EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000003360 (Gene tree)
Gene ID
74351
Gene Symbol
Ddx23
Alias
3110082M05Rik|4921506D17Rik
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
17761 bases
Position
chr15:98645134-98662894
Accession
1921601
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000003450DEADPF00270.293e-5311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000162384-321-ENSMUSP0000012516880 (aa)-E0CXN3
ENSMUST00000228973-889--- (aa)--
ENSMUST00000161030-793--- (aa)--
ENSMUST00000003450-3187XM_006521493ENSMUSP00000003450819 (aa)XP_006521556D3Z0M9
ENSMUST00000160506-3093--- (aa)--
ENSMUST00000159423-3411--- (aa)--
ENSMUST00000159170-610--- (aa)--
Gene Model
Click here to download ENSMUSG00000003360's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003360's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000003360Ddx235030.900ENSMUSG00000022884Eif4a29230.900
ENSMUSG00000003360Ddx235235.417ENSMUSG00000026404Ddx596435.417
ENSMUSG00000003360Ddx235240.139ENSMUSG00000021494Ddx417537.400
ENSMUSG00000003360Ddx235237.868ENSMUSG00000000787Ddx3x6337.753
ENSMUSG00000003360Ddx235430.243ENSMUSG00000020677Ddx527030.222
ENSMUSG00000003360Ddx235440.757ENSMUSG00000070291Ddx436340.757
ENSMUSG00000003360Ddx235338.063ENSMUSG00000039224D1Pas16338.063
ENSMUSG00000003360Ddx235037.915ENSMUSG00000020719Ddx58136.389
ENSMUSG00000003360Ddx235139.110ENSMUSG00000055065Ddx178038.375
ENSMUSG00000003360Ddx235038.443ENSMUSG00000069045Ddx3y6138.443
ENSMUSG00000003360Ddx235131.175ENSMUSG00000032097Ddx67731.159
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000003360Ddx2310098.537ENSG00000174243DDX2310098.537Homo_sapiens
ENSMUSG00000003360Ddx2310084.428ENSAPOG00000003760ddx239288.679Acanthochromis_polyacanthus
ENSMUSG00000003360Ddx2310098.293ENSAMEG00000007123DDX2310098.293Ailuropoda_melanoleuca
ENSMUSG00000003360Ddx238192.879ENSACIG00000000022ddx239386.198Amphilophus_citrinellus
ENSMUSG00000003360Ddx2310084.428ENSAOCG00000017348ddx239288.679Amphiprion_ocellaris
ENSMUSG00000003360Ddx2310084.756ENSAPEG00000016857ddx239288.544Amphiprion_percula
ENSMUSG00000003360Ddx2310084.268ENSATEG00000016800ddx2310084.390Anabas_testudineus
ENSMUSG00000003360Ddx239982.169ENSAPLG00000002868DDX239982.262Anas_platyrhynchos
ENSMUSG00000003360Ddx2310092.205ENSACAG00000025589DDX239692.326Anolis_carolinensis
ENSMUSG00000003360Ddx2310098.659ENSANAG00000018663DDX2310098.659Aotus_nancymaae
ENSMUSG00000003360Ddx239288.048ENSAMXG00000017597ddx2310085.384Astyanax_mexicanus
ENSMUSG00000003360Ddx2310098.293ENSBTAG00000021810DDX2310098.293Bos_taurus
ENSMUSG00000003360Ddx237167.642WBGene00017162ddx-239260.615Caenorhabditis_elegans
ENSMUSG00000003360Ddx2310098.659ENSCJAG00000020775DDX2310098.659Callithrix_jacchus
ENSMUSG00000003360Ddx2310098.537ENSCAFG00000025422DDX2310098.537Canis_familiaris
