EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000004268 (Gene tree)
Gene ID: 14791
Gene Symbol: Emg1
Alias: Grcc2f
Full Name: EMG1 N1-specific pseudouridine methyltransferase
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 8094 bases
Position: chr6:124704085-124712178
Accession: 1315195
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000004379	EMG1	PF03587.14	6.3e-84	1	1
ENSMUSP00000144730	EMG1	PF03587.14	8.9e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000125795	-	481	-	-	- (aa)	-	-
ENSMUST00000004379	-	1034	-	ENSMUSP00000004379	244 (aa)	-	O35130
ENSMUST00000141251	-	1074	-	-	- (aa)	-	-
ENSMUST00000142187	-	917	-	-	- (aa)	-	-
ENSMUST00000204334	-	4329	-	-	- (aa)	-	-
ENSMUST00000203238	-	381	-	ENSMUSP00000144730	122 (aa)	-	A0A0N4SUL6

Gene Model

Click here to download ENSMUSG00000004268's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000004268's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000004268	Emg1	100	88.934	ENSG00000126749	EMG1	100	88.934	Homo_sapiens
ENSMUSG00000004268	Emg1	84	76.471	ENSAPOG00000023213	emg1	86	76.471	Acanthochromis_polyacanthus
ENSMUSG00000004268	Emg1	100	88.525	ENSAMEG00000013753	EMG1	100	88.525	Ailuropoda_melanoleuca
ENSMUSG00000004268	Emg1	92	72.321	ENSACIG00000011786	emg1	94	72.321	Amphilophus_citrinellus
ENSMUSG00000004268	Emg1	99	67.078	ENSAOCG00000006520	emg1	99	67.078	Amphiprion_ocellaris
ENSMUSG00000004268	Emg1	99	67.078	ENSAPEG00000011094	emg1	99	67.078	Amphiprion_percula
ENSMUSG00000004268	Emg1	99	69.421	ENSATEG00000021642	emg1	99	69.421	Anabas_testudineus
ENSMUSG00000004268	Emg1	77	85.185	ENSAPLG00000005308	EMG1	100	85.185	Anas_platyrhynchos
ENSMUSG00000004268	Emg1	85	84.615	ENSACAG00000007210	EMG1	91	84.615	Anolis_carolinensis
ENSMUSG00000004268	Emg1	76	38.947	ENSANAG00000028066	-	81	72.973	Aotus_nancymaae
ENSMUSG00000004268	Emg1	100	87.347	ENSANAG00000022855	-	100	87.347	Aotus_nancymaae
ENSMUSG00000004268	Emg1	100	80.328	ENSANAG00000029536	-	100	80.328	Aotus_nancymaae
ENSMUSG00000004268	Emg1	100	68.443	ENSACLG00000023688	emg1	100	68.443	Astatotilapia_calliptera
ENSMUSG00000004268	Emg1	97	69.068	ENSAMXG00000018994	emg1	99	69.068	Astyanax_mexicanus
ENSMUSG00000004268	Emg1	100	90.164	ENSBTAG00000013126	EMG1	70	90.164	Bos_taurus
ENSMUSG00000004268	Emg1	92	54.585	WBGene00012652	Y39A1A.14	99	54.585	Caenorhabditis_elegans
ENSMUSG00000004268	Emg1	100	88.115	ENSCJAG00000007120	EMG1	100	88.115	Callithrix_jacchus
ENSMUSG00000004268	Emg1	100	88.934	ENSCAFG00000014424	EMG1	100	88.934	Canis_familiaris
ENSMUSG00000004268	Emg1	100	88.934	ENSCAFG00020003127	EMG1	100	88.934	Canis_lupus_dingo
ENSMUSG00000004268	Emg1	100	89.754	ENSCHIG00000003188	EMG1	100	89.754	Capra_hircus
ENSMUSG00000004268	Emg1	62	93.377	ENSTSYG00000035847	EMG1	100	93.377	Carlito_syrichta
ENSMUSG00000004268	Emg1	62	96.026	ENSCAPG00000011212	EMG1	100	96.026	Cavia_aperea
ENSMUSG00000004268	Emg1	100	89.754	ENSCPOG00000025388	EMG1	100	89.754	Cavia_porcellus
