EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003660 (Gene tree)
Gene ID: 320632
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|HELIC2|U5-200KD
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 32066 bases
Position: chr2:127208386-127240451
Accession: 2444401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000099509	ResIII	PF04851.15	4e-25	1	2
ENSMUSP00000099509	ResIII	PF04851.15	4e-25	2	2
ENSMUSP00000099509	DEAD	PF00270.29	5.2e-52	1	2
ENSMUSP00000099509	DEAD	PF00270.29	5.2e-52	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000142327	-	2923	-	-	- (aa)	-	-
ENSMUST00000103220	-	6745	XM_017319022	ENSMUSP00000099509	2136 (aa)	XP_017174511	Q6P4T2
ENSMUST00000140868	-	593	-	-	- (aa)	-	-
ENSMUST00000143481	-	722	-	-	- (aa)	-	-
ENSMUST00000131435	-	733	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000003660's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003660's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000003660	Snrnp200	86	42.051	ENSMUSG00000038774	Ascc3	81	44.301
ENSMUSG00000003660	Snrnp200	76	32.173	ENSMUSG00000043410	Hfm1	59	32.442

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003660	Snrnp200	100	99.672	ENSG00000144028	SNRNP200	100	99.672	Homo_sapiens
ENSMUSG00000003660	Snrnp200	99	90.841	ENSAPOG00000010223	snrnp200	99	90.730	Acanthochromis_polyacanthus
ENSMUSG00000003660	Snrnp200	100	99.625	ENSAMEG00000008996	SNRNP200	100	99.625	Ailuropoda_melanoleuca
ENSMUSG00000003660	Snrnp200	97	90.203	ENSACIG00000001764	snrnp200	98	90.203	Amphilophus_citrinellus
ENSMUSG00000003660	Snrnp200	99	90.747	ENSAOCG00000024593	snrnp200	100	89.989	Amphiprion_ocellaris
ENSMUSG00000003660	Snrnp200	97	90.043	ENSAPEG00000012554	snrnp200	100	90.043	Amphiprion_percula
ENSMUSG00000003660	Snrnp200	99	90.606	ENSATEG00000022522	snrnp200	99	90.496	Anabas_testudineus
ENSMUSG00000003660	Snrnp200	99	97.501	ENSAPLG00000004313	SNRNP200	100	97.501	Anas_platyrhynchos
ENSMUSG00000003660	Snrnp200	99	97.264	ENSACAG00000000434	SNRNP200	100	97.264	Anolis_carolinensis
ENSMUSG00000003660	Snrnp200	100	95.061	ENSANAG00000036625	SNRNP200	100	95.569	Aotus_nancymaae
ENSMUSG00000003660	Snrnp200	99	90.465	ENSACLG00000011188	snrnp200	99	90.356	Astatotilapia_calliptera
ENSMUSG00000003660	Snrnp200	99	90.559	ENSAMXG00000005684	snrnp200	99	90.449	Astyanax_mexicanus
ENSMUSG00000003660	Snrnp200	100	99.064	ENSBTAG00000000848	SNRNP200	100	99.064	Bos_taurus
ENSMUSG00000003660	Snrnp200	100	99.625	ENSCJAG00000007514	SNRNP200	100	99.625	Callithrix_jacchus
ENSMUSG00000003660	Snrnp200	100	98.833	ENSCAFG00020019979	SNRNP200	100	99.825	Canis_lupus_dingo
ENSMUSG00000003660	Snrnp200	100	99.251	ENSCHIG00000020611	SNRNP200	100	99.251	Capra_hircus
ENSMUSG00000003660	Snrnp200	100	99.672	ENSTSYG00000010467	SNRNP200	100	99.672	Carlito_syrichta
ENSMUSG00000003660	Snrnp200	99	99.295	ENSCAPG00000017234	SNRNP200	99	99.295	Cavia_aperea
