EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000004356 (Gene tree)
Gene ID: 70683
Gene Symbol: Utp20
Alias: 3830408P06Rik|DRIM|mDRIM
Full Name: UTP20 small subunit processome component
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 80198 bases
Position: chr10:88746607-88826804
Accession: 1917933
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000004470	DRIM	PF07539.12	4.2e-175	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000220275	-	484	-	-	- (aa)	-	-
ENSMUST00000220188	-	784	-	ENSMUSP00000151748	201 (aa)	-	A0A1W2P7L8
ENSMUST00000218990	-	914	-	-	- (aa)	-	-
ENSMUST00000004470	-	8821	-	ENSMUSP00000004470	2789 (aa)	-	E9QK83
ENSMUST00000220439	-	670	-	-	- (aa)	-	-
ENSMUST00000218967	-	657	-	ENSMUSP00000151292	162 (aa)	-	A0A1W2P6J9
ENSMUST00000219662	-	729	-	ENSMUSP00000152020	141 (aa)	-	A0A1W2P8D7

Gene Model

Click here to download ENSMUSG00000004356's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000004356's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000004356	Utp20	100	85.847	ENSG00000120800	UTP20	100	85.991	Homo_sapiens
ENSMUSG00000004356	Utp20	100	56.508	ENSAPOG00000002429	utp20	99	56.545	Acanthochromis_polyacanthus
ENSMUSG00000004356	Utp20	100	85.873	ENSAMEG00000016416	UTP20	100	85.730	Ailuropoda_melanoleuca
ENSMUSG00000004356	Utp20	100	55.792	ENSACIG00000007987	utp20	99	55.997	Amphilophus_citrinellus
ENSMUSG00000004356	Utp20	94	57.576	ENSAOCG00000015055	utp20	96	57.151	Amphiprion_ocellaris
ENSMUSG00000004356	Utp20	100	56.540	ENSAPEG00000011605	utp20	99	56.670	Amphiprion_percula
ENSMUSG00000004356	Utp20	98	54.618	ENSATEG00000005601	utp20	99	55.415	Anabas_testudineus
ENSMUSG00000004356	Utp20	99	67.107	ENSAPLG00000015651	UTP20	100	67.513	Anas_platyrhynchos
ENSMUSG00000004356	Utp20	100	66.750	ENSACAG00000011671	UTP20	100	66.643	Anolis_carolinensis
ENSMUSG00000004356	Utp20	100	83.321	ENSANAG00000027152	UTP20	100	83.250	Aotus_nancymaae
ENSMUSG00000004356	Utp20	95	59.524	ENSACLG00000008064	utp20	99	59.524	Astatotilapia_calliptera
ENSMUSG00000004356	Utp20	100	55.902	ENSAMXG00000021039	utp20	99	55.997	Astyanax_mexicanus
ENSMUSG00000004356	Utp20	100	85.382	ENSBTAG00000003239	UTP20	100	85.238	Bos_taurus
ENSMUSG00000004356	Utp20	100	85.116	ENSCJAG00000001913	UTP20	100	84.866	Callithrix_jacchus
ENSMUSG00000004356	Utp20	100	85.335	ENSCAFG00000006964	UTP20	100	85.120	Canis_familiaris
ENSMUSG00000004356	Utp20	100	85.335	ENSCAFG00020024305	UTP20	100	85.120	Canis_lupus_dingo
ENSMUSG00000004356	Utp20	100	85.136	ENSCHIG00000009221	UTP20	100	84.456	Capra_hircus
ENSMUSG00000004356	Utp20	100	84.020	ENSTSYG00000003040	UTP20	100	83.828	Carlito_syrichta
ENSMUSG00000004356	Utp20	94	82.707	ENSCAPG00000014920	UTP20	100	74.515	Cavia_aperea
