EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003435 (Gene tree)
Gene ID: 20924
Gene Symbol: Supt5
Alias: Spt5|Supt5h
Full Name: suppressor of Ty 5
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 23856 bases
Position: chr7:28314891-28338746
Accession: 1202400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000003527	KOW	PF00467.29	7.6e-29	1	1
ENSMUSP00000147164	KOW	PF00467.29	7.6e-29	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000208243	-	611	-	ENSMUSP00000147059	149 (aa)	-	A0A140LJ34
ENSMUST00000209141	-	3755	-	ENSMUSP00000147164	1082 (aa)	-	O55201
ENSMUST00000208367	-	2027	-	-	- (aa)	-	-
ENSMUST00000207563	-	3640	-	ENSMUSP00000146961	52 (aa)	-	A0A140LIU5
ENSMUST00000208726	-	718	-	-	- (aa)	-	-
ENSMUST00000207879	-	3096	-	-	- (aa)	-	-
ENSMUST00000003527	-	3513	XM_006539702	ENSMUSP00000003527	1082 (aa)	XP_006539765	O55201
ENSMUST00000209105	-	396	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000003435's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003435's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003435	Supt5	100	97.335	ENSG00000196235	SUPT5H	100	100.000	Homo_sapiens
ENSMUSG00000003435	Supt5	94	81.373	ENSAPOG00000012970	supt5h	96	81.471	Acanthochromis_polyacanthus
ENSMUSG00000003435	Supt5	100	97.335	ENSAMEG00000008382	SUPT5H	100	97.335	Ailuropoda_melanoleuca
ENSMUSG00000003435	Supt5	94	67.220	ENSACIG00000021245	supt5h	93	69.073	Amphilophus_citrinellus
ENSMUSG00000003435	Supt5	94	86.149	ENSAOCG00000001136	supt5h	96	84.946	Amphiprion_ocellaris
ENSMUSG00000003435	Supt5	94	81.649	ENSAPEG00000021060	supt5h	96	81.649	Amphiprion_percula
ENSMUSG00000003435	Supt5	94	88.114	ENSATEG00000002626	supt5h	98	86.163	Anabas_testudineus
ENSMUSG00000003435	Supt5	100	92.705	ENSACAG00000000375	SUPT5H	100	92.890	Anolis_carolinensis
ENSMUSG00000003435	Supt5	100	97.243	ENSANAG00000033469	SUPT5H	100	97.243	Aotus_nancymaae
ENSMUSG00000003435	Supt5	94	85.069	ENSACLG00000011374	supt5h	95	85.069	Astatotilapia_calliptera
ENSMUSG00000003435	Supt5	94	89.282	ENSAMXG00000009128	supt5h	99	87.049	Astyanax_mexicanus
ENSMUSG00000003435	Supt5	100	97.335	ENSBTAG00000010467	SUPT5H	100	97.335	Bos_taurus
ENSMUSG00000003435	Supt5	88	39.490	WBGene00005015	spt-5	90	39.388	Caenorhabditis_elegans
ENSMUSG00000003435	Supt5	100	97.335	ENSCJAG00000014182	SUPT5H	100	97.335	Callithrix_jacchus
ENSMUSG00000003435	Supt5	100	97.243	ENSCAFG00000005469	SUPT5H	100	97.243	Canis_familiaris
ENSMUSG00000003435	Supt5	99	93.785	ENSCAFG00020015732	SUPT5H	99	96.245	Canis_lupus_dingo
ENSMUSG00000003435	Supt5	100	97.335	ENSCHIG00000023821	SUPT5H	100	97.335	Capra_hircus
ENSMUSG00000003435	Supt5	98	95.664	ENSTSYG00000010636	SUPT5H	99	95.903	Carlito_syrichta
ENSMUSG00000003435	Supt5	98	95.390	ENSCAPG00000008285	SUPT5H	100	95.390	Cavia_aperea