ENSMUSG00000003660	Snrnp200	100	99.579	ENSCPOG00000006776	SNRNP200	100	99.579	Cavia_porcellus
ENSMUSG00000003660	Snrnp200	100	99.625	ENSCCAG00000033962	SNRNP200	100	99.625	Cebus_capucinus
ENSMUSG00000003660	Snrnp200	100	99.672	ENSCATG00000015790	SNRNP200	100	99.672	Cercocebus_atys
ENSMUSG00000003660	Snrnp200	100	99.438	ENSCLAG00000004116	SNRNP200	100	99.438	Chinchilla_lanigera
ENSMUSG00000003660	Snrnp200	100	99.625	ENSCSAG00000017369	SNRNP200	100	99.625	Chlorocebus_sabaeus
ENSMUSG00000003660	Snrnp200	75	98.802	ENSCHOG00000012981	-	59	98.802	Choloepus_hoffmanni
ENSMUSG00000003660	Snrnp200	100	97.522	ENSCPBG00000022571	SNRNP200	100	97.522	Chrysemys_picta_bellii
ENSMUSG00000003660	Snrnp200	99	76.553	ENSCING00000005082	-	99	76.693	Ciona_intestinalis
ENSMUSG00000003660	Snrnp200	100	94.208	ENSCANG00000033932	SNRNP200	100	99.652	Colobus_angolensis_palliatus
ENSMUSG00000003660	Snrnp200	100	99.813	ENSCGRG00001022610	Snrnp200	100	99.813	Cricetulus_griseus_chok1gshd
ENSMUSG00000003660	Snrnp200	100	99.252	ENSCGRG00000016472	Snrnp200	100	99.252	Cricetulus_griseus_crigri
ENSMUSG00000003660	Snrnp200	100	89.841	ENSCSEG00000016399	snrnp200	100	89.841	Cynoglossus_semilaevis
ENSMUSG00000003660	Snrnp200	100	85.581	ENSCVAG00000017631	snrnp200	99	85.581	Cyprinodon_variegatus
ENSMUSG00000003660	Snrnp200	100	90.309	ENSDARG00000077536	snrnp200	99	90.309	Danio_rerio
ENSMUSG00000003660	Snrnp200	100	98.034	ENSDNOG00000011227	SNRNP200	100	98.034	Dasypus_novemcinctus
ENSMUSG00000003660	Snrnp200	100	97.055	ENSDORG00000005861	Snrnp200	100	97.055	Dipodomys_ordii
ENSMUSG00000003660	Snrnp200	100	74.209	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
ENSMUSG00000003660	Snrnp200	95	99.311	ENSETEG00000000162	SNRNP200	74	99.311	Echinops_telfairi
ENSMUSG00000003660	Snrnp200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
ENSMUSG00000003660	Snrnp200	100	98.601	ENSEASG00005001884	SNRNP200	100	98.601	Equus_asinus_asinus
ENSMUSG00000003660	Snrnp200	100	99.719	ENSECAG00000019675	SNRNP200	100	99.719	Equus_caballus
ENSMUSG00000003660	Snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSMUSG00000003660	Snrnp200	99	90.888	ENSELUG00000018948	snrnp200	99	90.777	Esox_lucius
ENSMUSG00000003660	Snrnp200	100	99.672	ENSFCAG00000010699	SNRNP200	100	99.672	Felis_catus
ENSMUSG00000003660	Snrnp200	95	89.836	ENSFALG00000001368	-	95	91.964	Ficedula_albicollis
ENSMUSG00000003660	Snrnp200	100	99.391	ENSFDAG00000004683	SNRNP200	100	99.391	Fukomys_damarensis
ENSMUSG00000003660	Snrnp200	100	87.734	ENSFHEG00000003786	snrnp200	99	87.734	Fundulus_heteroclitus
ENSMUSG00000003660	Snrnp200	100	89.720	ENSGMOG00000004881	snrnp200	99	89.673	Gadus_morhua
ENSMUSG00000003660	Snrnp200	100	87.968	ENSGAFG00000010807	snrnp200	99	87.968	Gambusia_affinis
ENSMUSG00000003660	Snrnp200	100	89.958	ENSGACG00000011474	snrnp200	99	89.865	Gasterosteus_aculeatus
