EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003410 (Gene tree)
Gene ID: 15571
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|mHuC
Full Name: ELAV like RNA binding protein 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 37019 bases
Position: chr9:22015005-22052023
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000003501	RRM_5	PF13893.6	5.3e-13	1	2
ENSMUSP00000003501	RRM_5	PF13893.6	5.3e-13	2	2
ENSMUSP00000149816	RRM_5	PF13893.6	3.9e-06	1	1
ENSMUSP00000003501	RRM_1	PF00076.22	6.9e-64	1	3
ENSMUSP00000003501	RRM_1	PF00076.22	6.9e-64	2	3
ENSMUSP00000003501	RRM_1	PF00076.22	6.9e-64	3	3
ENSMUSP00000149816	RRM_1	PF00076.22	3.7e-41	1	2
ENSMUSP00000149816	RRM_1	PF00076.22	3.7e-41	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000213700	-	397	-	ENSMUSP00000150771	132 (aa)	-	A0A1L1SUG6
ENSMUST00000215901	-	3037	-	ENSMUSP00000149816	250 (aa)	-	A0A1L1SS95
ENSMUST00000003501	-	5014	XM_006510021	ENSMUSP00000003501	367 (aa)	XP_006510084	Q60900

Gene Model

Click here to download ENSMUSG00000003410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003410's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000003410	Elavl3	90	66.867	ENSMUSG00000040028	Elavl1	95	66.265
ENSMUSG00000003410	Elavl3	90	36.145	ENSMUSG00000090919	Pabpc4l	96	36.145
ENSMUSG00000003410	Elavl3	99	80.000	ENSMUSG00000008489	Elavl2	100	79.292
ENSMUSG00000003410	Elavl3	94	34.234	ENSMUSG00000028137	Celf3	98	35.632
ENSMUSG00000003410	Elavl3	67	35.632	ENSMUSG00000040043	Rbms2	50	36.667
ENSMUSG00000003410	Elavl3	67	36.207	ENSMUSG00000026970	Rbms1	51	34.434
ENSMUSG00000003410	Elavl3	72	33.708	ENSMUSG00000031134	Rbmx	86	33.708
ENSMUSG00000003410	Elavl3	100	81.467	ENSMUSG00000028546	Elavl4	99	79.893
ENSMUSG00000003410	Elavl3	92	36.145	ENSMUSG00000022283	Pabpc1	91	30.172
ENSMUSG00000003410	Elavl3	62	37.500	ENSMUSG00000045193	Cirbp	79	37.500
ENSMUSG00000003410	Elavl3	73	40.741	ENSMUSG00000002107	Celf2	82	34.667
ENSMUSG00000003410	Elavl3	80	30.488	ENSMUSG00000054582	Pabpc1l	63	38.889
ENSMUSG00000003410	Elavl3	90	34.940	ENSMUSG00000051732	Pabpc2	61	34.940
ENSMUSG00000003410	Elavl3	80	41.975	ENSMUSG00000032297	Celf6	57	42.308
ENSMUSG00000003410	Elavl3	70	39.506	ENSMUSG00000024268	Celf4	67	39.744
ENSMUSG00000003410	Elavl3	71	42.391	ENSMUSG00000005506	Celf1	57	43.590
ENSMUSG00000003410	Elavl3	70	30.000	ENSMUSG00000034818	Celf5	91	31.765
ENSMUSG00000003410	Elavl3	90	37.179	ENSMUSG00000071337	Tia1	98	31.169
ENSMUSG00000003410	Elavl3	90	37.179	ENSMUSG00000030846	Tial1	73	37.179
ENSMUSG00000003410	Elavl3	92	36.145	ENSMUSG00000046173	Pabpc6	61	36.145
ENSMUSG00000003410	Elavl3	64	30.519	ENSMUSG00000035275	Raver2	50	30.519
ENSMUSG00000003410	Elavl3	67	37.931	ENSMUSG00000039607	Rbms3	70	38.562

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003410	Elavl3	100	99.455	ENSG00000196361	ELAVL3	100	99.455	Homo_sapiens
ENSMUSG00000003410	Elavl3	99	84.890	ENSAPOG00000017565	elavl3	99	83.791	Acanthochromis_polyacanthus
