EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003662 (Gene tree)
Gene ID: 26371
Gene Symbol: Ciao1
Alias: Wdr39
Full Name: cytosolic iron-sulfur protein assembly 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 6879 bases
Position: chr2:127240938-127247816
Accession: 1346998
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000134159	eIF2A	PF08662.11	0.00038	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000172636	-	409	-	ENSMUSP00000134199	51 (aa)	-	G3UYS4
ENSMUST00000174863	-	531	-	ENSMUSP00000134159	176 (aa)	-	G3UYN9
ENSMUST00000003759	-	3075	-	ENSMUSP00000003759	339 (aa)	-	Q99KN2
ENSMUST00000143575	-	581	-	-	- (aa)	-	-
ENSMUST00000174030	-	1109	-	ENSMUSP00000134189	233 (aa)	-	G3UYR5

Gene Model

Click here to download ENSMUSG00000003662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003662's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000003662	Ciao1	85	34.058	ENSMUSG00000034379	Wdr5b	85	34.058
ENSMUSG00000003662	Ciao1	91	36.082	ENSMUSG00000023345	Poc1a	87	33.663
ENSMUSG00000003662	Ciao1	84	32.331	ENSMUSG00000040688	Tbl3	55	30.714
ENSMUSG00000003662	Ciao1	91	36.735	ENSMUSG00000026917	Wdr5	90	36.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003662	Ciao1	96	62.874	ENSCING00000006781	-	99	62.874	Ciona_intestinalis
ENSMUSG00000003662	Ciao1	96	61.677	ENSCSAVG00000003355	-	99	61.677	Ciona_savignyi
ENSMUSG00000003662	Ciao1	99	96.571	ENSCGRG00001016622	Ciao1	99	96.571	Cricetulus_griseus_chok1gshd
ENSMUSG00000003662	Ciao1	94	79.518	ENSMZEG00005010812	ciao1	100	79.518	Maylandia_zebra
ENSMUSG00000003662	Ciao1	99	97.143	ENSMAUG00000021994	Ciao1	99	97.143	Mesocricetus_auratus
ENSMUSG00000003662	Ciao1	100	96.023	ENSMOCG00000009518	Ciao1	99	96.023	Microtus_ochrogaster
ENSMUSG00000003662	Ciao1	94	82.530	ENSMALG00000002097	ciao1	99	82.530	Monopterus_albus
ENSMUSG00000003662	Ciao1	100	99.432	MGP_CAROLIEiJ_G0024251	Ciao1	100	99.432	Mus_caroli
ENSMUSG00000003662	Ciao1	100	97.159	MGP_PahariEiJ_G0025696	Ciao1	100	97.159	Mus_pahari
ENSMUSG00000003662	Ciao1	100	100.000	MGP_SPRETEiJ_G0025171	Ciao1	100	100.000	Mus_spretus
ENSMUSG00000003662	Ciao1	99	96.571	ENSPEMG00000015800	Ciao1	99	96.571	Peromyscus_maniculatus_bairdii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003700	DNA-binding transcription factor activity	10438340.	TAS	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0006357	regulation of transcription by RNA polymerase II	10438340.	TAS	Process
GO:0007059	chromosome segregation	-	IEA	Process
GO:0016226	iron-sulfur cluster assembly	21873635.	IBA	Process
GO:0016226	iron-sulfur cluster assembly	-	ISO	Process
GO:0071817	MMXD complex	-	ISO	Component
GO:0097361	CIA complex	21873635.	IBA	Component
GO:0097361	CIA complex	-	ISO	Component
GO:0097428	protein maturation by iron-sulfur cluster transfer	-	ISO	Process