EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003848 (Gene tree)
Gene ID: 67619
Gene Symbol: Nob1
Alias: 1700021I09Rik|ART-4|Nob1p|Psmd8bp1
Full Name: NIN1/RPN12 binding protein 1 homolog
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 12566 bases
Position: chr8:107412486-107425051
Accession: 1914869
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000003946	NOB1_Zn_bind	PF08772.11	5.9e-31	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000003946	-	1658	-	ENSMUSP00000003946	403 (aa)	-	Q8BW10
ENSMUST00000163973	-	1427	-	-	- (aa)	-	-
ENSMUST00000169311	-	1255	-	ENSMUSP00000126868	159 (aa)	-	E9PW56
ENSMUST00000109273	-	426	-	-	- (aa)	-	-
ENSMUST00000076585	-	783	-	-	- (aa)	-	-
ENSMUST00000165266	-	476	-	ENSMUSP00000129298	62 (aa)	-	F6YBB8
ENSMUST00000163757	-	863	-	-	- (aa)	-	-
ENSMUST00000170796	-	2137	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000003848's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003848	Nob1	100	87.167	ENSG00000141101	NOB1	98	93.846	Homo_sapiens
ENSMUSG00000003848	Nob1	85	63.584	ENSAPOG00000008241	nob1	94	63.873	Acanthochromis_polyacanthus
ENSMUSG00000003848	Nob1	100	84.856	ENSAMEG00000006706	NOB1	99	84.135	Ailuropoda_melanoleuca
ENSMUSG00000003848	Nob1	99	62.619	ENSACIG00000001503	nob1	99	62.143	Amphilophus_citrinellus
ENSMUSG00000003848	Nob1	100	65.764	ENSAOCG00000006533	nob1	100	65.764	Amphiprion_ocellaris
ENSMUSG00000003848	Nob1	100	65.764	ENSAPEG00000000032	-	100	65.764	Amphiprion_percula
ENSMUSG00000003848	Nob1	100	65.764	ENSAPEG00000000029	nob1	100	65.764	Amphiprion_percula
ENSMUSG00000003848	Nob1	100	64.216	ENSATEG00000014585	nob1	100	64.706	Anabas_testudineus
ENSMUSG00000003848	Nob1	99	65.258	ENSACAG00000003697	NOB1	87	68.019	Anolis_carolinensis
ENSMUSG00000003848	Nob1	100	85.922	ENSANAG00000036611	NOB1	100	86.408	Aotus_nancymaae
ENSMUSG00000003848	Nob1	99	62.441	ENSACLG00000024897	nob1	99	61.972	Astatotilapia_calliptera
ENSMUSG00000003848	Nob1	95	56.573	ENSAMXG00000003642	nob1	100	58.451	Astyanax_mexicanus
ENSMUSG00000003848	Nob1	100	85.230	ENSBTAG00000020633	NOB1	100	85.472	Bos_taurus
ENSMUSG00000003848	Nob1	78	42.857	WBGene00021843	Y54E10BR.4	97	32.750	Caenorhabditis_elegans
ENSMUSG00000003848	Nob1	100	86.165	ENSCJAG00000015230	NOB1	100	86.408	Callithrix_jacchus
ENSMUSG00000003848	Nob1	100	85.507	ENSCAFG00000020251	NOB1	100	85.749	Canis_familiaris
ENSMUSG00000003848	Nob1	100	85.507	ENSCAFG00020020297	NOB1	100	85.749	Canis_lupus_dingo
ENSMUSG00000003848	Nob1	100	86.849	ENSCHIG00000027022	NOB1	100	86.849	Capra_hircus
ENSMUSG00000003848	Nob1	100	84.951	ENSTSYG00000003084	NOB1	100	86.165	Carlito_syrichta
ENSMUSG00000003848	Nob1	84	82.216	ENSCAPG00000015542	NOB1	100	82.799	Cavia_aperea
ENSMUSG00000003848	Nob1	100	83.619	ENSCPOG00000022538	NOB1	100	84.108	Cavia_porcellus