ENSMUSG00000004356	Utp20	100	76.854	ENSCPOG00000003129	UTP20	100	76.827	Cavia_porcellus
ENSMUSG00000004356	Utp20	100	85.689	ENSCCAG00000031422	UTP20	100	85.668	Cebus_capucinus
ENSMUSG00000004356	Utp20	100	82.731	ENSCATG00000035636	UTP20	100	82.696	Cercocebus_atys
ENSMUSG00000004356	Utp20	100	80.072	ENSCLAG00000011569	UTP20	100	79.892	Chinchilla_lanigera
ENSMUSG00000004356	Utp20	100	85.597	ENSCSAG00000003388	UTP20	100	85.740	Chlorocebus_sabaeus
ENSMUSG00000004356	Utp20	92	90.909	ENSCHOG00000003532	UTP20	94	90.909	Choloepus_hoffmanni
ENSMUSG00000004356	Utp20	95	69.481	ENSCPBG00000004844	UTP20	99	69.630	Chrysemys_picta_bellii
ENSMUSG00000004356	Utp20	93	30.447	ENSCSAVG00000008252	-	97	30.303	Ciona_savignyi
ENSMUSG00000004356	Utp20	100	82.121	ENSCANG00000034768	UTP20	100	83.784	Colobus_angolensis_palliatus
ENSMUSG00000004356	Utp20	100	91.434	ENSCGRG00001017151	Utp20	100	91.254	Cricetulus_griseus_chok1gshd
ENSMUSG00000004356	Utp20	100	91.007	ENSCGRG00000008595	Utp20	100	90.828	Cricetulus_griseus_crigri
ENSMUSG00000004356	Utp20	98	53.384	ENSCSEG00000014760	utp20	99	53.676	Cynoglossus_semilaevis
ENSMUSG00000004356	Utp20	99	54.010	ENSCVAG00000001727	utp20	99	54.291	Cyprinodon_variegatus
ENSMUSG00000004356	Utp20	99	56.483	ENSDARG00000099280	utp20	99	56.859	Danio_rerio
ENSMUSG00000004356	Utp20	100	83.363	ENSDNOG00000016845	UTP20	100	83.185	Dasypus_novemcinctus
ENSMUSG00000004356	Utp20	96	87.183	ENSDORG00000014762	Utp20	99	87.183	Dipodomys_ordii
ENSMUSG00000004356	Utp20	94	86.784	ENSETEG00000019983	UTP20	94	88.326	Echinops_telfairi
ENSMUSG00000004356	Utp20	100	85.832	ENSEASG00005019981	UTP20	99	88.286	Equus_asinus_asinus
ENSMUSG00000004356	Utp20	100	85.975	ENSECAG00000006876	UTP20	99	88.286	Equus_caballus
ENSMUSG00000004356	Utp20	72	84.426	ENSEEUG00000003774	UTP20	75	83.607	Erinaceus_europaeus
ENSMUSG00000004356	Utp20	100	56.202	ENSELUG00000000798	utp20	99	56.287	Esox_lucius
ENSMUSG00000004356	Utp20	100	85.376	ENSFCAG00000006150	UTP20	100	85.376	Felis_catus
ENSMUSG00000004356	Utp20	93	70.896	ENSFALG00000011135	UTP20	100	66.011	Ficedula_albicollis
ENSMUSG00000004356	Utp20	94	84.211	ENSFDAG00000007567	UTP20	100	67.202	Fukomys_damarensis
ENSMUSG00000004356	Utp20	98	52.134	ENSFHEG00000004142	utp20	99	54.788	Fundulus_heteroclitus
ENSMUSG00000004356	Utp20	99	51.852	ENSGMOG00000006762	utp20	100	52.508	Gadus_morhua
ENSMUSG00000004356	Utp20	100	67.450	ENSGALG00000011643	UTP20	100	67.402	Gallus_gallus
ENSMUSG00000004356	Utp20	97	53.424	ENSGAFG00000006986	utp20	99	53.975	Gambusia_affinis
ENSMUSG00000004356	Utp20	100	55.059	ENSGACG00000019092	utp20	100	55.020	Gasterosteus_aculeatus
ENSMUSG00000004356	Utp20	99	66.187	ENSGAGG00000011169	UTP20	97	69.586	Gopherus_agassizii
ENSMUSG00000004356	Utp20	100	84.962	ENSGGOG00000004904	UTP20	100	84.927	Gorilla_gorilla
