EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000004393 (Gene tree)
Gene ID: 52513
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 8854 bases
Position: chr11:6258919-6267772
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000004507	ResIII	PF04851.15	1.2e-06	1	1
ENSMUSP00000004507	DEAD	PF00270.29	8.9e-40	1	1
ENSMUSP00000122368	DEAD	PF00270.29	7.5e-33	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139073	-	527	-	-	- (aa)	-	-
ENSMUST00000151446	-	764	-	ENSMUSP00000122368	237 (aa)	-	Q5SVX2
ENSMUST00000004507	-	1956	XM_011243731	ENSMUSP00000004507	546 (aa)	XP_011242033	Q9D0R4
ENSMUST00000155874	-	621	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000004393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000004393's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000004393	Ddx56	82	50.000	ENSMUSG00000037149	Ddx1	53	50.847
ENSMUSG00000004393	Ddx56	61	32.051	ENSMUSG00000005481	Ddx39	74	34.969
ENSMUSG00000004393	Ddx56	66	30.789	ENSMUSG00000039224	D1Pas1	52	30.159
ENSMUSG00000004393	Ddx56	97	30.041	ENSMUSG00000059796	Eif4a1	87	30.051
ENSMUSG00000004393	Ddx56	97	30.453	ENSMUSG00000022884	Eif4a2	70	31.004
ENSMUSG00000004393	Ddx56	74	46.875	ENSMUSG00000041645	Ddx24	51	46.875
ENSMUSG00000004393	Ddx56	80	33.493	ENSMUSG00000020677	Ddx52	61	30.597
ENSMUSG00000004393	Ddx56	95	31.855	ENSMUSG00000033658	Ddx19b	73	30.151
ENSMUSG00000004393	Ddx56	98	33.065	ENSMUSG00000017999	Ddx27	53	31.019
ENSMUSG00000004393	Ddx56	83	33.981	ENSMUSG00000032097	Ddx6	74	30.025
ENSMUSG00000004393	Ddx56	66	30.366	ENSMUSG00000000787	Ddx3x	52	30.000
ENSMUSG00000004393	Ddx56	92	30.172	ENSMUSG00000094973	Gm8994	77	30.137
ENSMUSG00000004393	Ddx56	95	31.855	ENSMUSG00000015023	Ddx19a	73	30.175
ENSMUSG00000004393	Ddx56	99	35.887	ENSMUSG00000030204	Ddx47	86	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000004393	Ddx56	100	90.859	ENSG00000136271	DDX56	100	93.514	Homo_sapiens
ENSMUSG00000004393	Ddx56	98	67.339	ENSAPOG00000017113	ddx56	98	63.357	Acanthochromis_polyacanthus
ENSMUSG00000004393	Ddx56	100	86.996	ENSAMEG00000017711	DDX56	100	86.996	Ailuropoda_melanoleuca
ENSMUSG00000004393	Ddx56	92	58.546	ENSACIG00000013747	ddx56	98	67.403	Amphilophus_citrinellus
ENSMUSG00000004393	Ddx56	96	66.393	ENSAOCG00000018059	ddx56	93	65.800	Amphiprion_ocellaris
ENSMUSG00000004393	Ddx56	96	66.393	ENSAOCG00000015447	-	87	65.708	Amphiprion_ocellaris
ENSMUSG00000004393	Ddx56	96	66.393	ENSAPEG00000007267	ddx56	99	63.082	Amphiprion_percula
ENSMUSG00000004393	Ddx56	98	66.935	ENSATEG00000005279	ddx56	98	63.884	Anabas_testudineus
ENSMUSG00000004393	Ddx56	98	67.068	ENSACLG00000020113	ddx56	98	64.557	Astatotilapia_calliptera
ENSMUSG00000004393	Ddx56	97	64.516	ENSAMXG00000019357	ddx56	99	59.857	Astyanax_mexicanus
ENSMUSG00000004393	Ddx56	100	89.560	ENSBTAG00000010602	DDX56	100	89.560	Bos_taurus
ENSMUSG00000004393	Ddx56	96	40.721	WBGene00016073	C24H12.4	86	40.721	Caenorhabditis_elegans