ENSMUSG00000003848	Nob1	100	86.265	ENSCCAG00000023773	NOB1	100	85.783	Cebus_capucinus
ENSMUSG00000003848	Nob1	100	85.956	ENSCATG00000039487	NOB1	100	85.956	Cercocebus_atys
ENSMUSG00000003848	Nob1	84	82.789	ENSCLAG00000005926	NOB1	100	82.789	Chinchilla_lanigera
ENSMUSG00000003848	Nob1	100	85.956	ENSCSAG00000004158	NOB1	100	85.714	Chlorocebus_sabaeus
ENSMUSG00000003848	Nob1	100	77.372	ENSCHOG00000011047	NOB1	100	76.156	Choloepus_hoffmanni
ENSMUSG00000003848	Nob1	100	71.765	ENSCPBG00000027035	NOB1	93	71.529	Chrysemys_picta_bellii
ENSMUSG00000003848	Nob1	99	48.894	ENSCING00000023441	-	99	48.889	Ciona_intestinalis
ENSMUSG00000003848	Nob1	99	47.393	ENSCSAVG00000009081	-	99	48.786	Ciona_savignyi
ENSMUSG00000003848	Nob1	100	92.308	ENSCGRG00001009255	Nob1	95	92.308	Cricetulus_griseus_chok1gshd
ENSMUSG00000003848	Nob1	100	92.308	ENSCGRG00000010869	Nob1	100	92.308	Cricetulus_griseus_crigri
ENSMUSG00000003848	Nob1	86	61.230	ENSCSEG00000019657	nob1	91	61.230	Cynoglossus_semilaevis
ENSMUSG00000003848	Nob1	99	59.310	ENSDARG00000016080	nob1	99	59.770	Danio_rerio
ENSMUSG00000003848	Nob1	100	85.158	ENSDNOG00000041643	NOB1	100	84.915	Dasypus_novemcinctus
ENSMUSG00000003848	Nob1	100	87.745	ENSDORG00000000483	Nob1	100	87.745	Dipodomys_ordii
ENSMUSG00000003848	Nob1	84	43.304	FBgn0030177	CG2972	98	34.989	Drosophila_melanogaster
ENSMUSG00000003848	Nob1	58	72.614	ENSETEG00000000011	-	58	73.029	Echinops_telfairi
ENSMUSG00000003848	Nob1	99	47.512	ENSEBUG00000004464	nob1	98	47.264	Eptatretus_burgeri
ENSMUSG00000003848	Nob1	100	85.577	ENSEASG00005021356	NOB1	84	85.337	Equus_asinus_asinus
ENSMUSG00000003848	Nob1	100	84.856	ENSECAG00000023748	NOB1	81	84.615	Equus_caballus
ENSMUSG00000003848	Nob1	67	69.751	ENSEEUG00000014384	NOB1	66	69.751	Erinaceus_europaeus
ENSMUSG00000003848	Nob1	99	60.592	ENSELUG00000016199	nob1	99	59.540	Esox_lucius
ENSMUSG00000003848	Nob1	100	86.957	ENSFCAG00000002958	NOB1	100	86.232	Felis_catus
ENSMUSG00000003848	Nob1	51	74.537	ENSFALG00000002747	NOB1	86	74.654	Ficedula_albicollis
ENSMUSG00000003848	Nob1	100	84.069	ENSFDAG00000009239	NOB1	100	83.088	Fukomys_damarensis
ENSMUSG00000003848	Nob1	61	57.034	ENSFHEG00000007657	nob1	53	68.116	Fundulus_heteroclitus
ENSMUSG00000003848	Nob1	99	65.414	ENSGMOG00000010638	nob1	98	65.414	Gadus_morhua
ENSMUSG00000003848	Nob1	100	61.827	ENSGALG00000000693	NOB1	100	63.700	Gallus_gallus
ENSMUSG00000003848	Nob1	100	55.895	ENSGAFG00000006104	nob1	100	57.018	Gambusia_affinis
ENSMUSG00000003848	Nob1	99	63.235	ENSGACG00000017552	nob1	99	63.971	Gasterosteus_aculeatus
ENSMUSG00000003848	Nob1	100	70.353	ENSGAGG00000003902	NOB1	100	70.118	Gopherus_agassizii
ENSMUSG00000003848	Nob1	100	86.925	ENSGGOG00000025456	NOB1	100	87.167	Gorilla_gorilla
