EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003299 (Gene tree)
Gene ID: 66163
Gene Symbol: Mrpl4
Alias: 1110017G11Rik
Full Name: mitochondrial ribosomal protein L4
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 6102 bases
Position: chr9:21002738-21008839
Accession: 2137210
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000003386	Ribosomal_L4	PF00573.22	1.7e-54	1	1
ENSMUSP00000149690	Ribosomal_L4	PF00573.22	1.2e-40	1	1
ENSMUSP00000150112	Ribosomal_L4	PF00573.22	1.7e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000213977	-	2317	-	-	- (aa)	-	-
ENSMUST00000003386	-	1288	-	ENSMUSP00000003386	294 (aa)	-	Q9DCU6
ENSMUST00000216818	-	657	-	ENSMUSP00000149690	219 (aa)	-	A0A1L1SRY8
ENSMUST00000214124	-	815	XM_006510539	ENSMUSP00000150112	264 (aa)	XP_006510603	A0A1L1SSY9
ENSMUST00000216325	-	625	-	-	- (aa)	-	-
ENSMUST00000216824	-	715	-	ENSMUSP00000150591	160 (aa)	-	A0A1L1SU24
ENSMUST00000216175	-	846	-	ENSMUSP00000150420	172 (aa)	-	A0A1L1STN5
ENSMUST00000216466	-	305	-	ENSMUSP00000151075	33 (aa)	-	A0A1L1SV70

Gene Model

Click here to download ENSMUSG00000003299's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003299's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003299	Mrpl4	100	80.952	ENSG00000105364	MRPL4	100	89.916	Homo_sapiens
ENSMUSG00000003299	Mrpl4	98	62.543	ENSAPOG00000010156	mrpl4	96	62.543	Acanthochromis_polyacanthus
ENSMUSG00000003299	Mrpl4	100	76.531	ENSAMEG00000011808	MRPL4	100	76.531	Ailuropoda_melanoleuca
ENSMUSG00000003299	Mrpl4	84	68.293	ENSACIG00000011523	mrpl4	90	74.138	Amphilophus_citrinellus
ENSMUSG00000003299	Mrpl4	90	66.288	ENSAOCG00000018507	mrpl4	82	66.288	Amphiprion_ocellaris
ENSMUSG00000003299	Mrpl4	90	66.288	ENSAPEG00000006208	mrpl4	87	66.288	Amphiprion_percula
ENSMUSG00000003299	Mrpl4	90	65.909	ENSATEG00000021694	mrpl4	87	65.909	Anabas_testudineus
ENSMUSG00000003299	Mrpl4	100	63.423	ENSACAG00000008232	MRPL4	100	63.423	Anolis_carolinensis
ENSMUSG00000003299	Mrpl4	100	79.252	ENSANAG00000025428	MRPL4	100	79.443	Aotus_nancymaae
ENSMUSG00000003299	Mrpl4	90	65.909	ENSACLG00000017038	mrpl4	87	65.909	Astatotilapia_calliptera
ENSMUSG00000003299	Mrpl4	99	60.797	ENSAMXG00000002236	mrpl4	99	60.797	Astyanax_mexicanus
ENSMUSG00000003299	Mrpl4	75	48.485	WBGene00020717	mrpl-4	74	46.396	Caenorhabditis_elegans
ENSMUSG00000003299	Mrpl4	100	78.231	ENSCJAG00000005764	MRPL4	100	78.231	Callithrix_jacchus
ENSMUSG00000003299	Mrpl4	100	78.571	ENSCAFG00000017881	MRPL4	100	78.571	Canis_familiaris
ENSMUSG00000003299	Mrpl4	99	77.397	ENSCAFG00020024405	MRPL4	96	78.819	Canis_lupus_dingo
ENSMUSG00000003299	Mrpl4	100	79.932	ENSCHIG00000000516	MRPL4	100	79.932	Capra_hircus