ENSMUSG00000004393	Ddx56	100	90.311	ENSCJAG00000012233	DDX56	100	90.311	Callithrix_jacchus
ENSMUSG00000004393	Ddx56	82	85.650	ENSCAFG00000029295	DDX56	100	85.650	Canis_familiaris
ENSMUSG00000004393	Ddx56	100	83.516	ENSCAFG00020019695	DDX56	100	83.516	Canis_lupus_dingo
ENSMUSG00000004393	Ddx56	100	89.560	ENSCHIG00000014261	DDX56	100	89.560	Capra_hircus
ENSMUSG00000004393	Ddx56	100	89.397	ENSTSYG00000008048	DDX56	100	89.945	Carlito_syrichta
ENSMUSG00000004393	Ddx56	86	87.315	ENSCAPG00000006286	DDX56	100	87.315	Cavia_aperea
ENSMUSG00000004393	Ddx56	100	87.751	ENSCPOG00000003359	DDX56	100	87.751	Cavia_porcellus
ENSMUSG00000004393	Ddx56	100	89.762	ENSCCAG00000025303	DDX56	100	90.311	Cebus_capucinus
ENSMUSG00000004393	Ddx56	100	90.659	ENSCATG00000039389	DDX56	100	90.659	Cercocebus_atys
ENSMUSG00000004393	Ddx56	100	89.377	ENSCLAG00000007666	DDX56	100	89.377	Chinchilla_lanigera
ENSMUSG00000004393	Ddx56	100	90.676	ENSCSAG00000015636	DDX56	100	90.676	Chlorocebus_sabaeus
ENSMUSG00000004393	Ddx56	98	68.364	ENSCPBG00000024556	DDX56	98	68.364	Chrysemys_picta_bellii
ENSMUSG00000004393	Ddx56	98	54.941	ENSCING00000005185	-	98	55.773	Ciona_intestinalis
ENSMUSG00000004393	Ddx56	99	54.878	ENSCSAVG00000011266	-	99	54.348	Ciona_savignyi
ENSMUSG00000004393	Ddx56	100	90.494	ENSCANG00000028187	DDX56	100	90.494	Colobus_angolensis_palliatus
ENSMUSG00000004393	Ddx56	100	93.407	ENSCGRG00001019019	Ddx56	100	93.407	Cricetulus_griseus_chok1gshd
ENSMUSG00000004393	Ddx56	100	93.407	ENSCGRG00000011870	Ddx56	100	93.407	Cricetulus_griseus_crigri
ENSMUSG00000004393	Ddx56	98	67.742	ENSCSEG00000008368	ddx56	99	63.262	Cynoglossus_semilaevis
ENSMUSG00000004393	Ddx56	98	68.548	ENSCVAG00000006499	ddx56	99	64.195	Cyprinodon_variegatus
ENSMUSG00000004393	Ddx56	99	64.542	ENSDARG00000020913	ddx56	99	63.148	Danio_rerio
ENSMUSG00000004393	Ddx56	86	86.441	ENSDNOG00000036526	DDX56	99	86.441	Dasypus_novemcinctus
ENSMUSG00000004393	Ddx56	70	85.870	ENSDORG00000026173	-	100	94.595	Dipodomys_ordii
ENSMUSG00000004393	Ddx56	98	47.200	FBgn0001565	Hlc	94	48.037	Drosophila_melanogaster
ENSMUSG00000004393	Ddx56	94	72.614	ENSETEG00000002969	-	83	78.325	Echinops_telfairi
ENSMUSG00000004393	Ddx56	87	59.579	ENSETEG00000019559	-	100	58.737	Echinops_telfairi
ENSMUSG00000004393	Ddx56	100	58.893	ENSEBUG00000009986	ddx56	99	58.559	Eptatretus_burgeri
ENSMUSG00000004393	Ddx56	100	89.377	ENSEASG00005017795	DDX56	100	89.377	Equus_asinus_asinus
ENSMUSG00000004393	Ddx56	100	89.194	ENSECAG00000019897	DDX56	100	89.194	Equus_caballus
ENSMUSG00000004393	Ddx56	86	87.712	ENSEEUG00000004849	DDX56	100	87.712	Erinaceus_europaeus
ENSMUSG00000004393	Ddx56	97	67.480	ENSELUG00000004150	ddx56	97	65.867	Esox_lucius
ENSMUSG00000004393	Ddx56	99	86.789	ENSFCAG00000010261	DDX56	99	86.972	Felis_catus
ENSMUSG00000004393	Ddx56	100	88.645	ENSFDAG00000007128	DDX56	100	88.645	Fukomys_damarensis