ENSMUSG00000003848	Nob1	99	64.548	ENSHBUG00000002580	nob1	99	65.281	Haplochromis_burtoni
ENSMUSG00000003848	Nob1	100	83.575	ENSHGLG00000014260	NOB1	100	83.575	Heterocephalus_glaber_female
ENSMUSG00000003848	Nob1	100	84.841	ENSHGLG00100013978	NOB1	100	84.146	Heterocephalus_glaber_male
ENSMUSG00000003848	Nob1	99	61.151	ENSHCOG00000006699	nob1	99	61.151	Hippocampus_comes
ENSMUSG00000003848	Nob1	99	52.854	ENSIPUG00000007579	nob1	99	54.661	Ictalurus_punctatus
ENSMUSG00000003848	Nob1	100	89.163	ENSSTOG00000001204	NOB1	100	89.163	Ictidomys_tridecemlineatus
ENSMUSG00000003848	Nob1	100	85.575	ENSJJAG00000015543	Nob1	100	85.575	Jaculus_jaculus
ENSMUSG00000003848	Nob1	99	64.183	ENSKMAG00000018220	nob1	99	64.904	Kryptolebias_marmoratus
ENSMUSG00000003848	Nob1	100	68.059	ENSLBEG00000026375	nob1	100	68.550	Labrus_bergylta
ENSMUSG00000003848	Nob1	100	64.220	ENSLACG00000006973	NOB1	98	64.908	Latimeria_chalumnae
ENSMUSG00000003848	Nob1	99	59.101	ENSLOCG00000001411	nob1	99	59.326	Lepisosteus_oculatus
ENSMUSG00000003848	Nob1	100	84.578	ENSLAFG00000008978	NOB1	100	84.578	Loxodonta_africana
ENSMUSG00000003848	Nob1	100	86.165	ENSMFAG00000030131	NOB1	100	86.408	Macaca_fascicularis
ENSMUSG00000003848	Nob1	100	85.956	ENSMMUG00000006506	NOB1	100	85.956	Macaca_mulatta
ENSMUSG00000003848	Nob1	100	86.199	ENSMNEG00000028829	NOB1	100	79.661	Macaca_nemestrina
ENSMUSG00000003848	Nob1	100	86.199	ENSMLEG00000032913	NOB1	100	86.199	Mandrillus_leucophaeus
ENSMUSG00000003848	Nob1	67	58.503	ENSMZEG00005003827	-	89	57.483	Maylandia_zebra
ENSMUSG00000003848	Nob1	99	66.250	ENSMZEG00005028346	nob1	99	66.250	Maylandia_zebra
ENSMUSG00000003848	Nob1	63	68.635	ENSMGAG00000008675	NOB1	100	71.481	Meleagris_gallopavo
ENSMUSG00000003848	Nob1	100	90.074	ENSMAUG00000013554	Nob1	100	90.074	Mesocricetus_auratus
ENSMUSG00000003848	Nob1	100	86.199	ENSMICG00000012123	NOB1	100	86.199	Microcebus_murinus
ENSMUSG00000003848	Nob1	100	89.630	ENSMOCG00000010370	Nob1	100	90.370	Microtus_ochrogaster
ENSMUSG00000003848	Nob1	100	66.828	ENSMMOG00000002120	nob1	100	66.828	Mola_mola
ENSMUSG00000003848	Nob1	100	74.109	ENSMODG00000002677	NOB1	100	74.584	Monodelphis_domestica
ENSMUSG00000003848	Nob1	99	65.594	ENSMALG00000014580	nob1	100	65.594	Monopterus_albus
ENSMUSG00000003848	Nob1	100	98.272	MGP_CAROLIEiJ_G0031536	Nob1	98	98.272	Mus_caroli
ENSMUSG00000003848	Nob1	100	96.324	MGP_PahariEiJ_G0023136	Nob1	100	96.324	Mus_pahari
ENSMUSG00000003848	Nob1	100	98.284	MGP_SPRETEiJ_G0032654	Nob1	98	98.284	Mus_spretus
ENSMUSG00000003848	Nob1	100	85.024	ENSMPUG00000007483	NOB1	91	85.266	Mustela_putorius_furo
ENSMUSG00000003848	Nob1	100	85.610	ENSMLUG00000006667	NOB1	100	85.854	Myotis_lucifugus
ENSMUSG00000003848	Nob1	100	91.067	ENSNGAG00000008627	Nob1	100	91.067	Nannospalax_galili
ENSMUSG00000003848	Nob1	100	87.409	ENSNLEG00000005572	NOB1	100	87.651	Nomascus_leucogenys