ENSMUSG00000003660	Snrnp200	95	97.532	ENSGAGG00000016069	SNRNP200	99	97.532	Gopherus_agassizii
ENSMUSG00000003660	Snrnp200	100	99.672	ENSGGOG00000005174	SNRNP200	100	99.672	Gorilla_gorilla
ENSMUSG00000003660	Snrnp200	97	87.727	ENSHBUG00000011322	snrnp200	99	87.774	Haplochromis_burtoni
ENSMUSG00000003660	Snrnp200	100	99.485	ENSHGLG00000006654	SNRNP200	100	99.485	Heterocephalus_glaber_female
ENSMUSG00000003660	Snrnp200	100	99.485	ENSHGLG00100018594	SNRNP200	100	99.485	Heterocephalus_glaber_male
ENSMUSG00000003660	Snrnp200	100	99.625	ENSSTOG00000016351	SNRNP200	100	99.625	Ictidomys_tridecemlineatus
ENSMUSG00000003660	Snrnp200	100	99.579	ENSJJAG00000023659	Snrnp200	100	99.579	Jaculus_jaculus
ENSMUSG00000003660	Snrnp200	100	87.494	ENSKMAG00000003665	snrnp200	99	87.494	Kryptolebias_marmoratus
ENSMUSG00000003660	Snrnp200	100	90.215	ENSLBEG00000021585	snrnp200	99	90.215	Labrus_bergylta
ENSMUSG00000003660	Snrnp200	82	94.722	ENSLACG00000000226	SNRNP200	99	94.722	Latimeria_chalumnae
ENSMUSG00000003660	Snrnp200	100	92.041	ENSLOCG00000015198	snrnp200	99	92.041	Lepisosteus_oculatus
ENSMUSG00000003660	Snrnp200	100	99.345	ENSLAFG00000015626	SNRNP200	100	99.345	Loxodonta_africana
ENSMUSG00000003660	Snrnp200	100	99.625	ENSMFAG00000040174	SNRNP200	100	99.625	Macaca_fascicularis
ENSMUSG00000003660	Snrnp200	100	99.625	ENSMMUG00000023261	SNRNP200	100	99.625	Macaca_mulatta
ENSMUSG00000003660	Snrnp200	100	99.579	ENSMNEG00000032398	SNRNP200	100	99.579	Macaca_nemestrina
ENSMUSG00000003660	Snrnp200	100	99.672	ENSMLEG00000019083	SNRNP200	100	99.672	Mandrillus_leucophaeus
ENSMUSG00000003660	Snrnp200	100	90.173	ENSMAMG00000007851	snrnp200	99	90.126	Mastacembelus_armatus
ENSMUSG00000003660	Snrnp200	97	87.727	ENSMZEG00005010787	snrnp200	99	87.774	Maylandia_zebra
ENSMUSG00000003660	Snrnp200	97	97.049	ENSMGAG00000001831	SNRNP200	100	97.049	Meleagris_gallopavo
ENSMUSG00000003660	Snrnp200	100	99.860	ENSMAUG00000011825	Snrnp200	100	99.860	Mesocricetus_auratus
ENSMUSG00000003660	Snrnp200	100	99.625	ENSMICG00000004710	SNRNP200	100	99.625	Microcebus_murinus
ENSMUSG00000003660	Snrnp200	100	97.285	ENSMOCG00000011814	Snrnp200	100	97.285	Microtus_ochrogaster
ENSMUSG00000003660	Snrnp200	99	88.962	ENSMMOG00000014167	snrnp200	99	88.858	Mola_mola
ENSMUSG00000003660	Snrnp200	100	98.736	ENSMODG00000008475	SNRNP200	100	98.736	Monodelphis_domestica
ENSMUSG00000003660	Snrnp200	99	90.700	ENSMALG00000001973	snrnp200	99	90.590	Monopterus_albus
ENSMUSG00000003660	Snrnp200	100	99.953	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.953	Mus_caroli
ENSMUSG00000003660	Snrnp200	100	99.953	MGP_PahariEiJ_G0025695	Snrnp200	100	99.953	Mus_pahari
ENSMUSG00000003660	Snrnp200	100	100.000	MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	Mus_spretus
ENSMUSG00000003660	Snrnp200	100	99.579	ENSMPUG00000008949	SNRNP200	100	99.579	Mustela_putorius_furo
ENSMUSG00000003660	Snrnp200	100	98.925	ENSMLUG00000010493	SNRNP200	100	98.925	Myotis_lucifugus
