EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000003868 (Gene tree)
Gene ID: 20174
Gene Symbol: Ruvbl2
Alias: mp47|p47
Full Name: RuvB-like protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 16337
Position: chr7: 45421760-45438096
Accession: 1342299
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000211478	-	474	-	-	- (aa)	-	-
ENSMUST00000211666	-	846	-	ENSMUSP00000148040	221 (aa)	-	A0A1B0GSR4
ENSMUST00000209426	-	396	-	ENSMUSP00000147423	104 (aa)	-	A0A1B0GR89
ENSMUST00000210271	-	219	-	ENSMUSP00000147650	48 (aa)	-	A0A1B0GRT1
ENSMUST00000211440	-	585	-	ENSMUSP00000148205	134 (aa)	-	A0A1B0GT54
ENSMUST00000210439	-	725	-	ENSMUSP00000147688	237 (aa)	-	A0A1B0GRW3
ENSMUST00000211214	-	2312	-	ENSMUSP00000147502	463 (aa)	-	Q9WTM5
ENSMUST00000107771	-	1834	XM_006540722	ENSMUSP00000103400	463 (aa)	XP_006540785	Q9WTM5

Gene Model

Click here to download ENSMUSG00000003868's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000003868's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000003868	Ruvbl2	99	78.440	FBgn0040075	rept	94	78.146	Drosophila_melanogaster
ENSMUSG00000003868	Ruvbl2	100	99.568	ENSG00000183207	RUVBL2	100	100.000	Homo_sapiens
ENSMUSG00000003868	Ruvbl2	95	51.969	ENSG00000175792	RUVBL1	100	51.908	Homo_sapiens
ENSMUSG00000003868	Ruvbl2	95	51.969	ENSMUSG00000030079	Ruvbl1	100	47.761	Mus_musculus
ENSMUSG00000003868	Ruvbl2	97	71.963	YPL235W	RVB2	94	68.764	Saccharomyces_cerevisiae
ENSMUSG00000003868	Ruvbl2	87	48.718	YDR190C	RVB1	94	42.597	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000492	box C/D snoRNP assembly	21873635.	IBA	Process
GO:0000812	Swr1 complex	21873635.	IBA	Component
GO:0000812	Swr1 complex	-	ISO	Component
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	-	ISO	Function
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding	-	ISO	Function
GO:0001094	TFIID-class transcription factor complex binding	17636026.	IPI	Function
GO:0003678	DNA helicase activity	-	ISO	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0004003	ATP-dependent DNA helicase activity	21873635.	IBA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	17636026.20864032.	IPI	Function
GO:0005524	ATP binding	17636026.	IDA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005719	nuclear euchromatin	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008013	beta-catenin binding	-	ISO	Function
GO:0016573	histone acetylation	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0017025	TBP-class protein binding	-	ISO	Function
GO:0031011	Ino80 complex	21873635.	IBA	Component
GO:0031011	Ino80 complex	-	ISO	Component
GO:0031490	chromatin DNA binding	-	ISO	Function
GO:0034644	cellular response to UV	-	ISO	Process
GO:0035066	positive regulation of histone acetylation	-	ISO	Process
GO:0035267	NuA4 histone acetyltransferase complex	21873635.	IBA	Component
GO:0035267	NuA4 histone acetyltransferase complex	-	ISO	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	17636026.	IPI	Function
GO:0043141	ATP-dependent 5'-3' DNA helicase activity	-	IEA	Function
GO:0043531	ADP binding	17636026.	IDA	Function
GO:0043967	histone H4 acetylation	-	ISO	Process
GO:0043968	histone H2A acetylation	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0051117	ATPase binding	17636026.	IPI	Function
GO:0071169	establishment of protein localization to chromatin	-	ISO	Process
GO:0071339	MLL1 complex	-	ISO	Component
GO:0071392	cellular response to estradiol stimulus	-	ISO	Process
GO:0071733	transcriptional activation by promoter-enhancer looping	-	ISO	Process
GO:0071899	negative regulation of estrogen receptor binding	-	ISO	Process
GO:0090090	negative regulation of canonical Wnt signaling pathway	-	ISO	Process
GO:0097255	R2TP complex	21873635.	IBA	Component
GO:0097255	R2TP complex	-	ISO	Component
GO:1990904	ribonucleoprotein complex	19299493.	IDA	Component