ENSMUSG00000003848	Nob1	78	83.436	ENSOPRG00000006721	NOB1	100	82.462	Ochotona_princeps
ENSMUSG00000003848	Nob1	100	84.367	ENSODEG00000014376	NOB1	100	84.367	Octodon_degus
ENSMUSG00000003848	Nob1	99	60.682	ENSONIG00000003319	nob1	99	60.682	Oreochromis_niloticus
ENSMUSG00000003848	Nob1	84	84.195	ENSOCUG00000004400	NOB1	100	84.195	Oryctolagus_cuniculus
ENSMUSG00000003848	Nob1	100	66.585	ENSORLG00000018862	nob1	100	66.585	Oryzias_latipes
ENSMUSG00000003848	Nob1	100	65.534	ENSORLG00020014687	nob1	100	65.534	Oryzias_latipes_hni
ENSMUSG00000003848	Nob1	100	66.093	ENSORLG00015012156	nob1	100	66.093	Oryzias_latipes_hsok
ENSMUSG00000003848	Nob1	100	58.747	ENSOMEG00000022722	nob1	100	58.747	Oryzias_melastigma
ENSMUSG00000003848	Nob1	100	79.126	ENSOGAG00000004590	NOB1	100	78.883	Otolemur_garnettii
ENSMUSG00000003848	Nob1	100	84.504	ENSOARG00000003606	NOB1	100	84.988	Ovis_aries
ENSMUSG00000003848	Nob1	100	86.683	ENSPPAG00000040257	NOB1	100	86.925	Pan_paniscus
ENSMUSG00000003848	Nob1	98	81.425	ENSPPAG00000003317	-	100	81.425	Pan_paniscus
ENSMUSG00000003848	Nob1	100	86.232	ENSPPRG00000016949	NOB1	100	86.473	Panthera_pardus
ENSMUSG00000003848	Nob1	100	86.232	ENSPTIG00000011234	NOB1	100	86.473	Panthera_tigris_altaica
ENSMUSG00000003848	Nob1	100	86.683	ENSPTRG00000008285	NOB1	100	86.925	Pan_troglodytes
ENSMUSG00000003848	Nob1	100	85.714	ENSPANG00000015858	NOB1	100	85.956	Papio_anubis
ENSMUSG00000003848	Nob1	99	62.053	ENSPKIG00000020293	nob1	99	63.702	Paramormyrops_kingsleyae
ENSMUSG00000003848	Nob1	95	69.554	ENSPSIG00000012477	NOB1	98	68.715	Pelodiscus_sinensis
ENSMUSG00000003848	Nob1	99	63.861	ENSPMGG00000023476	nob1	100	64.851	Periophthalmus_magnuspinnatus
ENSMUSG00000003848	Nob1	100	91.400	ENSPEMG00000010995	Nob1	100	90.418	Peromyscus_maniculatus_bairdii
ENSMUSG00000003848	Nob1	51	85.784	ENSPCIG00000007274	-	81	85.922	Phascolarctos_cinereus
ENSMUSG00000003848	Nob1	84	58.242	ENSPFOG00000000027	nob1	100	57.895	Poecilia_formosa
ENSMUSG00000003848	Nob1	62	62.791	ENSPLAG00000011546	nob1	91	62.403	Poecilia_latipinna
ENSMUSG00000003848	Nob1	100	59.903	ENSPMEG00000023435	nob1	100	59.903	Poecilia_mexicana
ENSMUSG00000003848	Nob1	99	56.455	ENSPREG00000007675	nob1	100	56.236	Poecilia_reticulata
ENSMUSG00000003848	Nob1	100	87.379	ENSPPYG00000007509	NOB1	100	87.621	Pongo_abelii
ENSMUSG00000003848	Nob1	100	80.815	ENSPCAG00000001527	NOB1	100	79.616	Procavia_capensis
ENSMUSG00000003848	Nob1	100	87.042	ENSPCOG00000025515	NOB1	100	87.042	Propithecus_coquereli
ENSMUSG00000003848	Nob1	78	59.133	ENSPVAG00000013330	NOB1	78	59.133	Pteropus_vampyrus
ENSMUSG00000003848	Nob1	99	64.500	ENSPNYG00000018449	nob1	99	64.500	Pundamilia_nyererei
ENSMUSG00000003848	Nob1	99	57.011	ENSPNAG00000004244	nob1	99	58.161	Pygocentrus_nattereri