ENSMUSG00000003435	Supt5	100	97.243	ENSCPOG00000011367	SUPT5H	100	97.243	Cavia_porcellus
ENSMUSG00000003435	Supt5	100	97.335	ENSCCAG00000034052	SUPT5H	100	97.335	Cebus_capucinus
ENSMUSG00000003435	Supt5	100	97.426	ENSCATG00000035589	SUPT5H	100	97.426	Cercocebus_atys
ENSMUSG00000003435	Supt5	100	97.151	ENSCLAG00000013796	SUPT5H	100	97.151	Chinchilla_lanigera
ENSMUSG00000003435	Supt5	100	97.426	ENSCSAG00000003826	SUPT5H	100	97.426	Chlorocebus_sabaeus
ENSMUSG00000003435	Supt5	99	93.253	ENSCPBG00000018792	SUPT5H	100	95.764	Chrysemys_picta_bellii
ENSMUSG00000003435	Supt5	94	58.530	ENSCING00000021624	-	93	61.156	Ciona_intestinalis
ENSMUSG00000003435	Supt5	99	60.885	ENSCSAVG00000000030	-	99	58.868	Ciona_savignyi
ENSMUSG00000003435	Supt5	100	97.426	ENSCANG00000043752	SUPT5H	100	97.426	Colobus_angolensis_palliatus
ENSMUSG00000003435	Supt5	100	98.710	ENSCGRG00001012522	Supt5	100	98.710	Cricetulus_griseus_chok1gshd
ENSMUSG00000003435	Supt5	98	98.867	ENSCGRG00000006779	Supt5	97	98.867	Cricetulus_griseus_crigri
ENSMUSG00000003435	Supt5	71	67.571	ENSCSEG00000017151	-	94	67.313	Cynoglossus_semilaevis
ENSMUSG00000003435	Supt5	94	80.545	ENSCSEG00000015699	supt5h	97	81.068	Cynoglossus_semilaevis
ENSMUSG00000003435	Supt5	94	87.132	ENSCVAG00000007501	supt5h	94	86.719	Cyprinodon_variegatus
ENSMUSG00000003435	Supt5	94	88.627	ENSDARG00000042724	supt5h	99	87.085	Danio_rerio
ENSMUSG00000003435	Supt5	96	97.135	ENSDNOG00000033920	SUPT5H	100	97.135	Dasypus_novemcinctus
ENSMUSG00000003435	Supt5	100	90.221	ENSDORG00000016582	Supt5	100	91.328	Dipodomys_ordii
ENSMUSG00000003435	Supt5	94	53.899	FBgn0040273	Spt5	90	54.106	Drosophila_melanogaster
ENSMUSG00000003435	Supt5	54	95.000	ENSETEG00000009497	-	54	95.000	Echinops_telfairi
ENSMUSG00000003435	Supt5	89	75.648	ENSEBUG00000011892	supt5h	99	75.440	Eptatretus_burgeri
ENSMUSG00000003435	Supt5	100	96.140	ENSEASG00005011861	SUPT5H	100	96.797	Equus_asinus_asinus
ENSMUSG00000003435	Supt5	100	96.232	ENSECAG00000013309	SUPT5H	100	97.571	Equus_caballus
ENSMUSG00000003435	Supt5	98	87.228	ENSEEUG00000012879	SUPT5H	97	86.778	Erinaceus_europaeus
ENSMUSG00000003435	Supt5	98	86.710	ENSELUG00000011402	supt5h	98	86.922	Esox_lucius
ENSMUSG00000003435	Supt5	100	97.335	ENSFCAG00000010744	SUPT5H	100	97.335	Felis_catus
ENSMUSG00000003435	Supt5	100	97.151	ENSFDAG00000015803	SUPT5H	100	97.151	Fukomys_damarensis
ENSMUSG00000003435	Supt5	94	85.447	ENSFHEG00000012497	supt5h	95	85.447	Fundulus_heteroclitus
ENSMUSG00000003435	Supt5	99	72.544	ENSGMOG00000003422	supt5h	93	74.027	Gadus_morhua
ENSMUSG00000003435	Supt5	94	81.323	ENSGACG00000004934	supt5h	95	81.854	Gasterosteus_aculeatus
ENSMUSG00000003435	Supt5	91	94.338	ENSGAGG00000019112	SUPT5H	99	95.871	Gopherus_agassizii
ENSMUSG00000003435	Supt5	100	97.335	ENSGGOG00000014425	SUPT5H	100	96.967	Gorilla_gorilla
ENSMUSG00000003435	Supt5	94	88.310	ENSHBUG00000017144	supt5h	94	88.310	Haplochromis_burtoni