ENSMUSG00000003299	Mrpl4	100	80.272	ENSTSYG00000034805	MRPL4	100	80.272	Carlito_syrichta
ENSMUSG00000003299	Mrpl4	69	85.149	ENSCAPG00000000036	MRPL4	100	85.149	Cavia_aperea
ENSMUSG00000003299	Mrpl4	100	79.730	ENSCPOG00000006506	MRPL4	100	79.730	Cavia_porcellus
ENSMUSG00000003299	Mrpl4	100	62.925	ENSCCAG00000036054	MRPL4	100	62.925	Cebus_capucinus
ENSMUSG00000003299	Mrpl4	100	80.272	ENSCLAG00000004552	MRPL4	100	80.272	Chinchilla_lanigera
ENSMUSG00000003299	Mrpl4	100	79.392	ENSCSAG00000007362	MRPL4	100	79.392	Chlorocebus_sabaeus
ENSMUSG00000003299	Mrpl4	85	71.888	ENSCPBG00000005432	MRPL4	99	71.888	Chrysemys_picta_bellii
ENSMUSG00000003299	Mrpl4	85	38.800	ENSCING00000003144	-	79	38.800	Ciona_intestinalis
ENSMUSG00000003299	Mrpl4	85	41.365	ENSCSAVG00000007005	-	81	41.365	Ciona_savignyi
ENSMUSG00000003299	Mrpl4	87	73.381	ENSCANG00000033167	MRPL4	65	58.704	Colobus_angolensis_palliatus
ENSMUSG00000003299	Mrpl4	100	89.796	ENSCGRG00001013642	Mrpl4	100	89.796	Cricetulus_griseus_chok1gshd
ENSMUSG00000003299	Mrpl4	100	89.796	ENSCGRG00000012922	Mrpl4	100	89.796	Cricetulus_griseus_crigri
ENSMUSG00000003299	Mrpl4	90	64.015	ENSCSEG00000020580	mrpl4	87	64.015	Cynoglossus_semilaevis
ENSMUSG00000003299	Mrpl4	73	64.375	ENSCVAG00000017296	mrpl4	82	67.742	Cyprinodon_variegatus
ENSMUSG00000003299	Mrpl4	97	59.333	ENSDARG00000058824	mrpl4	99	59.333	Danio_rerio
ENSMUSG00000003299	Mrpl4	100	72.789	ENSDNOG00000044263	-	100	73.129	Dasypus_novemcinctus
ENSMUSG00000003299	Mrpl4	100	65.646	ENSDNOG00000010139	-	100	65.646	Dasypus_novemcinctus
ENSMUSG00000003299	Mrpl4	86	85.771	ENSDORG00000003723	Mrpl4	99	85.771	Dipodomys_ordii
ENSMUSG00000003299	Mrpl4	77	55.310	FBgn0001995	mRpL4	76	55.310	Drosophila_melanogaster
ENSMUSG00000003299	Mrpl4	99	79.310	ENSETEG00000002009	MRPL4	97	79.655	Echinops_telfairi
ENSMUSG00000003299	Mrpl4	90	63.396	ENSEBUG00000016597	mrpl4	86	63.396	Eptatretus_burgeri
ENSMUSG00000003299	Mrpl4	100	76.871	ENSEASG00005010556	MRPL4	98	76.871	Equus_asinus_asinus
ENSMUSG00000003299	Mrpl4	100	76.531	ENSECAG00000017013	MRPL4	98	76.531	Equus_caballus
ENSMUSG00000003299	Mrpl4	69	86.885	ENSEEUG00000012011	MRPL4	96	56.803	Erinaceus_europaeus
ENSMUSG00000003299	Mrpl4	85	64.659	ENSELUG00000010463	mrpl4	84	63.566	Esox_lucius
ENSMUSG00000003299	Mrpl4	99	72.936	ENSFCAG00000043071	MRPL4	95	76.518	Felis_catus
ENSMUSG00000003299	Mrpl4	77	83.628	ENSFDAG00000001936	MRPL4	100	83.628	Fukomys_damarensis
ENSMUSG00000003299	Mrpl4	90	67.424	ENSFHEG00000003126	mrpl4	87	67.424	Fundulus_heteroclitus
ENSMUSG00000003299	Mrpl4	90	62.879	ENSGMOG00000007229	mrpl4	93	62.879	Gadus_morhua
ENSMUSG00000003299	Mrpl4	88	66.279	ENSGAFG00000018136	mrpl4	84	66.279	Gambusia_affinis