ENSMUSG00000003360Ddx2310098.537ENSCAFG00020013383DDX2310098.537Canis_lupus_dingo
ENSMUSG00000003360Ddx2310098.171ENSCHIG00000018783DDX2310098.171Capra_hircus
ENSMUSG00000003360Ddx2310098.293ENSTSYG00000005429DDX2310098.293Carlito_syrichta
ENSMUSG00000003360Ddx2310098.049ENSCPOG00000003278DDX2310098.049Cavia_porcellus
ENSMUSG00000003360Ddx2389100.000ENSCCAG00000029177DDX23100100.000Cebus_capucinus
ENSMUSG00000003360Ddx2310082.073ENSCATG00000032335-10081.585Cercocebus_atys
ENSMUSG00000003360Ddx2310098.415ENSCATG00000039797DDX2310098.415Cercocebus_atys
ENSMUSG00000003360Ddx2310098.049ENSCLAG00000002986DDX2310098.049Chinchilla_lanigera
ENSMUSG00000003360Ddx2310098.415ENSCSAG00000006240DDX2310098.415Chlorocebus_sabaeus
ENSMUSG00000003360Ddx238497.965ENSCHOG00000009027DDX2310097.965Choloepus_hoffmanni
ENSMUSG00000003360Ddx2310092.336ENSCPBG00000019988DDX2310091.971Chrysemys_picta_bellii
ENSMUSG00000003360Ddx239369.974ENSCING00000001913-9770.470Ciona_intestinalis
ENSMUSG00000003360Ddx238367.496ENSCSAVG00000004158-10067.496Ciona_savignyi
ENSMUSG00000003360Ddx2310078.441ENSCANG00000042510-10075.633Colobus_angolensis_palliatus
ENSMUSG00000003360Ddx238799.299ENSCANG00000040182DDX2310099.299Colobus_angolensis_palliatus
ENSMUSG00000003360Ddx2310099.267ENSCGRG00001015090Ddx2310099.267Cricetulus_griseus_chok1gshd
ENSMUSG00000003360Ddx2310099.267ENSCGRG00000016314Ddx2310099.267Cricetulus_griseus_crigri
ENSMUSG00000003360Ddx238391.202ENSCSEG00000020970ddx239387.166Cynoglossus_semilaevis
ENSMUSG00000003360Ddx2310085.280ENSCVAG00000015745ddx239389.651Cyprinodon_variegatus
ENSMUSG00000003360Ddx238392.070ENSDARG00000021945ddx239288.275Danio_rerio
ENSMUSG00000003360Ddx2310098.415ENSDNOG00000043176DDX2310098.415Dasypus_novemcinctus
ENSMUSG00000003360Ddx2310098.415ENSDORG00000012659Ddx2310098.415Dipodomys_ordii
ENSMUSG00000003360Ddx238570.323FBgn0032690CG103338670.183Drosophila_melanogaster
ENSMUSG00000003360Ddx239994.328ENSETEG00000015816DDX239194.467Echinops_telfairi
ENSMUSG00000003360Ddx238182.556ENSEBUG00000003319ddx239382.727Eptatretus_burgeri
ENSMUSG00000003360Ddx2310098.171ENSEASG00005000455DDX2310098.171Equus_asinus_asinus
ENSMUSG00000003360Ddx2310098.293ENSECAG00000016681DDX2310098.293Equus_caballus
ENSMUSG00000003360Ddx2310090.146ENSEEUG00000009658DDX2310090.146Erinaceus_europaeus
ENSMUSG00000003360Ddx2310082.545ENSELUG00000015358ddx239686.388Esox_lucius
ENSMUSG00000003360Ddx2310098.415ENSFCAG00000000082DDX2310098.415Felis_catus
ENSMUSG00000003360Ddx2310091.363ENSFALG00000000133DDX2310090.511Ficedula_albicollis
ENSMUSG00000003360Ddx2310098.171ENSFDAG00000017059DDX2310098.171Fukomys_damarensis
ENSMUSG00000003360Ddx2310083.922ENSFHEG00000017499ddx239091.818Fundulus_heteroclitus
ENSMUSG00000003360Ddx239683.736ENSGMOG00000009592ddx239385.927Gadus_morhua