ENSMUSG00000003435	Supt5	100	97.243	ENSHGLG00000018339	SUPT5H	100	97.243	Heterocephalus_glaber_female
ENSMUSG00000003435	Supt5	100	96.599	ENSHGLG00100017126	SUPT5H	100	96.599	Heterocephalus_glaber_male
ENSMUSG00000003435	Supt5	94	86.346	ENSHCOG00000004932	supt5h	94	86.444	Hippocampus_comes
ENSMUSG00000003435	Supt5	97	88.381	ENSIPUG00000007308	supt5h	99	86.611	Ictalurus_punctatus
ENSMUSG00000003435	Supt5	100	97.335	ENSSTOG00000026638	SUPT5H	100	97.335	Ictidomys_tridecemlineatus
ENSMUSG00000003435	Supt5	100	98.527	ENSJJAG00000022374	Supt5	100	98.527	Jaculus_jaculus
ENSMUSG00000003435	Supt5	94	84.262	ENSKMAG00000004401	supt5h	94	84.360	Kryptolebias_marmoratus
ENSMUSG00000003435	Supt5	100	89.299	ENSLACG00000008663	SUPT5H	100	89.207	Latimeria_chalumnae
ENSMUSG00000003435	Supt5	84	78.091	ENSLOCG00000014703	SUPT5H	87	91.292	Lepisosteus_oculatus
ENSMUSG00000003435	Supt5	100	92.216	ENSLAFG00000027736	SUPT5H	100	93.315	Loxodonta_africana
ENSMUSG00000003435	Supt5	100	97.426	ENSMFAG00000038707	SUPT5H	100	97.426	Macaca_fascicularis
ENSMUSG00000003435	Supt5	100	97.426	ENSMMUG00000019372	SUPT5H	100	97.426	Macaca_mulatta
ENSMUSG00000003435	Supt5	100	97.426	ENSMNEG00000041553	SUPT5H	100	97.426	Macaca_nemestrina
ENSMUSG00000003435	Supt5	100	97.426	ENSMLEG00000036432	SUPT5H	100	97.426	Mandrillus_leucophaeus
ENSMUSG00000003435	Supt5	94	87.733	ENSMAMG00000019715	supt5h	94	88.211	Mastacembelus_armatus
ENSMUSG00000003435	Supt5	94	88.137	ENSMZEG00005024864	supt5h	94	88.137	Maylandia_zebra
ENSMUSG00000003435	Supt5	94	95.294	ENSMGAG00000012449	SUPT5H	100	92.897	Meleagris_gallopavo
ENSMUSG00000003435	Supt5	100	93.813	ENSMAUG00000009006	Supt5	100	93.906	Mesocricetus_auratus
ENSMUSG00000003435	Supt5	100	97.518	ENSMICG00000006115	SUPT5H	100	97.518	Microcebus_murinus
ENSMUSG00000003435	Supt5	100	99.077	ENSMOCG00000012211	Supt5	100	99.077	Microtus_ochrogaster
ENSMUSG00000003435	Supt5	94	86.037	ENSMMOG00000009770	supt5h	97	85.337	Mola_mola
ENSMUSG00000003435	Supt5	95	88.510	ENSMODG00000013570	SUPT5H	99	88.867	Monodelphis_domestica
ENSMUSG00000003435	Supt5	99	85.978	ENSMALG00000017833	supt5h	96	86.739	Monopterus_albus
ENSMUSG00000003435	Supt5	100	99.723	MGP_CAROLIEiJ_G0029441	Supt5	100	99.723	Mus_caroli
ENSMUSG00000003435	Supt5	100	99.446	MGP_PahariEiJ_G0012677	Supt5	100	99.446	Mus_pahari
ENSMUSG00000003435	Supt5	100	99.815	MGP_SPRETEiJ_G0030539	Supt5	100	99.815	Mus_spretus
ENSMUSG00000003435	Supt5	100	97.335	ENSMPUG00000017721	SUPT5H	100	97.335	Mustela_putorius_furo
ENSMUSG00000003435	Supt5	100	90.516	ENSMLUG00000008079	-	95	92.969	Myotis_lucifugus
ENSMUSG00000003435	Supt5	100	96.878	ENSMLUG00000013886	-	100	96.878	Myotis_lucifugus
ENSMUSG00000003435	Supt5	100	99.078	ENSNGAG00000022458	Supt5	100	99.078	Nannospalax_galili