ENSMUSG00000004393	Ddx56	97	68.699	ENSFHEG00000018008	ddx56	95	67.273	Fundulus_heteroclitus
ENSMUSG00000004393	Ddx56	98	67.742	ENSGAFG00000006906	ddx56	98	61.029	Gambusia_affinis
ENSMUSG00000004393	Ddx56	94	71.401	ENSGAGG00000006789	DDX56	91	71.401	Gopherus_agassizii
ENSMUSG00000004393	Ddx56	100	90.859	ENSGGOG00000012031	DDX56	100	90.859	Gorilla_gorilla
ENSMUSG00000004393	Ddx56	98	67.068	ENSHBUG00000015246	ddx56	93	62.115	Haplochromis_burtoni
ENSMUSG00000004393	Ddx56	100	89.560	ENSHGLG00000017271	DDX56	100	89.560	Heterocephalus_glaber_female
ENSMUSG00000004393	Ddx56	100	89.560	ENSHGLG00100015731	DDX56	100	89.560	Heterocephalus_glaber_male
ENSMUSG00000004393	Ddx56	98	67.339	ENSHCOG00000001685	ddx56	97	63.333	Hippocampus_comes
ENSMUSG00000004393	Ddx56	99	64.542	ENSIPUG00000006602	ddx56	98	61.388	Ictalurus_punctatus
ENSMUSG00000004393	Ddx56	100	89.194	ENSSTOG00000000464	DDX56	100	89.194	Ictidomys_tridecemlineatus
ENSMUSG00000004393	Ddx56	99	90.590	ENSJJAG00000014269	Ddx56	100	90.590	Jaculus_jaculus
ENSMUSG00000004393	Ddx56	97	67.886	ENSKMAG00000016611	ddx56	98	63.423	Kryptolebias_marmoratus
ENSMUSG00000004393	Ddx56	96	67.213	ENSLBEG00000026281	ddx56	98	62.664	Labrus_bergylta
ENSMUSG00000004393	Ddx56	97	66.298	ENSLACG00000015551	DDX56	97	66.667	Latimeria_chalumnae
ENSMUSG00000004393	Ddx56	97	68.826	ENSLOCG00000015185	ddx56	99	63.458	Lepisosteus_oculatus
ENSMUSG00000004393	Ddx56	99	88.192	ENSLAFG00000018206	DDX56	99	88.192	Loxodonta_africana
ENSMUSG00000004393	Ddx56	100	90.842	ENSMFAG00000041001	DDX56	100	90.842	Macaca_fascicularis
ENSMUSG00000004393	Ddx56	100	90.659	ENSMMUG00000002645	DDX56	100	90.659	Macaca_mulatta
ENSMUSG00000004393	Ddx56	100	91.026	ENSMNEG00000028492	DDX56	100	91.026	Macaca_nemestrina
ENSMUSG00000004393	Ddx56	100	90.659	ENSMLEG00000043591	DDX56	100	90.659	Mandrillus_leucophaeus
ENSMUSG00000004393	Ddx56	96	68.033	ENSMAMG00000007776	ddx56	98	64.845	Mastacembelus_armatus
ENSMUSG00000004393	Ddx56	98	67.068	ENSMZEG00005009813	ddx56	98	64.557	Maylandia_zebra
ENSMUSG00000004393	Ddx56	100	90.859	ENSMICG00000005550	DDX56	100	90.859	Microcebus_murinus
ENSMUSG00000004393	Ddx56	100	93.956	ENSMOCG00000016782	Ddx56	100	93.956	Microtus_ochrogaster
ENSMUSG00000004393	Ddx56	97	67.073	ENSMMOG00000009654	ddx56	96	65.759	Mola_mola
ENSMUSG00000004393	Ddx56	100	74.503	ENSMODG00000016137	DDX56	100	74.503	Monodelphis_domestica
ENSMUSG00000004393	Ddx56	98	66.932	ENSMALG00000016910	ddx56	99	63.807	Monopterus_albus
ENSMUSG00000004393	Ddx56	100	99.156	MGP_CAROLIEiJ_G0016069	Ddx56	100	99.156	Mus_caroli
ENSMUSG00000004393	Ddx56	100	97.253	MGP_PahariEiJ_G0016822	Ddx56	100	97.881	Mus_pahari
ENSMUSG00000004393	Ddx56	100	100.000	MGP_SPRETEiJ_G0016911	Ddx56	100	100.000	Mus_spretus
ENSMUSG00000004393	Ddx56	100	86.081	ENSMPUG00000018196	DDX56	88	86.081	Mustela_putorius_furo
ENSMUSG00000004393	Ddx56	100	89.927	ENSMLUG00000003509	DDX56	100	90.110	Myotis_lucifugus