ENSMUSG00000003660	Snrnp200	100	95.225	ENSMLUG00000027511	-	100	95.225	Myotis_lucifugus
ENSMUSG00000003660	Snrnp200	100	99.766	ENSNGAG00000021993	Snrnp200	100	99.766	Nannospalax_galili
ENSMUSG00000003660	Snrnp200	90	90.261	ENSNBRG00000017960	snrnp200	98	90.261	Neolamprologus_brichardi
ENSMUSG00000003660	Snrnp200	100	95.026	ENSNLEG00000000025	SNRNP200	100	95.026	Nomascus_leucogenys
ENSMUSG00000003660	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSMUSG00000003660	Snrnp200	100	95.740	ENSOPRG00000015464	SNRNP200	100	95.740	Ochotona_princeps
ENSMUSG00000003660	Snrnp200	100	99.438	ENSODEG00000008366	SNRNP200	100	99.438	Octodon_degus
ENSMUSG00000003660	Snrnp200	99	90.465	ENSONIG00000010714	snrnp200	99	90.356	Oreochromis_niloticus
ENSMUSG00000003660	Snrnp200	100	99.532	ENSOCUG00000009864	SNRNP200	100	99.532	Oryctolagus_cuniculus
ENSMUSG00000003660	Snrnp200	100	90.262	ENSORLG00000012286	snrnp200	100	90.262	Oryzias_latipes
ENSMUSG00000003660	Snrnp200	100	90.309	ENSORLG00020004648	snrnp200	100	90.309	Oryzias_latipes_hni
ENSMUSG00000003660	Snrnp200	100	90.262	ENSORLG00015019114	snrnp200	100	90.288	Oryzias_latipes_hsok
ENSMUSG00000003660	Snrnp200	99	90.512	ENSOMEG00000011834	snrnp200	99	90.403	Oryzias_melastigma
ENSMUSG00000003660	Snrnp200	100	99.672	ENSOGAG00000006879	SNRNP200	100	99.672	Otolemur_garnettii
ENSMUSG00000003660	Snrnp200	100	98.222	ENSOARG00000013949	SNRNP200	100	98.222	Ovis_aries
ENSMUSG00000003660	Snrnp200	100	99.672	ENSPPAG00000041559	SNRNP200	100	99.672	Pan_paniscus
ENSMUSG00000003660	Snrnp200	100	99.672	ENSPPRG00000004435	SNRNP200	100	99.672	Panthera_pardus
ENSMUSG00000003660	Snrnp200	100	99.204	ENSPTIG00000006380	SNRNP200	100	99.204	Panthera_tigris_altaica
ENSMUSG00000003660	Snrnp200	100	99.672	ENSPTRG00000012230	SNRNP200	100	99.672	Pan_troglodytes
ENSMUSG00000003660	Snrnp200	100	99.625	ENSPANG00000006017	SNRNP200	100	99.625	Papio_anubis
ENSMUSG00000003660	Snrnp200	100	91.058	ENSPKIG00000014762	snrnp200	99	91.058	Paramormyrops_kingsleyae
ENSMUSG00000003660	Snrnp200	100	96.490	ENSPSIG00000008580	SNRNP200	100	96.490	Pelodiscus_sinensis
ENSMUSG00000003660	Snrnp200	100	98.736	ENSPCIG00000023050	SNRNP200	100	98.736	Phascolarctos_cinereus
ENSMUSG00000003660	Snrnp200	100	90.314	ENSPFOG00000015110	snrnp200	99	90.314	Poecilia_formosa
ENSMUSG00000003660	Snrnp200	97	90.165	ENSPLAG00000006711	snrnp200	99	90.165	Poecilia_latipinna
ENSMUSG00000003660	Snrnp200	97	90.110	ENSPMEG00000021166	snrnp200	99	90.110	Poecilia_mexicana
ENSMUSG00000003660	Snrnp200	100	90.403	ENSPREG00000008875	snrnp200	99	90.403	Poecilia_reticulata
ENSMUSG00000003660	Snrnp200	100	99.672	ENSPPYG00000012068	SNRNP200	100	99.672	Pongo_abelii
ENSMUSG00000003660	Snrnp200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSMUSG00000003660	Snrnp200	100	99.672	ENSPCOG00000024608	SNRNP200	100	99.672	Propithecus_coquereli