ENSMUSG00000003410	Elavl3	99	95.355	ENSAMEG00000010487	ELAVL3	100	95.355	Ailuropoda_melanoleuca
ENSMUSG00000003410	Elavl3	99	84.890	ENSACIG00000024190	elavl3	99	83.791	Amphilophus_citrinellus
ENSMUSG00000003410	Elavl3	100	89.200	ENSAOCG00000005054	elavl3	100	86.649	Amphiprion_ocellaris
ENSMUSG00000003410	Elavl3	100	89.200	ENSAPEG00000011145	elavl3	100	86.649	Amphiprion_percula
ENSMUSG00000003410	Elavl3	98	85.515	ENSATEG00000020941	elavl3	99	84.401	Anabas_testudineus
ENSMUSG00000003410	Elavl3	98	90.283	ENSACAG00000016958	ELAVL3	93	88.398	Anolis_carolinensis
ENSMUSG00000003410	Elavl3	100	99.200	ENSANAG00000030798	ELAVL3	100	97.275	Aotus_nancymaae
ENSMUSG00000003410	Elavl3	99	84.848	ENSACLG00000018260	elavl3	99	83.747	Astatotilapia_calliptera
ENSMUSG00000003410	Elavl3	100	88.556	ENSAMXG00000040498	elavl3	100	87.466	Astyanax_mexicanus
ENSMUSG00000003410	Elavl3	100	98.008	ENSBTAG00000014412	ELAVL3	100	97.003	Bos_taurus
ENSMUSG00000003410	Elavl3	100	99.455	ENSCJAG00000005589	ELAVL3	100	99.455	Callithrix_jacchus
ENSMUSG00000003410	Elavl3	100	99.183	ENSCAFG00000017350	ELAVL3	100	99.183	Canis_familiaris
ENSMUSG00000003410	Elavl3	99	98.785	ENSCAFG00020004614	ELAVL3	100	97.019	Canis_lupus_dingo
ENSMUSG00000003410	Elavl3	99	98.901	ENSCHIG00000003436	ELAVL3	100	98.901	Capra_hircus
ENSMUSG00000003410	Elavl3	99	98.907	ENSTSYG00000036621	ELAVL3	100	98.907	Carlito_syrichta
ENSMUSG00000003410	Elavl3	89	82.716	ENSCAPG00000017620	ELAVL3	99	82.716	Cavia_aperea
ENSMUSG00000003410	Elavl3	89	82.716	ENSCPOG00000001793	ELAVL3	99	82.716	Cavia_porcellus
ENSMUSG00000003410	Elavl3	100	99.455	ENSCCAG00000034350	ELAVL3	100	99.455	Cebus_capucinus
ENSMUSG00000003410	Elavl3	100	99.455	ENSCATG00000044086	ELAVL3	100	99.455	Cercocebus_atys
ENSMUSG00000003410	Elavl3	100	99.183	ENSCLAG00000016404	ELAVL3	100	99.183	Chinchilla_lanigera
ENSMUSG00000003410	Elavl3	92	99.130	ENSCSAG00000006755	ELAVL3	100	99.130	Chlorocebus_sabaeus
ENSMUSG00000003410	Elavl3	100	88.889	ENSCPBG00000023982	ELAVL3	100	85.870	Chrysemys_picta_bellii
ENSMUSG00000003410	Elavl3	100	99.455	ENSCANG00000038728	ELAVL3	100	99.455	Colobus_angolensis_palliatus
ENSMUSG00000003410	Elavl3	100	100.000	ENSCGRG00001018927	Elavl3	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000003410	Elavl3	100	99.728	ENSCGRG00000007158	Elavl3	100	99.728	Cricetulus_griseus_crigri
ENSMUSG00000003410	Elavl3	100	84.196	ENSCSEG00000021095	elavl3	100	83.106	Cynoglossus_semilaevis
ENSMUSG00000003410	Elavl3	100	89.200	ENSCVAG00000014060	elavl3	100	86.649	Cyprinodon_variegatus
ENSMUSG00000003410	Elavl3	100	89.600	ENSDARG00000014420	elavl3	98	93.252	Danio_rerio
ENSMUSG00000003410	Elavl3	99	98.626	ENSDORG00000002538	Elavl3	100	98.626	Dipodomys_ordii
ENSMUSG00000003410	Elavl3	51	99.237	ENSETEG00000000164	-	57	99.237	Echinops_telfairi
ENSMUSG00000003410	Elavl3	100	99.183	ENSEASG00005004561	ELAVL3	100	99.183	Equus_asinus_asinus
