0030122	AP-2 adaptor complex	-	ISO	Component
GO:0030131	clathrin adaptor complex	-	IEA	Component
GO:0030141	secretory granule	9714600.	TAS	Component
GO:0031410	cytoplasmic vesicle	22174158.	IDA	Component
GO:0035091	phosphatidylinositol binding	-	ISO	Function
GO:0035615	clathrin adaptor activity	-	IEA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0072583	clathrin-dependent endocytosis	-	IEA	Process
GO:0097718	disordered domain specific binding	11756460.12732633.	IPI	Function
GO:1902036	regulation of hematopoietic stem cell differentiation	22174158.	NAS	Process