ENSMUSG00000003660	Snrnp200	96	99.320	ENSPVAG00000005860	SNRNP200	93	99.320	Pteropus_vampyrus
ENSMUSG00000003660	Snrnp200	99	85.948	ENSPNYG00000017476	snrnp200	99	85.854	Pundamilia_nyererei
ENSMUSG00000003660	Snrnp200	100	86.049	ENSPNAG00000010998	snrnp200	99	86.049	Pygocentrus_nattereri
ENSMUSG00000003660	Snrnp200	100	99.860	ENSRNOG00000012157	Snrnp200	100	99.860	Rattus_norvegicus
ENSMUSG00000003660	Snrnp200	100	99.672	ENSRBIG00000044690	-	100	99.672	Rhinopithecus_bieti
ENSMUSG00000003660	Snrnp200	100	99.672	ENSRROG00000037952	-	100	99.672	Rhinopithecus_roxellana
ENSMUSG00000003660	Snrnp200	100	99.625	ENSSBOG00000035471	SNRNP200	100	99.625	Saimiri_boliviensis_boliviensis
ENSMUSG00000003660	Snrnp200	97	98.645	ENSSHAG00000000758	SNRNP200	100	98.645	Sarcophilus_harrisii
ENSMUSG00000003660	Snrnp200	99	91.639	ENSSFOG00015018826	snrnp200	99	91.526	Scleropages_formosus
ENSMUSG00000003660	Snrnp200	99	90.418	ENSSMAG00000005463	snrnp200	99	90.309	Scophthalmus_maximus
ENSMUSG00000003660	Snrnp200	99	90.700	ENSSDUG00000021410	snrnp200	99	90.590	Seriola_dumerili
ENSMUSG00000003660	Snrnp200	99	90.653	ENSSLDG00000010884	snrnp200	99	90.543	Seriola_lalandi_dorsalis
ENSMUSG00000003660	Snrnp200	95	98.123	ENSSARG00000010728	SNRNP200	96	98.123	Sorex_araneus
ENSMUSG00000003660	Snrnp200	100	97.285	ENSSPUG00000003726	-	100	97.285	Sphenodon_punctatus
ENSMUSG00000003660	Snrnp200	99	90.747	ENSSPAG00000001842	snrnp200	99	90.637	Stegastes_partitus
ENSMUSG00000003660	Snrnp200	100	99.485	ENSSSCG00000008127	SNRNP200	100	99.485	Sus_scrofa
ENSMUSG00000003660	Snrnp200	99	87.730	ENSTGUG00000014475	-	100	87.730	Taeniopygia_guttata
ENSMUSG00000003660	Snrnp200	99	90.371	ENSTRUG00000001307	snrnp200	99	90.262	Takifugu_rubripes
ENSMUSG00000003660	Snrnp200	100	85.791	ENSTNIG00000004320	snrnp200	100	85.791	Tetraodon_nigroviridis
ENSMUSG00000003660	Snrnp200	82	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
ENSMUSG00000003660	Snrnp200	100	99.298	ENSTTRG00000004983	SNRNP200	100	99.298	Tursiops_truncatus
ENSMUSG00000003660	Snrnp200	75	92.636	ENSUAMG00000008395	-	95	92.636	Ursus_americanus
ENSMUSG00000003660	Snrnp200	100	99.672	ENSUMAG00000012385	SNRNP200	100	99.672	Ursus_maritimus
ENSMUSG00000003660	Snrnp200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSMUSG00000003660	Snrnp200	100	99.440	ENSVVUG00000026247	SNRNP200	100	99.440	Vulpes_vulpes
ENSMUSG00000003660	Snrnp200	100	94.250	ENSXETG00000001243	snrnp200	100	94.250	Xenopus_tropicalis
ENSMUSG00000003660	Snrnp200	97	90.418	ENSXMAG00000002058	snrnp200	98	90.418	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000388	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005682	U5 snRNP	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008026	ATP-dependent helicase activity	21873635.	IBA	Function
GO:0008026	ATP-dependent helicase activity	-	ISO	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component