ENSMUSG00000003299	Mrpl4	84	65.041	ENSGACG00000019808	mrpl4	87	62.500	Gasterosteus_aculeatus
ENSMUSG00000003299	Mrpl4	85	73.494	ENSGAGG00000018010	MRPL4	82	73.494	Gopherus_agassizii
ENSMUSG00000003299	Mrpl4	100	79.592	ENSGGOG00000036529	-	95	79.592	Gorilla_gorilla
ENSMUSG00000003299	Mrpl4	90	65.909	ENSHBUG00000006332	mrpl4	87	65.909	Haplochromis_burtoni
ENSMUSG00000003299	Mrpl4	100	78.378	ENSHGLG00000007839	MRPL4	100	78.378	Heterocephalus_glaber_female
ENSMUSG00000003299	Mrpl4	100	76.871	ENSHGLG00100002720	MRPL4	100	76.871	Heterocephalus_glaber_male
ENSMUSG00000003299	Mrpl4	84	64.516	ENSHCOG00000002016	mrpl4	84	64.659	Hippocampus_comes
ENSMUSG00000003299	Mrpl4	99	59.603	ENSIPUG00000011705	mrpl4	96	59.603	Ictalurus_punctatus
ENSMUSG00000003299	Mrpl4	59	87.861	ENSSTOG00000030121	MRPL4	87	87.861	Ictidomys_tridecemlineatus
ENSMUSG00000003299	Mrpl4	100	78.912	ENSJJAG00000010573	Mrpl4	100	78.912	Jaculus_jaculus
ENSMUSG00000003299	Mrpl4	90	64.773	ENSKMAG00000012769	mrpl4	86	64.773	Kryptolebias_marmoratus
ENSMUSG00000003299	Mrpl4	90	65.909	ENSLBEG00000000848	mrpl4	87	65.909	Labrus_bergylta
ENSMUSG00000003299	Mrpl4	85	71.084	ENSLACG00000009255	MRPL4	76	71.084	Latimeria_chalumnae
ENSMUSG00000003299	Mrpl4	85	69.478	ENSLOCG00000016632	mrpl4	82	69.478	Lepisosteus_oculatus
ENSMUSG00000003299	Mrpl4	100	76.871	ENSLAFG00000015366	MRPL4	100	76.871	Loxodonta_africana
ENSMUSG00000003299	Mrpl4	100	79.392	ENSMFAG00000003526	MRPL4	95	79.392	Macaca_fascicularis
ENSMUSG00000003299	Mrpl4	100	79.392	ENSMMUG00000001219	MRPL4	100	79.392	Macaca_mulatta
ENSMUSG00000003299	Mrpl4	100	79.392	ENSMNEG00000040746	MRPL4	100	79.392	Macaca_nemestrina
ENSMUSG00000003299	Mrpl4	100	69.595	ENSMLEG00000041712	MRPL4	100	69.595	Mandrillus_leucophaeus
ENSMUSG00000003299	Mrpl4	84	67.480	ENSMAMG00000001736	mrpl4	87	64.773	Mastacembelus_armatus
ENSMUSG00000003299	Mrpl4	90	65.909	ENSMZEG00005005809	mrpl4	87	65.909	Maylandia_zebra
ENSMUSG00000003299	Mrpl4	58	56.154	ENSMZEG00005026076	-	88	56.154	Maylandia_zebra
ENSMUSG00000003299	Mrpl4	100	90.816	ENSMAUG00000013451	Mrpl4	100	90.816	Mesocricetus_auratus
ENSMUSG00000003299	Mrpl4	100	78.595	ENSMICG00000010267	MRPL4	100	78.595	Microcebus_murinus
ENSMUSG00000003299	Mrpl4	100	91.156	ENSMOCG00000014755	Mrpl4	100	91.156	Microtus_ochrogaster
ENSMUSG00000003299	Mrpl4	84	57.661	ENSMMOG00000013673	mrpl4	82	71.171	Mola_mola
ENSMUSG00000003299	Mrpl4	85	80.321	ENSMODG00000005476	MRPL4	82	80.321	Monodelphis_domestica
ENSMUSG00000003299	Mrpl4	85	69.076	ENSMALG00000002391	mrpl4	80	69.076	Monopterus_albus
ENSMUSG00000003299	Mrpl4	100	98.639	MGP_CAROLIEiJ_G0031854	Mrpl4	100	98.639	Mus_caroli
ENSMUSG00000003299	Mrpl4	100	96.599	MGP_PahariEiJ_G0014720	Mrpl4	100	96.599	Mus_pahari