ENSMUSG00000004356	Utp20	100	55.670	ENSHBUG00000010613	utp20	99	55.614	Haplochromis_burtoni
ENSMUSG00000004356	Utp20	100	79.405	ENSHGLG00000006422	UTP20	100	79.334	Heterocephalus_glaber_female
ENSMUSG00000004356	Utp20	100	77.499	ENSHGLG00100001086	UTP20	100	77.284	Heterocephalus_glaber_male
ENSMUSG00000004356	Utp20	100	53.340	ENSHCOG00000005421	utp20	99	54.237	Hippocampus_comes
ENSMUSG00000004356	Utp20	100	56.195	ENSIPUG00000013717	utp20	99	56.383	Ictalurus_punctatus
ENSMUSG00000004356	Utp20	100	86.390	ENSSTOG00000015995	UTP20	100	86.318	Ictidomys_tridecemlineatus
ENSMUSG00000004356	Utp20	100	85.458	ENSJJAG00000019321	Utp20	100	85.638	Jaculus_jaculus
ENSMUSG00000004356	Utp20	100	53.764	ENSKMAG00000005972	utp20	99	53.550	Kryptolebias_marmoratus
ENSMUSG00000004356	Utp20	98	53.477	ENSLBEG00000000781	utp20	99	54.401	Labrus_bergylta
ENSMUSG00000004356	Utp20	86	66.116	ENSLACG00000010098	UTP20	100	63.285	Latimeria_chalumnae
ENSMUSG00000004356	Utp20	93	61.069	ENSLOCG00000015197	utp20	99	58.959	Lepisosteus_oculatus
ENSMUSG00000004356	Utp20	100	83.672	ENSLAFG00000012983	UTP20	100	83.850	Loxodonta_africana
ENSMUSG00000004356	Utp20	100	85.632	ENSMFAG00000037766	UTP20	100	85.776	Macaca_fascicularis
ENSMUSG00000004356	Utp20	100	85.776	ENSMMUG00000012891	UTP20	100	85.919	Macaca_mulatta
ENSMUSG00000004356	Utp20	100	83.554	ENSMNEG00000037418	UTP20	100	83.698	Macaca_nemestrina
ENSMUSG00000004356	Utp20	100	83.172	ENSMLEG00000029148	UTP20	100	83.280	Mandrillus_leucophaeus
ENSMUSG00000004356	Utp20	100	55.078	ENSMAMG00000002063	utp20	99	55.599	Mastacembelus_armatus
ENSMUSG00000004356	Utp20	100	56.263	ENSMZEG00005018123	utp20	99	56.064	Maylandia_zebra
ENSMUSG00000004356	Utp20	100	67.130	ENSMGAG00000011726	UTP20	100	67.213	Meleagris_gallopavo
ENSMUSG00000004356	Utp20	94	89.394	ENSMAUG00000011898	Utp20	100	91.222	Mesocricetus_auratus
ENSMUSG00000004356	Utp20	100	82.749	ENSMICG00000015736	UTP20	100	82.749	Microcebus_murinus
ENSMUSG00000004356	Utp20	100	87.849	ENSMOCG00000015242	Utp20	100	87.957	Microtus_ochrogaster
ENSMUSG00000004356	Utp20	100	52.924	ENSMMOG00000003360	utp20	100	52.703	Mola_mola
ENSMUSG00000004356	Utp20	100	72.543	ENSMODG00000003141	UTP20	100	72.453	Monodelphis_domestica
ENSMUSG00000004356	Utp20	100	55.421	ENSMALG00000002723	utp20	99	55.563	Monopterus_albus
ENSMUSG00000004356	Utp20	100	98.566	MGP_CAROLIEiJ_G0015713	Utp20	100	98.566	Mus_caroli
ENSMUSG00000004356	Utp20	100	97.311	MGP_PahariEiJ_G0031372	Utp20	100	97.311	Mus_pahari
ENSMUSG00000004356	Utp20	100	99.606	MGP_SPRETEiJ_G0016531	Utp20	100	99.606	Mus_spretus
ENSMUSG00000004356	Utp20	100	85.382	ENSMPUG00000011641	UTP20	100	85.382	Mustela_putorius_furo
ENSMUSG00000004356	Utp20	100	85.500	ENSMLUG00000002313	UTP20	100	85.250	Myotis_lucifugus