ENSMUSG00000003435	Supt5	80	80.867	ENSNBRG00000005030	supt5h	71	80.867	Neolamprologus_brichardi
ENSMUSG00000003435	Supt5	99	90.176	ENSNLEG00000014365	SUPT5H	96	95.020	Nomascus_leucogenys
ENSMUSG00000003435	Supt5	93	89.851	ENSMEUG00000016423	SUPT5H	99	90.020	Notamacropus_eugenii
ENSMUSG00000003435	Supt5	97	92.734	ENSOPRG00000016844	SUPT5H	100	92.639	Ochotona_princeps
ENSMUSG00000003435	Supt5	100	97.059	ENSODEG00000016445	SUPT5H	100	97.059	Octodon_degus
ENSMUSG00000003435	Supt5	94	88.114	ENSONIG00000001100	supt5h	94	88.114	Oreochromis_niloticus
ENSMUSG00000003435	Supt5	81	91.156	ENSOANG00000008175	SUPT5H	100	90.476	Ornithorhynchus_anatinus
ENSMUSG00000003435	Supt5	100	96.863	ENSOCUG00000002155	SUPT5H	100	96.863	Oryctolagus_cuniculus
ENSMUSG00000003435	Supt5	94	86.726	ENSORLG00000000394	supt5h	94	86.726	Oryzias_latipes
ENSMUSG00000003435	Supt5	94	86.824	ENSORLG00020021680	supt5h	94	86.824	Oryzias_latipes_hni
ENSMUSG00000003435	Supt5	94	86.824	ENSORLG00015010686	supt5h	94	86.824	Oryzias_latipes_hsok
ENSMUSG00000003435	Supt5	100	97.151	ENSOGAG00000033979	SUPT5H	100	97.151	Otolemur_garnettii
ENSMUSG00000003435	Supt5	100	95.037	ENSOARG00000006174	SUPT5H	100	96.048	Ovis_aries
ENSMUSG00000003435	Supt5	100	97.426	ENSPPAG00000040180	SUPT5H	100	97.426	Pan_paniscus
ENSMUSG00000003435	Supt5	100	97.335	ENSPPRG00000009686	SUPT5H	100	97.335	Panthera_pardus
ENSMUSG00000003435	Supt5	100	97.335	ENSPTIG00000011633	SUPT5H	100	97.335	Panthera_tigris_altaica
ENSMUSG00000003435	Supt5	100	97.426	ENSPTRG00000010971	SUPT5H	100	97.426	Pan_troglodytes
ENSMUSG00000003435	Supt5	100	97.426	ENSPANG00000007383	SUPT5H	100	97.426	Papio_anubis
ENSMUSG00000003435	Supt5	94	88.791	ENSPKIG00000006261	supt5h	94	88.813	Paramormyrops_kingsleyae
ENSMUSG00000003435	Supt5	99	90.659	ENSPSIG00000014117	SUPT5H	99	91.117	Pelodiscus_sinensis
ENSMUSG00000003435	Supt5	90	84.049	ENSPMGG00000020581	supt5h	96	84.049	Periophthalmus_magnuspinnatus
ENSMUSG00000003435	Supt5	100	99.170	ENSPEMG00000015730	Supt5	100	99.170	Peromyscus_maniculatus_bairdii
ENSMUSG00000003435	Supt5	99	78.846	ENSPMAG00000006913	supt5h	94	80.214	Petromyzon_marinus
ENSMUSG00000003435	Supt5	100	93.047	ENSPCIG00000010477	SUPT5H	100	93.779	Phascolarctos_cinereus
ENSMUSG00000003435	Supt5	92	84.623	ENSPFOG00000011126	supt5h	94	87.196	Poecilia_formosa
ENSMUSG00000003435	Supt5	94	87.426	ENSPLAG00000013092	supt5h	94	87.525	Poecilia_latipinna
ENSMUSG00000003435	Supt5	87	87.779	ENSPMEG00000020479	supt5h	92	87.885	Poecilia_mexicana
ENSMUSG00000003435	Supt5	99	83.318	ENSPREG00000006712	supt5h	94	84.941	Poecilia_reticulata
ENSMUSG00000003435	Supt5	100	96.048	ENSPPYG00000009968	SUPT5H	100	96.048	Pongo_abelii
ENSMUSG00000003435	Supt5	100	77.390	ENSPCAG00000010830	SUPT5H	100	80.055	Procavia_capensis
ENSMUSG00000003435	Supt5	100	97.610	ENSPCOG00000021231	SUPT5H	100	97.610	Propithecus_coquereli