ENSMUSG00000004268	Emg1	52	85.714	ENSCCAG00000034889	-	85	72.603	Cebus_capucinus
ENSMUSG00000004268	Emg1	62	67.763	ENSCCAG00000024274	-	100	67.763	Cebus_capucinus
ENSMUSG00000004268	Emg1	100	88.115	ENSCCAG00000033309	-	100	88.115	Cebus_capucinus
ENSMUSG00000004268	Emg1	100	89.344	ENSCATG00000016750	EMG1	100	89.344	Cercocebus_atys
ENSMUSG00000004268	Emg1	100	88.934	ENSCLAG00000015067	EMG1	100	88.934	Chinchilla_lanigera
ENSMUSG00000004268	Emg1	100	89.344	ENSCSAG00000010140	EMG1	100	89.344	Chlorocebus_sabaeus
ENSMUSG00000004268	Emg1	100	90.164	ENSCHOG00000002886	EMG1	100	90.164	Choloepus_hoffmanni
ENSMUSG00000004268	Emg1	82	78.000	ENSCPBG00000005167	EMG1	67	78.000	Chrysemys_picta_bellii
ENSMUSG00000004268	Emg1	97	67.647	ENSCING00000022202	-	100	67.647	Ciona_intestinalis
ENSMUSG00000004268	Emg1	95	67.241	ENSCSAVG00000005612	-	98	67.241	Ciona_savignyi
ENSMUSG00000004268	Emg1	93	80.176	ENSCANG00000042498	-	100	87.857	Colobus_angolensis_palliatus
ENSMUSG00000004268	Emg1	100	88.525	ENSCANG00000043101	-	100	88.525	Colobus_angolensis_palliatus
ENSMUSG00000004268	Emg1	100	90.984	ENSCGRG00001018228	Emg1	100	90.984	Cricetulus_griseus_chok1gshd
ENSMUSG00000004268	Emg1	100	90.984	ENSCGRG00000018238	Emg1	100	90.984	Cricetulus_griseus_crigri
ENSMUSG00000004268	Emg1	96	67.364	ENSCSEG00000020136	emg1	99	67.364	Cynoglossus_semilaevis
ENSMUSG00000004268	Emg1	92	71.875	ENSCVAG00000001164	emg1	94	71.875	Cyprinodon_variegatus
ENSMUSG00000004268	Emg1	84	75.980	ENSDARG00000056914	emg1	86	75.980	Danio_rerio
ENSMUSG00000004268	Emg1	100	88.934	ENSDNOG00000005533	EMG1	100	88.934	Dasypus_novemcinctus
ENSMUSG00000004268	Emg1	100	74.180	ENSDORG00000009795	Emg1	100	74.180	Dipodomys_ordii
ENSMUSG00000004268	Emg1	95	59.583	FBgn0029714	CG3527	94	59.583	Drosophila_melanogaster
ENSMUSG00000004268	Emg1	62	61.842	ENSETEG00000009111	-	99	61.842	Echinops_telfairi
ENSMUSG00000004268	Emg1	83	69.118	ENSEBUG00000008287	emg1	99	59.524	Eptatretus_burgeri
ENSMUSG00000004268	Emg1	100	90.164	ENSEASG00005016018	EMG1	100	90.164	Equus_asinus_asinus
ENSMUSG00000004268	Emg1	100	90.574	ENSECAG00000022412	EMG1	100	90.574	Equus_caballus
ENSMUSG00000004268	Emg1	100	89.344	ENSEEUG00000000065	EMG1	100	89.344	Erinaceus_europaeus
ENSMUSG00000004268	Emg1	100	88.115	ENSFCAG00000004288	EMG1	100	88.115	Felis_catus
ENSMUSG00000004268	Emg1	84	88.835	ENSFALG00000004617	EMG1	92	82.895	Ficedula_albicollis
ENSMUSG00000004268	Emg1	100	88.115	ENSFDAG00000011086	EMG1	100	88.115	Fukomys_damarensis
ENSMUSG00000004268	Emg1	57	61.594	ENSFHEG00000014307	emg1	82	61.594	Fundulus_heteroclitus
ENSMUSG00000004268	Emg1	71	51.240	ENSFHEG00000014379	emg1	55	70.732	Fundulus_heteroclitus
ENSMUSG00000004268	Emg1	100	65.984	ENSGMOG00000011025	emg1	98	65.984	Gadus_morhua
ENSMUSG00000004268	Emg1	96	78.723	ENSGALG00000014568	EMG1	99	78.723	Gallus_gallus
ENSMUSG00000004268	Emg1	92	72.321	ENSGAFG00000014143	emg1	94	72.321	Gambusia_affinis