ENSMUSG00000004356	Utp20	100	88.606	ENSNGAG00000013738	Utp20	100	88.427	Nannospalax_galili
ENSMUSG00000004356	Utp20	81	72.308	ENSNBRG00000019464	utp20	99	72.308	Neolamprologus_brichardi
ENSMUSG00000004356	Utp20	100	85.591	ENSNLEG00000006166	UTP20	100	85.735	Nomascus_leucogenys
ENSMUSG00000004356	Utp20	89	100.000	ENSMEUG00000015457	UTP20	91	100.000	Notamacropus_eugenii
ENSMUSG00000004356	Utp20	86	93.631	ENSOPRG00000010546	UTP20	87	93.631	Ochotona_princeps
ENSMUSG00000004356	Utp20	100	80.143	ENSODEG00000013411	UTP20	100	80.036	Octodon_degus
ENSMUSG00000004356	Utp20	100	56.266	ENSONIG00000009910	utp20	100	55.863	Oreochromis_niloticus
ENSMUSG00000004356	Utp20	99	71.719	ENSOANG00000005578	UTP20	99	71.724	Ornithorhynchus_anatinus
ENSMUSG00000004356	Utp20	100	85.944	ENSOCUG00000010475	UTP20	100	85.873	Oryctolagus_cuniculus
ENSMUSG00000004356	Utp20	97	51.799	ENSORLG00000008900	utp20	99	54.641	Oryzias_latipes
ENSMUSG00000004356	Utp20	94	55.063	ENSORLG00020005879	utp20	99	55.331	Oryzias_latipes_hni
ENSMUSG00000004356	Utp20	98	51.348	ENSORLG00015002843	utp20	99	51.614	Oryzias_latipes_hsok
ENSMUSG00000004356	Utp20	98	53.014	ENSOMEG00000023583	utp20	99	53.285	Oryzias_melastigma
ENSMUSG00000004356	Utp20	100	84.472	ENSOGAG00000015130	UTP20	100	84.442	Otolemur_garnettii
ENSMUSG00000004356	Utp20	100	84.885	ENSOARG00000014722	UTP20	100	84.885	Ovis_aries
ENSMUSG00000004356	Utp20	100	85.903	ENSPPAG00000001381	UTP20	100	85.868	Pan_paniscus
ENSMUSG00000004356	Utp20	100	85.627	ENSPPRG00000001026	UTP20	100	85.591	Panthera_pardus
ENSMUSG00000004356	Utp20	100	85.484	ENSPTIG00000020972	UTP20	100	85.448	Panthera_tigris_altaica
ENSMUSG00000004356	Utp20	100	85.847	ENSPTRG00000005349	UTP20	100	85.991	Pan_troglodytes
ENSMUSG00000004356	Utp20	100	85.597	ENSPANG00000020388	UTP20	100	85.740	Papio_anubis
ENSMUSG00000004356	Utp20	100	55.591	ENSPKIG00000007196	utp20	99	55.544	Paramormyrops_kingsleyae
ENSMUSG00000004356	Utp20	94	68.972	ENSPSIG00000016689	UTP20	100	68.847	Pelodiscus_sinensis
ENSMUSG00000004356	Utp20	100	54.420	ENSPMGG00000004066	utp20	99	54.655	Periophthalmus_magnuspinnatus
ENSMUSG00000004356	Utp20	100	90.821	ENSPEMG00000024120	Utp20	100	90.857	Peromyscus_maniculatus_bairdii
ENSMUSG00000004356	Utp20	66	54.839	ENSPMAG00000003948	-	100	50.346	Petromyzon_marinus
ENSMUSG00000004356	Utp20	100	71.774	ENSPCIG00000009298	UTP20	100	71.682	Phascolarctos_cinereus
ENSMUSG00000004356	Utp20	93	53.787	ENSPFOG00000003312	utp20	100	53.976	Poecilia_formosa
ENSMUSG00000004356	Utp20	98	53.149	ENSPLAG00000012874	utp20	99	55.577	Poecilia_latipinna
ENSMUSG00000004356	Utp20	98	52.172	ENSPMEG00000005915	utp20	99	54.820	Poecilia_mexicana
ENSMUSG00000004356	Utp20	98	52.984	ENSPREG00000013285	utp20	99	53.435	Poecilia_reticulata