ENSMUSG00000003435	Supt5	80	96.739	ENSPVAG00000011129	SUPT5H	80	96.739	Pteropus_vampyrus
ENSMUSG00000003435	Supt5	94	85.152	ENSPNYG00000009203	supt5h	95	85.152	Pundamilia_nyererei
ENSMUSG00000003435	Supt5	94	82.024	ENSPNAG00000010925	supt5h	98	81.561	Pygocentrus_nattereri
ENSMUSG00000003435	Supt5	100	96.771	ENSRNOG00000032034	Supt5h	100	100.000	Rattus_norvegicus
ENSMUSG00000003435	Supt5	98	94.491	ENSRBIG00000039828	SUPT5H	94	95.898	Rhinopithecus_bieti
ENSMUSG00000003435	Supt5	100	97.426	ENSRROG00000019625	SUPT5H	100	97.426	Rhinopithecus_roxellana
ENSMUSG00000003435	Supt5	100	97.335	ENSSBOG00000022657	SUPT5H	100	97.335	Saimiri_boliviensis_boliviensis
ENSMUSG00000003435	Supt5	91	90.553	ENSSHAG00000009504	SUPT5H	100	91.357	Sarcophilus_harrisii
ENSMUSG00000003435	Supt5	94	89.096	ENSSFOG00015005973	supt5h	94	88.477	Scleropages_formosus
ENSMUSG00000003435	Supt5	87	87.002	ENSSMAG00000004503	supt5h	92	87.120	Scophthalmus_maximus
ENSMUSG00000003435	Supt5	94	88.224	ENSSDUG00000014520	supt5h	94	88.420	Seriola_dumerili
ENSMUSG00000003435	Supt5	94	88.149	ENSSLDG00000008112	supt5h	97	86.386	Seriola_lalandi_dorsalis
ENSMUSG00000003435	Supt5	55	97.101	ENSSARG00000000997	-	64	97.101	Sorex_araneus
ENSMUSG00000003435	Supt5	91	91.030	ENSSPUG00000011434	SUPT5H	95	91.095	Sphenodon_punctatus
ENSMUSG00000003435	Supt5	94	87.819	ENSSPAG00000010429	supt5h	94	87.917	Stegastes_partitus
ENSMUSG00000003435	Supt5	99	93.560	ENSSSCG00000023556	SUPT5H	99	93.560	Sus_scrofa
ENSMUSG00000003435	Supt5	94	86.136	ENSTRUG00000002370	supt5h	94	86.136	Takifugu_rubripes
ENSMUSG00000003435	Supt5	94	87.059	ENSTNIG00000011178	supt5h	94	86.914	Tetraodon_nigroviridis
ENSMUSG00000003435	Supt5	66	83.101	ENSTBEG00000017617	SUPT5H	94	84.047	Tupaia_belangeri
ENSMUSG00000003435	Supt5	100	96.415	ENSTTRG00000003573	SUPT5H	100	96.415	Tursiops_truncatus
ENSMUSG00000003435	Supt5	100	97.335	ENSUAMG00000020014	SUPT5H	100	97.335	Ursus_americanus
ENSMUSG00000003435	Supt5	100	95.120	ENSUMAG00000019558	SUPT5H	100	95.120	Ursus_maritimus
ENSMUSG00000003435	Supt5	90	97.760	ENSVVUG00000006193	SUPT5H	93	97.760	Vulpes_vulpes
ENSMUSG00000003435	Supt5	99	88.111	ENSXETG00000002888	supt5h	99	88.203	Xenopus_tropicalis
ENSMUSG00000003435	Supt5	99	82.900	ENSXMAG00000004169	supt5h	94	84.691	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0003682	chromatin binding	21670248.	IDA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	-	ISO	Process
GO:0016239	positive regulation of macroautophagy	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0032044	DSIF complex	21873635.	IBA	Component
GO:0032044	DSIF complex	-	ISO	Component
GO:0032784	regulation of DNA-templated transcription, elongation	-	IEA	Process
GO:0032785	negative regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:1900364	negative regulation of mRNA polyadenylation	-	ISO	Process