ENSMUSG00000003299	Mrpl4	100	99.320	MGP_SPRETEiJ_G0032978	Mrpl4	100	99.320	Mus_spretus
ENSMUSG00000003299	Mrpl4	100	77.551	ENSMPUG00000006825	MRPL4	100	77.551	Mustela_putorius_furo
ENSMUSG00000003299	Mrpl4	87	83.137	ENSMLUG00000012280	MRPL4	99	83.137	Myotis_lucifugus
ENSMUSG00000003299	Mrpl4	100	83.673	ENSNGAG00000014705	Mrpl4	100	83.673	Nannospalax_galili
ENSMUSG00000003299	Mrpl4	90	66.667	ENSNBRG00000004804	mrpl4	87	66.667	Neolamprologus_brichardi
ENSMUSG00000003299	Mrpl4	100	49.664	ENSNLEG00000012155	-	95	49.339	Nomascus_leucogenys
ENSMUSG00000003299	Mrpl4	85	66.403	ENSMEUG00000002199	MRPL4	97	66.403	Notamacropus_eugenii
ENSMUSG00000003299	Mrpl4	98	78.498	ENSOPRG00000005735	MRPL4	97	78.498	Ochotona_princeps
ENSMUSG00000003299	Mrpl4	100	75.510	ENSODEG00000016194	MRPL4	100	75.510	Octodon_degus
ENSMUSG00000003299	Mrpl4	90	65.530	ENSONIG00000000136	mrpl4	87	65.530	Oreochromis_niloticus
ENSMUSG00000003299	Mrpl4	71	76.077	ENSOANG00000013891	MRPL4	100	76.077	Ornithorhynchus_anatinus
ENSMUSG00000003299	Mrpl4	91	72.603	ENSOCUG00000029187	-	98	70.701	Oryctolagus_cuniculus
ENSMUSG00000003299	Mrpl4	84	67.886	ENSORLG00000000085	mrpl4	84	65.152	Oryzias_latipes
ENSMUSG00000003299	Mrpl4	84	67.073	ENSORLG00020020476	mrpl4	87	64.394	Oryzias_latipes_hni
ENSMUSG00000003299	Mrpl4	84	67.073	ENSORLG00015020892	mrpl4	87	64.394	Oryzias_latipes_hsok
ENSMUSG00000003299	Mrpl4	99	78.840	ENSOGAG00000011051	MRPL4	99	78.840	Otolemur_garnettii
ENSMUSG00000003299	Mrpl4	100	76.871	ENSOARG00000015602	MRPL4	100	76.871	Ovis_aries
ENSMUSG00000003299	Mrpl4	100	80.612	ENSPPAG00000041740	-	95	80.612	Pan_paniscus
ENSMUSG00000003299	Mrpl4	99	72.936	ENSPPRG00000004312	MRPL4	97	76.113	Panthera_pardus
ENSMUSG00000003299	Mrpl4	99	72.936	ENSPTIG00000010912	MRPL4	95	76.113	Panthera_tigris_altaica
ENSMUSG00000003299	Mrpl4	100	80.952	ENSPTRG00000010462	MRPL4	95	80.952	Pan_troglodytes
ENSMUSG00000003299	Mrpl4	100	79.392	ENSPANG00000001265	MRPL4	95	79.392	Papio_anubis
ENSMUSG00000003299	Mrpl4	88	67.054	ENSPKIG00000008086	mrpl4	83	67.054	Paramormyrops_kingsleyae
ENSMUSG00000003299	Mrpl4	96	61.429	ENSPMGG00000002329	mrpl4	93	64.151	Periophthalmus_magnuspinnatus
ENSMUSG00000003299	Mrpl4	100	91.497	ENSPEMG00000017474	Mrpl4	100	91.497	Peromyscus_maniculatus_bairdii
ENSMUSG00000003299	Mrpl4	87	66.537	ENSPMAG00000007691	mrpl4	100	66.537	Petromyzon_marinus
ENSMUSG00000003299	Mrpl4	85	67.470	ENSPFOG00000013329	mrpl4	84	66.279	Poecilia_formosa
ENSMUSG00000003299	Mrpl4	85	67.068	ENSPLAG00000012864	mrpl4	84	65.891	Poecilia_latipinna
ENSMUSG00000003299	Mrpl4	85	67.470	ENSPMEG00000004937	mrpl4	84	66.279	Poecilia_mexicana
ENSMUSG00000003299	Mrpl4	90	64.015	ENSPREG00000021621	mrpl4	93	64.015	Poecilia_reticulata