ENSMUSG00000003360Ddx2310094.762ENSGALG00000032307DDX2310092.692Gallus_gallus
ENSMUSG00000003360Ddx239686.497ENSGAFG00000012366ddx239288.964Gambusia_affinis
ENSMUSG00000003360Ddx239486.050ENSGACG00000003024ddx239992.114Gasterosteus_aculeatus
ENSMUSG00000003360Ddx2310092.214ENSGAGG00000007790DDX2310091.849Gopherus_agassizii
ENSMUSG00000003360Ddx2310098.537ENSGGOG00000015252DDX23100100.000Gorilla_gorilla
ENSMUSG00000003360Ddx238690.935ENSHBUG00000011876ddx2310084.756Haplochromis_burtoni
ENSMUSG00000003360Ddx2310098.049ENSHGLG00000004292DDX2310098.049Heterocephalus_glaber_female
ENSMUSG00000003360Ddx2310098.049ENSHGLG00100017585DDX2310098.049Heterocephalus_glaber_male
ENSMUSG00000003360Ddx238392.082ENSHCOG00000019338ddx239288.560Hippocampus_comes
ENSMUSG00000003360Ddx239286.985ENSIPUG00000005247DDX2310084.447Ictalurus_punctatus
ENSMUSG00000003360Ddx2310098.415ENSSTOG00000004219DDX2310098.415Ictidomys_tridecemlineatus
ENSMUSG00000003360Ddx2310098.293ENSJJAG00000018994Ddx2310098.293Jaculus_jaculus
ENSMUSG00000003360Ddx239684.567ENSKMAG00000012060ddx2310084.063Kryptolebias_marmoratus
ENSMUSG00000003360Ddx239387.630ENSLBEG00000019475ddx239388.338Labrus_bergylta
ENSMUSG00000003360Ddx239291.910ENSLACG00000016977DDX239992.578Latimeria_chalumnae
ENSMUSG00000003360Ddx238989.821ENSLOCG00000007385ddx2310086.098Lepisosteus_oculatus
ENSMUSG00000003360Ddx2310098.171ENSLAFG00000014227DDX2310098.171Loxodonta_africana
ENSMUSG00000003360Ddx2310098.415ENSMFAG00000038666DDX2310098.415Macaca_fascicularis
ENSMUSG00000003360Ddx2310098.415ENSMMUG00000008432DDX23100100.000Macaca_mulatta
ENSMUSG00000003360Ddx2310081.585ENSMNEG00000045260-10081.585Macaca_nemestrina
ENSMUSG00000003360Ddx2310098.171ENSMNEG00000040016DDX2310098.171Macaca_nemestrina
ENSMUSG00000003360Ddx2310079.634ENSMLEG00000035096-10077.561Mandrillus_leucophaeus
ENSMUSG00000003360Ddx2310098.415ENSMLEG00000042846DDX2310098.415Mandrillus_leucophaeus
ENSMUSG00000003360Ddx2310085.036ENSMAMG00000024144ddx2310084.672Mastacembelus_armatus
ENSMUSG00000003360Ddx238690.935ENSMZEG00005026086ddx2310084.756Maylandia_zebra
ENSMUSG00000003360Ddx2310098.901ENSMAUG00000012336Ddx2310098.901Mesocricetus_auratus
ENSMUSG00000003360Ddx2310098.049ENSMICG00000017541DDX2310098.049Microcebus_murinus
ENSMUSG00000003360Ddx2310098.657ENSMOCG00000018987Ddx2310098.657Microtus_ochrogaster
ENSMUSG00000003360Ddx239681.505ENSMMOG00000012406ddx239583.558Mola_mola
ENSMUSG00000003360Ddx2310096.829ENSMODG00000009975DDX2310096.829Monodelphis_domestica
ENSMUSG00000003360Ddx239586.497ENSMALG00000022366ddx239288.441Monopterus_albus
ENSMUSG00000003360Ddx2310099.878MGP_CAROLIEiJ_G0020240Ddx2310099.878Mus_caroli
ENSMUSG00000003360Ddx2310099.878MGP_PahariEiJ_G0020243Ddx2310099.878Mus_pahari
ENSMUSG00000003360Ddx23100100.000MGP_SPRETEiJ_G0021137Ddx23100100.000Mus_spretus