ENSMUSG00000003410	Elavl3	100	98.800	ENSECAG00000020594	ELAVL3	100	98.800	Equus_caballus
ENSMUSG00000003410	Elavl3	100	86.104	ENSELUG00000023043	elavl3	100	85.014	Esox_lucius
ENSMUSG00000003410	Elavl3	100	99.183	ENSFCAG00000024763	ELAVL3	100	99.183	Felis_catus
ENSMUSG00000003410	Elavl3	94	98.734	ENSFDAG00000008449	ELAVL3	91	98.734	Fukomys_damarensis
ENSMUSG00000003410	Elavl3	100	84.469	ENSFHEG00000001675	elavl3	100	83.379	Fundulus_heteroclitus
ENSMUSG00000003410	Elavl3	100	89.600	ENSGMOG00000003760	elavl3	100	86.921	Gadus_morhua
ENSMUSG00000003410	Elavl3	88	74.803	ENSGALG00000047364	-	100	74.803	Gallus_gallus
ENSMUSG00000003410	Elavl3	57	87.013	ENSGALG00000054488	-	77	63.780	Gallus_gallus
ENSMUSG00000003410	Elavl3	99	89.069	ENSGAFG00000016015	elavl3	98	86.777	Gambusia_affinis
ENSMUSG00000003410	Elavl3	100	89.200	ENSGACG00000013839	elavl3	100	86.649	Gasterosteus_aculeatus
ENSMUSG00000003410	Elavl3	97	90.164	ENSGAGG00000016141	ELAVL3	100	90.164	Gopherus_agassizii
ENSMUSG00000003410	Elavl3	99	99.451	ENSGGOG00000008635	ELAVL3	100	99.451	Gorilla_gorilla
ENSMUSG00000003410	Elavl3	100	85.559	ENSHBUG00000020978	elavl3	100	84.469	Haplochromis_burtoni
ENSMUSG00000003410	Elavl3	100	99.455	ENSHGLG00000015199	ELAVL3	100	99.455	Heterocephalus_glaber_female
ENSMUSG00000003410	Elavl3	84	69.156	ENSHGLG00000019379	-	97	69.156	Heterocephalus_glaber_female
ENSMUSG00000003410	Elavl3	99	97.600	ENSHGLG00100011200	ELAVL3	100	98.281	Heterocephalus_glaber_male
ENSMUSG00000003410	Elavl3	99	89.558	ENSHCOG00000015894	elavl3	100	87.466	Hippocampus_comes
ENSMUSG00000003410	Elavl3	99	84.848	ENSIPUG00000013002	elavl3	96	88.559	Ictalurus_punctatus
ENSMUSG00000003410	Elavl3	100	99.455	ENSSTOG00000021111	ELAVL3	100	99.455	Ictidomys_tridecemlineatus
ENSMUSG00000003410	Elavl3	99	98.626	ENSJJAG00000023513	Elavl3	100	98.626	Jaculus_jaculus
ENSMUSG00000003410	Elavl3	99	89.157	ENSKMAG00000017412	elavl3	99	83.791	Kryptolebias_marmoratus
ENSMUSG00000003410	Elavl3	99	84.890	ENSLBEG00000008073	elavl3	100	82.124	Labrus_bergylta
ENSMUSG00000003410	Elavl3	100	88.556	ENSLOCG00000007647	elavl3	100	87.466	Lepisosteus_oculatus
ENSMUSG00000003410	Elavl3	99	98.365	ENSLAFG00000005013	ELAVL3	99	98.365	Loxodonta_africana
ENSMUSG00000003410	Elavl3	100	99.455	ENSMFAG00000003692	ELAVL3	100	99.455	Macaca_fascicularis
ENSMUSG00000003410	Elavl3	100	99.455	ENSMMUG00000020616	ELAVL3	100	99.455	Macaca_mulatta
ENSMUSG00000003410	Elavl3	100	99.183	ENSMNEG00000043973	ELAVL3	100	99.183	Macaca_nemestrina
ENSMUSG00000003410	Elavl3	94	91.429	ENSMLEG00000013976	ELAVL3	100	91.429	Mandrillus_leucophaeus
ENSMUSG00000003410	Elavl3	99	84.573	ENSMAMG00000011697	elavl3	99	83.471	Mastacembelus_armatus
ENSMUSG00000003410	Elavl3	100	89.200	ENSMZEG00005019053	elavl3	100	86.649	Maylandia_zebra
ENSMUSG00000003410	Elavl3	99	100.000	ENSMAUG00000016478	Elavl3	100	100.000	Mesocricetus_auratus