ENSMUSG00000004393	Ddx56	100	90.842	ENSNGAG00000018785	Ddx56	100	90.842	Nannospalax_galili
ENSMUSG00000004393	Ddx56	98	67.068	ENSNBRG00000002656	ddx56	93	63.548	Neolamprologus_brichardi
ENSMUSG00000004393	Ddx56	100	91.225	ENSNLEG00000003816	DDX56	100	91.225	Nomascus_leucogenys
ENSMUSG00000004393	Ddx56	96	79.592	ENSMEUG00000006788	DDX56	100	76.613	Notamacropus_eugenii
ENSMUSG00000004393	Ddx56	100	88.117	ENSOPRG00000000292	-	100	88.117	Ochotona_princeps
ENSMUSG00000004393	Ddx56	96	86.939	ENSODEG00000014807	DDX56	100	92.000	Octodon_degus
ENSMUSG00000004393	Ddx56	98	67.068	ENSONIG00000011509	ddx56	98	65.672	Oreochromis_niloticus
ENSMUSG00000004393	Ddx56	88	80.973	ENSOANG00000006320	-	100	69.981	Ornithorhynchus_anatinus
ENSMUSG00000004393	Ddx56	95	67.490	ENSOANG00000015987	-	95	69.608	Ornithorhynchus_anatinus
ENSMUSG00000004393	Ddx56	100	87.751	ENSOCUG00000022918	DDX56	100	88.483	Oryctolagus_cuniculus
ENSMUSG00000004393	Ddx56	98	66.935	ENSORLG00000001434	ddx56	99	64.337	Oryzias_latipes
ENSMUSG00000004393	Ddx56	98	66.935	ENSORLG00020015718	ddx56	95	64.738	Oryzias_latipes_hni
ENSMUSG00000004393	Ddx56	98	66.935	ENSORLG00015003004	ddx56	95	64.557	Oryzias_latipes_hsok
ENSMUSG00000004393	Ddx56	98	66.935	ENSOMEG00000022072	ddx56	98	64.973	Oryzias_melastigma
ENSMUSG00000004393	Ddx56	100	89.397	ENSOGAG00000009981	DDX56	100	89.397	Otolemur_garnettii
ENSMUSG00000004393	Ddx56	100	89.744	ENSOARG00000015240	DDX56	100	89.744	Ovis_aries
ENSMUSG00000004393	Ddx56	100	86.871	ENSPPAG00000029147	DDX56	100	86.871	Pan_paniscus
ENSMUSG00000004393	Ddx56	100	73.406	ENSPPAG00000031263	-	100	73.224	Pan_paniscus
ENSMUSG00000004393	Ddx56	99	85.714	ENSPPRG00000014594	DDX56	99	86.264	Panthera_pardus
ENSMUSG00000004393	Ddx56	86	84.501	ENSPTIG00000019500	DDX56	92	84.713	Panthera_tigris_altaica
ENSMUSG00000004393	Ddx56	100	90.494	ENSPTRG00000019147	DDX56	100	90.494	Pan_troglodytes
ENSMUSG00000004393	Ddx56	94	75.483	ENSPTRG00000052765	-	100	75.290	Pan_troglodytes
ENSMUSG00000004393	Ddx56	100	90.842	ENSPANG00000002446	DDX56	100	90.842	Papio_anubis
ENSMUSG00000004393	Ddx56	98	66.265	ENSPKIG00000018998	ddx56	98	64.855	Paramormyrops_kingsleyae
ENSMUSG00000004393	Ddx56	98	66.265	ENSPMGG00000017421	ddx56	96	66.023	Periophthalmus_magnuspinnatus
ENSMUSG00000004393	Ddx56	96	95.154	ENSPEMG00000018351	-	96	95.154	Peromyscus_maniculatus_bairdii
ENSMUSG00000004393	Ddx56	100	82.609	ENSPCIG00000009336	DDX56	100	82.609	Phascolarctos_cinereus
ENSMUSG00000004393	Ddx56	98	68.145	ENSPFOG00000018658	ddx56	99	63.291	Poecilia_formosa
ENSMUSG00000004393	Ddx56	98	68.145	ENSPLAG00000019208	ddx56	99	63.291	Poecilia_latipinna
ENSMUSG00000004393	Ddx56	98	68.145	ENSPMEG00000001775	ddx56	99	62.749	Poecilia_mexicana
ENSMUSG00000004393	Ddx56	98	67.742	ENSPREG00000015142	ddx56	99	63.472	Poecilia_reticulata
ENSMUSG00000004393	Ddx56	100	91.225	ENSPPYG00000017591	DDX56	100	91.225	Pongo_abelii