ENSMUSG00000003360Ddx2310098.415ENSMPUG00000014739DDX2310098.415Mustela_putorius_furo
ENSMUSG00000003360Ddx2310098.049ENSMLUG00000011033-10098.049Myotis_lucifugus
ENSMUSG00000003360Ddx2310093.780ENSMLUG00000003683-10093.780Myotis_lucifugus
ENSMUSG00000003360Ddx2310098.171ENSNGAG00000019018Ddx2310098.171Nannospalax_galili
ENSMUSG00000003360Ddx238392.826ENSNBRG00000022928ddx2310082.075Neolamprologus_brichardi
ENSMUSG00000003360Ddx2310091.463ENSNLEG00000017864DDX2310091.463Nomascus_leucogenys
ENSMUSG00000003360Ddx2310096.585ENSMEUG00000009477DDX2310096.585Notamacropus_eugenii
ENSMUSG00000003360Ddx2310098.415ENSOPRG00000007170-10098.415Ochotona_princeps
ENSMUSG00000003360Ddx2310098.415ENSODEG00000003592DDX2310098.415Octodon_degus
ENSMUSG00000003360Ddx238690.935ENSONIG00000017048ddx2310084.775Oreochromis_niloticus
ENSMUSG00000003360Ddx2310098.171ENSOCUG00000001414DDX2310098.171Oryctolagus_cuniculus
ENSMUSG00000003360Ddx2310082.051ENSORLG00000012330ddx239287.449Oryzias_latipes
ENSMUSG00000003360Ddx2310082.173ENSORLG00020017586ddx239287.584Oryzias_latipes_hni
ENSMUSG00000003360Ddx238191.528ENSORLG00015012361ddx238891.667Oryzias_latipes_hsok
ENSMUSG00000003360Ddx2310084.690ENSOMEG00000006453ddx239288.664Oryzias_melastigma
ENSMUSG00000003360Ddx2310098.537ENSOGAG00000016813DDX2310098.537Otolemur_garnettii
ENSMUSG00000003360Ddx2310098.171ENSOARG00000019105DDX239098.171Ovis_aries
ENSMUSG00000003360Ddx2310098.537ENSPPAG00000037807DDX23100100.000Pan_paniscus
ENSMUSG00000003360Ddx2310071.376ENSPPAG00000038775-10070.366Pan_paniscus
ENSMUSG00000003360Ddx2310098.415ENSPPRG00000015345DDX2310098.415Panthera_pardus
ENSMUSG00000003360Ddx2310098.415ENSPTIG00000018873DDX2310098.415Panthera_tigris_altaica
ENSMUSG00000003360Ddx2310098.415ENSPTRG00000004887DDX23100100.000Pan_troglodytes
ENSMUSG00000003360Ddx2310074.878ENSPTRG00000051972-10074.146Pan_troglodytes
ENSMUSG00000003360Ddx2310098.415ENSPANG00000019459DDX239298.415Papio_anubis
ENSMUSG00000003360Ddx239386.038ENSPANG00000035074-10086.038Papio_anubis
ENSMUSG00000003360Ddx238988.889ENSPKIG00000024110ddx2310085.018Paramormyrops_kingsleyae
ENSMUSG00000003360Ddx2310080.657ENSPSIG00000002834DDX2310080.657Pelodiscus_sinensis
ENSMUSG00000003360Ddx2310080.098ENSPMGG00000010243ddx239385.115Periophthalmus_magnuspinnatus
ENSMUSG00000003360Ddx2310099.023ENSPEMG00000011305Ddx2310099.023Peromyscus_maniculatus_bairdii
ENSMUSG00000003360Ddx238384.919ENSPMAG00000008625ddx239981.023Petromyzon_marinus
ENSMUSG00000003360Ddx2310096.463ENSPCIG00000027691DDX2310096.463Phascolarctos_cinereus
ENSMUSG00000003360Ddx239584.942ENSPFOG00000012159ddx239189.353Poecilia_formosa
ENSMUSG00000003360Ddx239586.100ENSPLAG00000005052ddx239289.353Poecilia_latipinna
ENSMUSG00000003360Ddx239685.824ENSPMEG00000015385ddx239289.353Poecilia_mexicana