ENSMUSG00000004268	Emg1	96	69.620	ENSGACG00000010330	emg1	96	69.620	Gasterosteus_aculeatus
ENSMUSG00000004268	Emg1	77	87.302	ENSGAGG00000005641	EMG1	100	86.755	Gopherus_agassizii
ENSMUSG00000004268	Emg1	100	88.934	ENSGGOG00000004287	EMG1	100	88.934	Gorilla_gorilla
ENSMUSG00000004268	Emg1	100	68.443	ENSHBUG00000014862	emg1	100	68.443	Haplochromis_burtoni
ENSMUSG00000004268	Emg1	100	89.837	ENSHGLG00000001300	EMG1	100	89.837	Heterocephalus_glaber_female
ENSMUSG00000004268	Emg1	100	89.837	ENSHGLG00100011644	EMG1	100	89.837	Heterocephalus_glaber_male
ENSMUSG00000004268	Emg1	100	67.213	ENSHCOG00000017870	emg1	100	67.213	Hippocampus_comes
ENSMUSG00000004268	Emg1	83	76.355	ENSIPUG00000008261	emg1	85	76.355	Ictalurus_punctatus
ENSMUSG00000004268	Emg1	100	90.164	ENSSTOG00000000387	EMG1	100	90.164	Ictidomys_tridecemlineatus
ENSMUSG00000004268	Emg1	100	87.398	ENSJJAG00000018448	Emg1	100	87.398	Jaculus_jaculus
ENSMUSG00000004268	Emg1	89	72.851	ENSKMAG00000007069	emg1	92	72.851	Kryptolebias_marmoratus
ENSMUSG00000004268	Emg1	92	72.321	ENSLBEG00000007424	emg1	94	72.321	Labrus_bergylta
ENSMUSG00000004268	Emg1	99	69.136	ENSLOCG00000008451	emg1	98	69.136	Lepisosteus_oculatus
ENSMUSG00000004268	Emg1	100	88.934	ENSLAFG00000001314	EMG1	100	88.934	Loxodonta_africana
ENSMUSG00000004268	Emg1	100	89.344	ENSMFAG00000037142	EMG1	100	89.344	Macaca_fascicularis
ENSMUSG00000004268	Emg1	100	89.344	ENSMMUG00000010207	EMG1	100	89.344	Macaca_mulatta
ENSMUSG00000004268	Emg1	100	89.344	ENSMNEG00000040907	EMG1	100	89.344	Macaca_nemestrina
ENSMUSG00000004268	Emg1	100	89.344	ENSMLEG00000026029	EMG1	100	89.344	Mandrillus_leucophaeus
ENSMUSG00000004268	Emg1	99	69.835	ENSMAMG00000001888	emg1	99	69.835	Mastacembelus_armatus
ENSMUSG00000004268	Emg1	100	68.443	ENSMZEG00005017546	emg1	100	68.443	Maylandia_zebra
ENSMUSG00000004268	Emg1	84	86.893	ENSMGAG00000014145	EMG1	96	79.915	Meleagris_gallopavo
ENSMUSG00000004268	Emg1	100	91.803	ENSMAUG00000011093	Emg1	100	91.803	Mesocricetus_auratus
ENSMUSG00000004268	Emg1	100	90.574	ENSMICG00000001790	EMG1	100	90.574	Microcebus_murinus
ENSMUSG00000004268	Emg1	100	92.623	ENSMOCG00000022570	Emg1	100	92.623	Microtus_ochrogaster
ENSMUSG00000004268	Emg1	99	67.769	ENSMMOG00000016090	emg1	99	67.769	Mola_mola
ENSMUSG00000004268	Emg1	100	84.836	ENSMODG00000018161	EMG1	98	84.836	Monodelphis_domestica
ENSMUSG00000004268	Emg1	95	70.085	ENSMALG00000022477	emg1	98	70.085	Monopterus_albus
ENSMUSG00000004268	Emg1	100	97.541	MGP_CAROLIEiJ_G0028844	Emg1	100	97.541	Mus_caroli
ENSMUSG00000004268	Emg1	100	97.131	MGP_PahariEiJ_G0022605	Emg1	100	97.131	Mus_pahari
ENSMUSG00000004268	Emg1	100	99.590	MGP_SPRETEiJ_G0029886	Emg1	100	99.590	Mus_spretus
ENSMUSG00000004268	Emg1	100	88.115	ENSMPUG00000016763	EMG1	100	88.115	Mustela_putorius_furo
ENSMUSG00000004268	Emg1	100	89.024	ENSMLUG00000009196	EMG1	100	89.024	Myotis_lucifugus
ENSMUSG00000004268	Emg1	100	90.574	ENSNGAG00000022592	Emg1	100	90.574	Nannospalax_galili