ENSMUSG00000003410	Elavl3	100	98.913	ENSMICG00000016528	ELAVL3	100	99.451	Microcebus_murinus
ENSMUSG00000003410	Elavl3	100	100.000	ENSMOCG00000002046	Elavl3	100	100.000	Microtus_ochrogaster
ENSMUSG00000003410	Elavl3	100	84.196	ENSMMOG00000012154	elavl3	99	83.106	Mola_mola
ENSMUSG00000003410	Elavl3	99	90.283	ENSMODG00000006653	ELAVL3	93	89.344	Monodelphis_domestica
ENSMUSG00000003410	Elavl3	99	89.069	ENSMALG00000016659	elavl3	99	86.813	Monopterus_albus
ENSMUSG00000003410	Elavl3	100	100.000	MGP_CAROLIEiJ_G0031894	Elavl3	100	100.000	Mus_caroli
ENSMUSG00000003410	Elavl3	100	99.728	MGP_PahariEiJ_G0014760	Elavl3	100	99.728	Mus_pahari
ENSMUSG00000003410	Elavl3	72	96.522	MGP_SPRETEiJ_G0033017	-	51	97.391	Mus_spretus
ENSMUSG00000003410	Elavl3	100	98.910	ENSMPUG00000005040	ELAVL3	100	98.910	Mustela_putorius_furo
ENSMUSG00000003410	Elavl3	99	98.093	ENSMLUG00000016320	ELAVL3	99	98.093	Myotis_lucifugus
ENSMUSG00000003410	Elavl3	100	99.455	ENSNGAG00000000968	Elavl3	100	99.455	Nannospalax_galili
ENSMUSG00000003410	Elavl3	99	89.069	ENSNBRG00000010319	elavl3	100	86.649	Neolamprologus_brichardi
ENSMUSG00000003410	Elavl3	99	93.956	ENSMEUG00000016706	ELAVL3	100	93.956	Notamacropus_eugenii
ENSMUSG00000003410	Elavl3	98	97.967	ENSOPRG00000007373	ELAVL3	100	97.976	Ochotona_princeps
ENSMUSG00000003410	Elavl3	100	99.455	ENSODEG00000015790	ELAVL3	100	99.455	Octodon_degus
ENSMUSG00000003410	Elavl3	99	89.069	ENSONIG00000001538	elavl3	99	86.813	Oreochromis_niloticus
ENSMUSG00000003410	Elavl3	90	95.000	ENSOANG00000015046	ELAVL3	96	95.000	Ornithorhynchus_anatinus
ENSMUSG00000003410	Elavl3	100	88.800	ENSORLG00000005379	elavl3	100	86.376	Oryzias_latipes
ENSMUSG00000003410	Elavl3	100	89.200	ENSORLG00020004570	elavl3	100	86.649	Oryzias_latipes_hni
ENSMUSG00000003410	Elavl3	100	88.400	ENSORLG00015000662	elavl3	98	87.465	Oryzias_latipes_hsok
ENSMUSG00000003410	Elavl3	100	84.469	ENSOMEG00000023959	elavl3	100	83.379	Oryzias_melastigma
ENSMUSG00000003410	Elavl3	100	99.455	ENSOGAG00000007072	ELAVL3	100	99.455	Otolemur_garnettii
ENSMUSG00000003410	Elavl3	100	98.910	ENSOARG00000018464	ELAVL3	100	98.910	Ovis_aries
ENSMUSG00000003410	Elavl3	100	99.455	ENSPPAG00000033972	ELAVL3	100	99.455	Pan_paniscus
ENSMUSG00000003410	Elavl3	100	99.183	ENSPPRG00000005151	ELAVL3	100	99.183	Panthera_pardus
ENSMUSG00000003410	Elavl3	94	98.718	ENSPTIG00000013610	ELAVL3	97	95.058	Panthera_tigris_altaica
ENSMUSG00000003410	Elavl3	100	99.455	ENSPTRG00000010506	ELAVL3	100	99.455	Pan_troglodytes
ENSMUSG00000003410	Elavl3	100	99.455	ENSPANG00000005849	ELAVL3	100	99.455	Papio_anubis
ENSMUSG00000003410	Elavl3	100	89.600	ENSPKIG00000016207	elavl3	100	86.921	Paramormyrops_kingsleyae
ENSMUSG00000003410	Elavl3	100	84.741	ENSPMGG00000002016	elavl3	100	83.651	Periophthalmus_magnuspinnatus
ENSMUSG00000003410	Elavl3	98	84.085	ENSPFOG00000007754	elavl3	100	83.024	Poecilia_formosa
ENSMUSG00000003410	Elavl3	98	85.515	ENSPLAG00000001547	elavl3	99	84.401	Poecilia_latipinna