ENSMUSG00000003848	Nob1	100	91.951	ENSRNOG00000021890	Nob1	100	91.951	Rattus_norvegicus
ENSMUSG00000003848	Nob1	100	86.683	ENSRBIG00000019599	NOB1	100	86.925	Rhinopithecus_bieti
ENSMUSG00000003848	Nob1	100	86.683	ENSRROG00000033419	NOB1	100	86.925	Rhinopithecus_roxellana
ENSMUSG00000003848	Nob1	73	33.333	YOR056C	NOB1	67	36.559	Saccharomyces_cerevisiae
ENSMUSG00000003848	Nob1	84	84.438	ENSSBOG00000029042	NOB1	89	85.014	Saimiri_boliviensis_boliviensis
ENSMUSG00000003848	Nob1	100	73.944	ENSSHAG00000015387	NOB1	100	75.837	Sarcophilus_harrisii
ENSMUSG00000003848	Nob1	100	62.903	ENSSFOG00015008503	nob1	100	64.977	Scleropages_formosus
ENSMUSG00000003848	Nob1	100	64.407	ENSSMAG00000003064	nob1	100	64.407	Scophthalmus_maximus
ENSMUSG00000003848	Nob1	100	63.768	ENSSDUG00000007307	nob1	100	64.251	Seriola_dumerili
ENSMUSG00000003848	Nob1	71	71.508	ENSSLDG00000011459	-	96	71.508	Seriola_lalandi_dorsalis
ENSMUSG00000003848	Nob1	94	64.631	ENSSPUG00000005621	NOB1	99	68.966	Sphenodon_punctatus
ENSMUSG00000003848	Nob1	100	64.951	ENSSPAG00000022362	nob1	100	65.686	Stegastes_partitus
ENSMUSG00000003848	Nob1	100	84.988	ENSSSCG00000002753	NOB1	100	84.988	Sus_scrofa
ENSMUSG00000003848	Nob1	51	75.349	ENSTGUG00000008124	NOB1	93	75.349	Taeniopygia_guttata
ENSMUSG00000003848	Nob1	99	65.089	ENSTRUG00000023145	nob1	100	63.218	Takifugu_rubripes
ENSMUSG00000003848	Nob1	99	65.089	ENSTRUG00000004780	nob1	100	63.218	Takifugu_rubripes
ENSMUSG00000003848	Nob1	99	63.373	ENSTNIG00000002552	nob1	100	63.373	Tetraodon_nigroviridis
ENSMUSG00000003848	Nob1	71	71.959	ENSTBEG00000000690	NOB1	62	71.959	Tupaia_belangeri
ENSMUSG00000003848	Nob1	61	83.984	ENSUAMG00000028135	NOB1	100	84.375	Ursus_americanus
ENSMUSG00000003848	Nob1	100	85.024	ENSUMAG00000018658	NOB1	95	85.266	Ursus_maritimus
ENSMUSG00000003848	Nob1	100	85.266	ENSVVUG00000017271	NOB1	100	85.507	Vulpes_vulpes
ENSMUSG00000003848	Nob1	100	61.379	ENSXETG00000017874	nob1	99	61.149	Xenopus_tropicalis
ENSMUSG00000003848	Nob1	84	59.942	ENSXCOG00000009734	nob1	100	59.706	Xiphophorus_couchianus
ENSMUSG00000003848	Nob1	100	60.238	ENSXMAG00000017371	nob1	100	60.238	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000469	cleavage involved in rRNA processing	-	IEA	Process
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0004521	endoribonuclease activity	-	ISO	Function
GO:0005634	nucleus	12588997.	ISA	Component
GO:0005730	nucleolus	12588997.	ISA	Component
GO:0005737	cytoplasm	12588997.	ISA	Component
GO:0007601	visual perception	22937111.	IMP	Process
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030490	maturation of SSU-rRNA	12588997.	ISA	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0042274	ribosomal small subunit biogenesis	12588997.	ISA	Process
GO:0046872	metal ion binding	-	IEA	Function