ENSMUSG00000004393	Ddx56	96	86.907	ENSPCAG00000011499	DDX56	100	86.907	Procavia_capensis
ENSMUSG00000004393	Ddx56	100	90.859	ENSPCOG00000024864	DDX56	100	90.859	Propithecus_coquereli
ENSMUSG00000004393	Ddx56	88	91.163	ENSPVAG00000000791	DDX56	88	91.163	Pteropus_vampyrus
ENSMUSG00000004393	Ddx56	98	66.667	ENSPNYG00000019212	ddx56	98	64.376	Pundamilia_nyererei
ENSMUSG00000004393	Ddx56	98	65.462	ENSPNAG00000025446	ddx56	99	63.011	Pygocentrus_nattereri
ENSMUSG00000004393	Ddx56	100	96.520	ENSRNOG00000004670	Ddx56	100	96.520	Rattus_norvegicus
ENSMUSG00000004393	Ddx56	100	90.676	ENSRBIG00000030140	DDX56	100	90.676	Rhinopithecus_bieti
ENSMUSG00000004393	Ddx56	100	90.311	ENSRROG00000044428	DDX56	100	90.311	Rhinopithecus_roxellana
ENSMUSG00000004393	Ddx56	97	42.440	YLR276C	-	98	42.612	Saccharomyces_cerevisiae
ENSMUSG00000004393	Ddx56	100	90.128	ENSSBOG00000034339	DDX56	100	90.128	Saimiri_boliviensis_boliviensis
ENSMUSG00000004393	Ddx56	86	82.664	ENSSHAG00000016615	DDX56	99	82.664	Sarcophilus_harrisii
ENSMUSG00000004393	Ddx56	98	65.693	ENSSFOG00015012795	ddx56	97	65.693	Scleropages_formosus
ENSMUSG00000004393	Ddx56	98	67.742	ENSSMAG00000011280	ddx56	99	64.057	Scophthalmus_maximus
ENSMUSG00000004393	Ddx56	98	67.742	ENSSDUG00000023597	ddx56	98	63.784	Seriola_dumerili
ENSMUSG00000004393	Ddx56	98	67.742	ENSSLDG00000018369	ddx56	98	63.784	Seriola_lalandi_dorsalis
ENSMUSG00000004393	Ddx56	75	86.819	ENSSARG00000014363	DDX56	79	85.596	Sorex_araneus
ENSMUSG00000004393	Ddx56	99	66.362	ENSSPUG00000000784	DDX56	96	66.362	Sphenodon_punctatus
ENSMUSG00000004393	Ddx56	98	66.532	ENSSPAG00000009392	ddx56	95	66.538	Stegastes_partitus
ENSMUSG00000004393	Ddx56	100	89.051	ENSSSCG00000016745	DDX56	100	89.051	Sus_scrofa
ENSMUSG00000004393	Ddx56	98	66.532	ENSTRUG00000018623	ddx56	99	62.983	Takifugu_rubripes
ENSMUSG00000004393	Ddx56	98	66.935	ENSTNIG00000013593	ddx56	98	62.075	Tetraodon_nigroviridis
ENSMUSG00000004393	Ddx56	100	88.462	ENSTBEG00000007119	DDX56	100	88.462	Tupaia_belangeri
ENSMUSG00000004393	Ddx56	86	88.347	ENSTTRG00000010552	DDX56	100	88.347	Tursiops_truncatus
ENSMUSG00000004393	Ddx56	100	87.363	ENSUAMG00000014194	DDX56	100	87.363	Ursus_americanus
ENSMUSG00000004393	Ddx56	100	87.363	ENSUMAG00000009666	DDX56	100	87.363	Ursus_maritimus
ENSMUSG00000004393	Ddx56	100	85.348	ENSVVUG00000011905	DDX56	100	85.348	Vulpes_vulpes
ENSMUSG00000004393	Ddx56	98	64.919	ENSXETG00000019000	ddx56	99	65.823	Xenopus_tropicalis
ENSMUSG00000004393	Ddx56	98	67.742	ENSXCOG00000017413	ddx56	98	62.454	Xiphophorus_couchianus
ENSMUSG00000004393	Ddx56	98	67.742	ENSXMAG00000018749	ddx56	99	62.681	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	2506639.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0010976	positive regulation of neuron projection development	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process