ENSMUSG00000003360Ddx239586.990ENSPREG00000007074ddx239289.367Poecilia_reticulata
ENSMUSG00000003360Ddx2310098.537ENSPPYG00000004468DDX239798.537Pongo_abelii
ENSMUSG00000003360Ddx2310093.902ENSPCAG00000002016DDX2310093.902Procavia_capensis
ENSMUSG00000003360Ddx2310098.415ENSPCOG00000025915DDX23100100.000Propithecus_coquereli
ENSMUSG00000003360Ddx2310098.537ENSPVAG00000009818DDX2310098.537Pteropus_vampyrus
ENSMUSG00000003360Ddx2310081.563ENSPNYG00000021038ddx239385.386Pundamilia_nyererei
ENSMUSG00000003360Ddx238290.963ENSPNAG00000019203ddx238992.121Pygocentrus_nattereri
ENSMUSG00000003360Ddx2310099.878ENSRNOG00000060154Ddx2310099.878Rattus_norvegicus
ENSMUSG00000003360Ddx2310079.634ENSRBIG00000036337-10079.268Rhinopithecus_bieti
ENSMUSG00000003360Ddx2310085.610ENSRBIG00000040362DDX2310085.488Rhinopithecus_bieti
ENSMUSG00000003360Ddx2310077.195ENSRROG00000045747-10078.049Rhinopithecus_roxellana
ENSMUSG00000003360Ddx2310098.537ENSRROG00000028964DDX2310098.537Rhinopithecus_roxellana
ENSMUSG00000003360Ddx237037.245YDR243C-8138.848Saccharomyces_cerevisiae
ENSMUSG00000003360Ddx2310098.415ENSSBOG00000025799DDX2310098.415Saimiri_boliviensis_boliviensis
ENSMUSG00000003360Ddx2310096.585ENSSHAG00000006590DDX2310096.585Sarcophilus_harrisii
ENSMUSG00000003360Ddx238889.931ENSSFOG00015013273ddx2310085.976Scleropages_formosus
ENSMUSG00000003360Ddx2310082.260ENSSMAG00000000529ddx239287.015Scophthalmus_maximus
ENSMUSG00000003360Ddx2310084.775ENSSDUG00000022459ddx2310084.933Seriola_dumerili
ENSMUSG00000003360Ddx2310084.775ENSSLDG00000010453ddx2310084.933Seriola_lalandi_dorsalis
ENSMUSG00000003360Ddx2393100.000ENSSARG00000004534DDX2393100.000Sorex_araneus
ENSMUSG00000003360Ddx2310094.532ENSSPUG00000016044DDX2310093.431Sphenodon_punctatus
ENSMUSG00000003360Ddx238690.523ENSSPAG00000016482ddx239288.814Stegastes_partitus
ENSMUSG00000003360Ddx2310098.171ENSSSCG00000000176DDX2310098.171Sus_scrofa
ENSMUSG00000003360Ddx2310081.707ENSTRUG00000000455ddx239586.170Takifugu_rubripes
ENSMUSG00000003360Ddx2310094.268ENSTBEG00000016909DDX2310094.268Tupaia_belangeri
ENSMUSG00000003360Ddx2310091.951ENSTTRG00000004604DDX2310091.951Tursiops_truncatus
ENSMUSG00000003360Ddx2310098.415ENSUAMG00000027082DDX2310098.415Ursus_americanus
ENSMUSG00000003360Ddx2310098.415ENSUMAG00000006538DDX2310098.415Ursus_maritimus
ENSMUSG00000003360Ddx2310098.537ENSVVUG00000019648DDX2310098.537Vulpes_vulpes
ENSMUSG00000003360Ddx2310084.982ENSXETG00000009807ddx2310084.615Xenopus_tropicalis
ENSMUSG00000003360Ddx239683.780ENSXCOG00000011648ddx239387.821Xiphophorus_couchianus
ENSMUSG00000003360Ddx239586.862ENSXMAG00000017387ddx239289.233Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005634nucleus-ISOComponent
GO:0005682U5 snRNP-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent

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