ENSMUSG00000004268	Emg1	100	68.443	ENSNBRG00000001192	emg1	100	68.443	Neolamprologus_brichardi
ENSMUSG00000004268	Emg1	100	88.934	ENSNLEG00000005080	EMG1	100	88.934	Nomascus_leucogenys
ENSMUSG00000004268	Emg1	93	85.022	ENSMEUG00000000831	EMG1	100	85.022	Notamacropus_eugenii
ENSMUSG00000004268	Emg1	77	94.149	ENSOPRG00000016878	-	100	94.149	Ochotona_princeps
ENSMUSG00000004268	Emg1	100	65.190	ENSOPRG00000004071	-	100	84.906	Ochotona_princeps
ENSMUSG00000004268	Emg1	100	88.115	ENSODEG00000004059	EMG1	100	88.115	Octodon_degus
ENSMUSG00000004268	Emg1	100	68.852	ENSONIG00000012893	emg1	99	68.852	Oreochromis_niloticus
ENSMUSG00000004268	Emg1	100	88.934	ENSOCUG00000003603	EMG1	100	88.934	Oryctolagus_cuniculus
ENSMUSG00000004268	Emg1	92	72.768	ENSORLG00000012146	emg1	91	72.768	Oryzias_latipes
ENSMUSG00000004268	Emg1	92	72.768	ENSORLG00020005499	emg1	94	72.768	Oryzias_latipes_hni
ENSMUSG00000004268	Emg1	92	72.768	ENSORLG00015011535	emg1	94	72.768	Oryzias_latipes_hsok
ENSMUSG00000004268	Emg1	92	73.661	ENSOMEG00000012687	emg1	94	73.661	Oryzias_melastigma
ENSMUSG00000004268	Emg1	100	89.754	ENSOGAG00000006975	EMG1	100	89.754	Otolemur_garnettii
ENSMUSG00000004268	Emg1	100	88.618	ENSOARG00000004923	EMG1	100	88.618	Ovis_aries
ENSMUSG00000004268	Emg1	100	89.754	ENSPPAG00000033046	EMG1	100	89.754	Pan_paniscus
ENSMUSG00000004268	Emg1	100	88.525	ENSPPRG00000012350	EMG1	100	88.525	Panthera_pardus
ENSMUSG00000004268	Emg1	100	88.525	ENSPTIG00000000358	EMG1	100	88.525	Panthera_tigris_altaica
ENSMUSG00000004268	Emg1	100	89.754	ENSPTRG00000048050	EMG1	100	89.754	Pan_troglodytes
ENSMUSG00000004268	Emg1	100	88.525	ENSPANG00000005523	-	100	88.525	Papio_anubis
ENSMUSG00000004268	Emg1	100	88.934	ENSPANG00000019398	-	100	88.934	Papio_anubis
ENSMUSG00000004268	Emg1	100	67.755	ENSPKIG00000025303	emg1	100	67.755	Paramormyrops_kingsleyae
ENSMUSG00000004268	Emg1	84	86.765	ENSPSIG00000011094	EMG1	88	86.765	Pelodiscus_sinensis
ENSMUSG00000004268	Emg1	92	73.661	ENSPMGG00000019918	emg1	94	73.661	Periophthalmus_magnuspinnatus
ENSMUSG00000004268	Emg1	100	91.393	ENSPEMG00000010244	Emg1	100	91.393	Peromyscus_maniculatus_bairdii
ENSMUSG00000004268	Emg1	100	85.656	ENSPCIG00000002814	EMG1	100	85.656	Phascolarctos_cinereus
ENSMUSG00000004268	Emg1	92	71.429	ENSPFOG00000013034	emg1	94	71.429	Poecilia_formosa
ENSMUSG00000004268	Emg1	92	71.429	ENSPLAG00000000125	emg1	94	71.429	Poecilia_latipinna
ENSMUSG00000004268	Emg1	92	71.875	ENSPMEG00000016802	emg1	94	71.875	Poecilia_mexicana
ENSMUSG00000004268	Emg1	98	67.364	ENSPREG00000010409	emg1	82	67.364	Poecilia_reticulata
ENSMUSG00000004268	Emg1	100	89.754	ENSPPYG00000004215	EMG1	100	89.754	Pongo_abelii
ENSMUSG00000004268	Emg1	100	86.885	ENSPCAG00000012368	EMG1	100	77.049	Procavia_capensis
ENSMUSG00000004268	Emg1	100	90.984	ENSPCOG00000028560	EMG1	100	90.984	Propithecus_coquereli
ENSMUSG00000004268	Emg1	100	89.754	ENSPVAG00000006030	EMG1	100	89.754	Pteropus_vampyrus