ENSMUSG00000003410	Elavl3	98	85.515	ENSPMEG00000010156	elavl3	99	84.401	Poecilia_mexicana
ENSMUSG00000003410	Elavl3	100	89.200	ENSPREG00000006971	elavl3	100	86.649	Poecilia_reticulata
ENSMUSG00000003410	Elavl3	84	85.714	ENSPPYG00000009583	-	98	85.714	Pongo_abelii
ENSMUSG00000003410	Elavl3	84	100.000	ENSPCAG00000015952	ELAVL3	65	100.000	Procavia_capensis
ENSMUSG00000003410	Elavl3	100	99.455	ENSPCOG00000023781	ELAVL3	100	99.455	Propithecus_coquereli
ENSMUSG00000003410	Elavl3	100	99.183	ENSPVAG00000014893	ELAVL3	100	99.183	Pteropus_vampyrus
ENSMUSG00000003410	Elavl3	99	84.848	ENSPNYG00000013186	elavl3	97	83.747	Pundamilia_nyererei
ENSMUSG00000003410	Elavl3	100	88.556	ENSPNAG00000003633	elavl3	100	87.466	Pygocentrus_nattereri
ENSMUSG00000003410	Elavl3	100	100.000	ENSRNOG00000013752	Elavl3	100	100.000	Rattus_norvegicus
ENSMUSG00000003410	Elavl3	100	99.455	ENSRBIG00000034762	ELAVL3	100	99.455	Rhinopithecus_bieti
ENSMUSG00000003410	Elavl3	89	94.531	ENSRROG00000034305	ELAVL3	100	94.309	Rhinopithecus_roxellana
ENSMUSG00000003410	Elavl3	99	99.451	ENSSBOG00000030047	ELAVL3	100	99.451	Saimiri_boliviensis_boliviensis
ENSMUSG00000003410	Elavl3	92	94.348	ENSSHAG00000005583	ELAVL3	100	94.348	Sarcophilus_harrisii
ENSMUSG00000003410	Elavl3	100	89.600	ENSSFOG00015023630	elavl3	100	86.455	Scleropages_formosus
ENSMUSG00000003410	Elavl3	99	84.573	ENSSMAG00000004671	elavl3	99	83.471	Scophthalmus_maximus
ENSMUSG00000003410	Elavl3	99	84.890	ENSSDUG00000020708	elavl3	99	83.791	Seriola_dumerili
ENSMUSG00000003410	Elavl3	100	88.283	ENSSLDG00000013769	elavl3	100	87.193	Seriola_lalandi_dorsalis
ENSMUSG00000003410	Elavl3	99	89.041	ENSSARG00000005949	ELAVL3	100	89.041	Sorex_araneus
ENSMUSG00000003410	Elavl3	99	84.890	ENSSPAG00000000990	elavl3	99	83.791	Stegastes_partitus
ENSMUSG00000003410	Elavl3	100	99.183	ENSSSCG00000013617	ELAVL3	100	99.183	Sus_scrofa
ENSMUSG00000003410	Elavl3	98	85.515	ENSTRUG00000010719	elavl3	99	84.401	Takifugu_rubripes
ENSMUSG00000003410	Elavl3	99	88.000	ENSTNIG00000018572	elavl3	99	86.104	Tetraodon_nigroviridis
ENSMUSG00000003410	Elavl3	94	98.718	ENSTBEG00000006133	ELAVL3	100	94.190	Tupaia_belangeri
ENSMUSG00000003410	Elavl3	100	98.910	ENSTTRG00000001789	ELAVL3	100	98.910	Tursiops_truncatus
ENSMUSG00000003410	Elavl3	99	95.604	ENSUAMG00000000405	ELAVL3	98	95.604	Ursus_americanus
ENSMUSG00000003410	Elavl3	95	97.468	ENSUMAG00000019546	ELAVL3	88	94.137	Ursus_maritimus
ENSMUSG00000003410	Elavl3	100	98.406	ENSVVUG00000023733	ELAVL3	100	97.275	Vulpes_vulpes
ENSMUSG00000003410	Elavl3	99	86.649	ENSXETG00000016741	elavl3	99	85.559	Xenopus_tropicalis
ENSMUSG00000003410	Elavl3	100	84.469	ENSXMAG00000018287	elavl3	100	83.379	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0017091	AU-rich element binding	10734193.	IDA	Function
GO:0017091	AU-rich element binding	-	ISO	Function
GO:0030154	cell differentiation	-	IEA	Process