ENSMUSG00000003299	Mrpl4	100	80.272	ENSPPYG00000009547	MRPL4	95	80.272	Pongo_abelii
ENSMUSG00000003299	Mrpl4	99	67.742	ENSPCAG00000002385	MRPL4	99	70.612	Procavia_capensis
ENSMUSG00000003299	Mrpl4	99	74.744	ENSPCOG00000016733	MRPL4	99	74.744	Propithecus_coquereli
ENSMUSG00000003299	Mrpl4	100	61.565	ENSPVAG00000003681	MRPL4	95	61.565	Pteropus_vampyrus
ENSMUSG00000003299	Mrpl4	90	65.909	ENSPNYG00000023505	mrpl4	90	65.909	Pundamilia_nyererei
ENSMUSG00000003299	Mrpl4	85	69.478	ENSPNAG00000011785	mrpl4	73	69.478	Pygocentrus_nattereri
ENSMUSG00000003299	Mrpl4	100	93.878	ENSRNOG00000020659	Mrpl4	100	93.878	Rattus_norvegicus
ENSMUSG00000003299	Mrpl4	69	85.644	ENSRBIG00000032283	-	93	85.644	Rhinopithecus_bieti
ENSMUSG00000003299	Mrpl4	100	79.932	ENSRROG00000003982	MRPL4	100	79.932	Rhinopithecus_roxellana
ENSMUSG00000003299	Mrpl4	100	78.912	ENSSBOG00000020666	MRPL4	100	78.912	Saimiri_boliviensis_boliviensis
ENSMUSG00000003299	Mrpl4	85	79.920	ENSSHAG00000008539	MRPL4	84	79.920	Sarcophilus_harrisii
ENSMUSG00000003299	Mrpl4	89	69.349	ENSSFOG00015003308	mrpl4	84	69.884	Scleropages_formosus
ENSMUSG00000003299	Mrpl4	84	62.195	ENSSMAG00000021118	mrpl4	87	60.227	Scophthalmus_maximus
ENSMUSG00000003299	Mrpl4	90	67.424	ENSSDUG00000002078	mrpl4	87	67.424	Seriola_dumerili
ENSMUSG00000003299	Mrpl4	90	67.424	ENSSLDG00000015083	mrpl4	87	67.424	Seriola_lalandi_dorsalis
ENSMUSG00000003299	Mrpl4	90	66.288	ENSSPAG00000010120	mrpl4	87	66.288	Stegastes_partitus
ENSMUSG00000003299	Mrpl4	100	79.592	ENSSSCG00000013656	MRPL4	100	81.227	Sus_scrofa
ENSMUSG00000003299	Mrpl4	90	66.288	ENSTRUG00000008532	mrpl4	85	75.000	Takifugu_rubripes
ENSMUSG00000003299	Mrpl4	84	68.952	ENSTNIG00000003265	mrpl4	87	66.667	Tetraodon_nigroviridis
ENSMUSG00000003299	Mrpl4	99	72.350	ENSTBEG00000006336	MRPL4	100	74.390	Tupaia_belangeri
ENSMUSG00000003299	Mrpl4	100	76.531	ENSTTRG00000009532	MRPL4	95	76.531	Tursiops_truncatus
ENSMUSG00000003299	Mrpl4	99	72.811	ENSUAMG00000020392	MRPL4	82	74.400	Ursus_americanus
ENSMUSG00000003299	Mrpl4	100	76.871	ENSUMAG00000025105	MRPL4	100	76.871	Ursus_maritimus
ENSMUSG00000003299	Mrpl4	99	51.536	ENSVPAG00000006123	MRPL4	96	51.701	Vicugna_pacos
ENSMUSG00000003299	Mrpl4	100	78.912	ENSVVUG00000028961	MRPL4	100	78.912	Vulpes_vulpes
ENSMUSG00000003299	Mrpl4	85	65.462	ENSXETG00000022060	mrpl4	97	58.478	Xenopus_tropicalis
ENSMUSG00000003299	Mrpl4	88	63.462	ENSXCOG00000011438	mrpl4	84	63.462	Xiphophorus_couchianus
ENSMUSG00000003299	Mrpl4	88	65.891	ENSXMAG00000030102	mrpl4	87	63.846	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005762	mitochondrial large ribosomal subunit	-	ISO	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process