ENSMUSG00000004356	Utp20	94	84.211	ENSPPYG00000004871	UTP20	100	85.825	Pongo_abelii
ENSMUSG00000004356	Utp20	93	84.733	ENSPCAG00000012791	UTP20	85	91.919	Procavia_capensis
ENSMUSG00000004356	Utp20	99	85.561	ENSPCOG00000024948	UTP20	100	85.561	Propithecus_coquereli
ENSMUSG00000004356	Utp20	100	83.841	ENSPVAG00000008113	UTP20	100	83.626	Pteropus_vampyrus
ENSMUSG00000004356	Utp20	100	55.347	ENSPNYG00000011561	utp20	99	55.454	Pundamilia_nyererei
ENSMUSG00000004356	Utp20	100	55.953	ENSPNAG00000006176	utp20	99	56.414	Pygocentrus_nattereri
ENSMUSG00000004356	Utp20	100	94.442	ENSRNOG00000005823	Utp20	100	94.263	Rattus_norvegicus
ENSMUSG00000004356	Utp20	100	83.906	ENSRBIG00000025384	UTP20	100	84.049	Rhinopithecus_bieti
ENSMUSG00000004356	Utp20	100	85.597	ENSRROG00000041254	UTP20	100	85.740	Rhinopithecus_roxellana
ENSMUSG00000004356	Utp20	100	85.474	ENSSBOG00000035762	UTP20	100	85.403	Saimiri_boliviensis_boliviensis
ENSMUSG00000004356	Utp20	98	69.361	ENSSHAG00000002298	UTP20	99	69.361	Sarcophilus_harrisii
ENSMUSG00000004356	Utp20	100	58.559	ENSSFOG00015001674	utp20	100	58.631	Scleropages_formosus
ENSMUSG00000004356	Utp20	98	52.346	ENSSMAG00000016460	utp20	99	52.956	Scophthalmus_maximus
ENSMUSG00000004356	Utp20	100	56.633	ENSSDUG00000013730	utp20	99	56.542	Seriola_dumerili
ENSMUSG00000004356	Utp20	100	56.416	ENSSLDG00000012844	utp20	99	56.391	Seriola_lalandi_dorsalis
ENSMUSG00000004356	Utp20	62	96.296	ENSSARG00000002796	-	60	96.296	Sorex_araneus
ENSMUSG00000004356	Utp20	99	67.048	ENSSPUG00000004513	UTP20	99	67.048	Sphenodon_punctatus
ENSMUSG00000004356	Utp20	100	56.246	ENSSPAG00000014674	utp20	99	56.279	Stegastes_partitus
ENSMUSG00000004356	Utp20	100	85.740	ENSSSCG00000000869	UTP20	100	85.489	Sus_scrofa
ENSMUSG00000004356	Utp20	93	70.896	ENSTGUG00000009053	-	100	67.786	Taeniopygia_guttata
ENSMUSG00000004356	Utp20	99	55.567	ENSTRUG00000005849	utp20	99	55.709	Takifugu_rubripes
ENSMUSG00000004356	Utp20	100	53.900	ENSTNIG00000006921	utp20	100	54.047	Tetraodon_nigroviridis
ENSMUSG00000004356	Utp20	94	88.636	ENSTBEG00000011917	UTP20	92	79.926	Tupaia_belangeri
ENSMUSG00000004356	Utp20	97	85.287	ENSTTRG00000017195	UTP20	98	85.287	Tursiops_truncatus
ENSMUSG00000004356	Utp20	100	85.970	ENSUAMG00000016363	UTP20	100	85.791	Ursus_americanus
ENSMUSG00000004356	Utp20	100	85.254	ENSUMAG00000000077	UTP20	100	85.075	Ursus_maritimus
ENSMUSG00000004356	Utp20	94	82.576	ENSVPAG00000011620	UTP20	92	85.459	Vicugna_pacos
ENSMUSG00000004356	Utp20	100	85.156	ENSVVUG00000018110	UTP20	100	84.869	Vulpes_vulpes
ENSMUSG00000004356	Utp20	98	62.078	ENSXETG00000032346	UTP20	100	62.150	Xenopus_tropicalis
ENSMUSG00000004356	Utp20	98	52.812	ENSXMAG00000006503	utp20	99	53.217	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component