EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000002963 (Gene tree)
Gene ID: 59047
Gene Symbol: Pnkp
Alias: 1810009G08Rik|PNK
Full Name: polynucleotide kinase 3'- phosphatase
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 5854
Position: chr7: 44857139-44862992
Accession: 1891698
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145850	-	1975	-	-	- (aa)	-	-
ENSMUST00000200892	-	454	-	ENSMUSP00000144163	151 (aa)	-	A0A0J9YUF9
ENSMUST00000003044	-	2184	XM_006541038	ENSMUSP00000003044	522 (aa)	XP_006541101	G5E8N7
ENSMUST00000098478	-	1550	XM_006541040	ENSMUSP00000096078	486 (aa)	XP_006541103	E9Q9A5
ENSMUST00000123015	-	1573	-	ENSMUSP00000143862	180 (aa)	-	A0A0J9YTV1
ENSMUST00000202646	-	444	-	ENSMUSP00000144484	148 (aa)	-	A0A0J9YV48
ENSMUST00000155050	-	1674	-	ENSMUSP00000144663	59 (aa)	-	A0A0J9YVH5
ENSMUST00000208666	-	765	-	ENSMUSP00000147012	255 (aa)	-	A0A140LIZ1
ENSMUST00000107876	-	1770	XM_006541042	ENSMUSP00000103508	522 (aa)	XP_006541105	G5E8N7
ENSMUST00000139003	-	990	-	ENSMUSP00000143904	53 (aa)	-	A0A0J9YUT2
ENSMUST00000144669	-	455	-	-	- (aa)	-	-
ENSMUST00000126860	-	672	-	-	- (aa)	-	-
ENSMUST00000152747	-	860	-	-	- (aa)	-	-
ENSMUST00000201882	-	1497	-	ENSMUSP00000144690	426 (aa)	-	A0A0J9YVJ6
ENSMUST00000208385	-	624	-	ENSMUSP00000147079	80 (aa)	-	A0A140LJ53
ENSMUST00000124168	-	933	-	ENSMUSP00000144330	53 (aa)	-	A0A0J9YUT2
ENSMUST00000154968	-	213	-	ENSMUSP00000115504	34 (aa)	-	D3YZV7

Gene Model

Click here to download ENSMUSG00000002963's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000002963's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0006281	DNA repair	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0006979	response to oxidative stress	-	ISO	Process
GO:0008152	metabolic process	-	IEA	Process
GO:0010836	negative regulation of protein ADP-ribosylation	-	ISO	Process
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016311	dephosphorylation	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0032212	positive regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0042769	DNA damage response, detection of DNA damage	-	ISO	Process
GO:0046403	polynucleotide 3'-phosphatase activity	21873635.	IBA	Function
GO:0046403	polynucleotide 3'-phosphatase activity	-	ISO	Function
GO:0046404	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	21873635.	IBA	Function
GO:0046404	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	-	ISO	Function
GO:0046939	nucleotide phosphorylation	21873635.	IBA	Process
GO:0046939	nucleotide phosphorylation	-	ISO	Process
GO:0050145	nucleoside monophosphate kinase activity	21873635.	IBA	Function
GO:0050145	nucleoside monophosphate kinase activity	-	ISO	Function
GO:0051973	positive regulation of telomerase activity	-	ISO	Process
GO:0098504	DNA 3' dephosphorylation involved in DNA repair	21873635.	IBA	Process
GO:1904355	positive regulation of telomere capping	-	ISO	Process