ENSMUSG00000004268	Emg1	100	68.443	ENSPNYG00000023172	emg1	100	68.443	Pundamilia_nyererei
ENSMUSG00000004268	Emg1	99	67.769	ENSPNAG00000019953	emg1	99	67.769	Pygocentrus_nattereri
ENSMUSG00000004268	Emg1	100	96.721	ENSRNOG00000012828	Emg1	100	96.721	Rattus_norvegicus
ENSMUSG00000004268	Emg1	100	89.344	ENSRBIG00000031315	EMG1	100	89.344	Rhinopithecus_bieti
ENSMUSG00000004268	Emg1	100	89.344	ENSRROG00000032961	EMG1	100	89.344	Rhinopithecus_roxellana
ENSMUSG00000004268	Emg1	84	52.336	YLR186W	EMG1	85	52.336	Saccharomyces_cerevisiae
ENSMUSG00000004268	Emg1	93	64.758	ENSSBOG00000022895	-	93	64.758	Saimiri_boliviensis_boliviensis
ENSMUSG00000004268	Emg1	100	88.525	ENSSBOG00000029143	-	100	88.525	Saimiri_boliviensis_boliviensis
ENSMUSG00000004268	Emg1	100	85.246	ENSSHAG00000016428	EMG1	100	85.246	Sarcophilus_harrisii
ENSMUSG00000004268	Emg1	100	65.714	ENSSFOG00015002421	emg1	100	65.714	Scleropages_formosus
ENSMUSG00000004268	Emg1	92	73.661	ENSSMAG00000011806	emg1	94	73.661	Scophthalmus_maximus
ENSMUSG00000004268	Emg1	98	69.136	ENSSDUG00000011345	emg1	96	69.136	Seriola_dumerili
ENSMUSG00000004268	Emg1	92	72.768	ENSSLDG00000023439	emg1	89	72.768	Seriola_lalandi_dorsalis
ENSMUSG00000004268	Emg1	100	69.672	ENSSARG00000002227	EMG1	100	69.672	Sorex_araneus
ENSMUSG00000004268	Emg1	93	78.319	ENSSPUG00000014446	EMG1	95	78.319	Sphenodon_punctatus
ENSMUSG00000004268	Emg1	83	77.340	ENSSPAG00000005460	emg1	86	77.340	Stegastes_partitus
ENSMUSG00000004268	Emg1	100	90.164	ENSSSCG00000026812	EMG1	100	90.164	Sus_scrofa
ENSMUSG00000004268	Emg1	84	89.320	ENSTGUG00000013271	EMG1	100	89.320	Taeniopygia_guttata
ENSMUSG00000004268	Emg1	92	73.214	ENSTRUG00000001906	emg1	94	73.214	Takifugu_rubripes
ENSMUSG00000004268	Emg1	96	70.763	ENSTNIG00000008047	emg1	97	70.763	Tetraodon_nigroviridis
ENSMUSG00000004268	Emg1	86	93.780	ENSTBEG00000015406	EMG1	100	93.780	Tupaia_belangeri
ENSMUSG00000004268	Emg1	100	74.590	ENSTTRG00000004810	EMG1	100	74.590	Tursiops_truncatus
ENSMUSG00000004268	Emg1	100	88.934	ENSUAMG00000026959	EMG1	100	88.934	Ursus_americanus
ENSMUSG00000004268	Emg1	100	88.525	ENSUMAG00000003248	EMG1	100	88.525	Ursus_maritimus
ENSMUSG00000004268	Emg1	100	88.934	ENSVVUG00000010807	EMG1	100	88.934	Vulpes_vulpes
ENSMUSG00000004268	Emg1	83	81.281	ENSXETG00000023917	emg1	99	81.281	Xenopus_tropicalis
ENSMUSG00000004268	Emg1	84	77.451	ENSXMAG00000011508	emg1	86	77.451	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001824	blastocyst development	20858271.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0017126	nucleologenesis	20858271.	IMP	Process
GO:0019843	rRNA binding	21873635.	IBA	Function
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0032259	methylation	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0070037	rRNA (pseudouridine) methyltransferase activity	21873635.	IBA	Function
GO:0070037	rRNA (pseudouridine) methyltransferase activity	-	ISO	Function
GO:0070475	rRNA base methylation	21873635.	IBA	Process