EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000004642 (Gene tree)
Gene ID: 20492
Gene Symbol: Slbp
Alias: -
Full Name: stem-loop binding protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 17623 bases
Position: chr5:33634952-33652574
Accession: 108402
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000144475	SLBP_RNA_bind	PF15247.6	3.4e-29	1	1
ENSMUSP00000075093	SLBP_RNA_bind	PF15247.6	4.4e-29	1	1
ENSMUSP00000098906	SLBP_RNA_bind	PF15247.6	5.2e-29	1	1
ENSMUSP00000062930	SLBP_RNA_bind	PF15247.6	5.5e-29	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000075670	-	1027	-	ENSMUSP00000075093	250 (aa)	-	Q3V2L1
ENSMUST00000143029	-	2922	-	-	- (aa)	-	-
ENSMUST00000146889	-	805	-	-	- (aa)	-	-
ENSMUST00000057551	-	1906	-	ENSMUSP00000062930	275 (aa)	-	P97440
ENSMUST00000151081	-	508	-	ENSMUSP00000121978	33 (aa)	-	D3Z1S0
ENSMUST00000139518	-	1191	-	ENSMUSP00000144475	219 (aa)	-	A0A0J9YV40
ENSMUST00000101354	-	1578	-	ENSMUSP00000098906	255 (aa)	-	Q8K2W7
ENSMUST00000126581	-	562	-	-	- (aa)	-	-
ENSMUST00000148153	-	1128	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000004642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000004642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000004642	Slbp	100	87.273	ENSG00000163950	SLBP	100	86.545	Homo_sapiens
ENSMUSG00000004642	Slbp	84	59.296	ENSAPOG00000004953	slbp	90	50.973	Acanthochromis_polyacanthus
ENSMUSG00000004642	Slbp	79	94.470	ENSAMEG00000016915	SLBP	100	94.470	Ailuropoda_melanoleuca
ENSMUSG00000004642	Slbp	85	58.209	ENSACIG00000022308	slbp	94	51.020	Amphilophus_citrinellus
ENSMUSG00000004642	Slbp	84	57.000	ENSAOCG00000024545	slbp	87	49.049	Amphiprion_ocellaris
ENSMUSG00000004642	Slbp	84	57.000	ENSAPEG00000017629	slbp	87	49.049	Amphiprion_percula
ENSMUSG00000004642	Slbp	84	59.500	ENSATEG00000016358	slbp	74	57.820	Anabas_testudineus
ENSMUSG00000004642	Slbp	79	75.455	ENSAPLG00000015989	-	100	79.545	Anas_platyrhynchos
ENSMUSG00000004642	Slbp	100	83.333	ENSANAG00000034769	SLBP	100	82.624	Aotus_nancymaae
ENSMUSG00000004642	Slbp	84	57.868	ENSACLG00000007036	-	78	51.613	Astatotilapia_calliptera
ENSMUSG00000004642	Slbp	84	66.321	ENSAMXG00000014527	slbp	77	63.507	Astyanax_mexicanus
ENSMUSG00000004642	Slbp	100	86.182	ENSBTAG00000001328	SLBP	100	86.182	Bos_taurus
ENSMUSG00000004642	Slbp	100	82.270	ENSCJAG00000001790	SLBP	100	82.270	Callithrix_jacchus
ENSMUSG00000004642	Slbp	100	88.364	ENSCAFG00000015016	SLBP	100	88.364	Canis_familiaris
ENSMUSG00000004642	Slbp	100	88.364	ENSCAFG00020012334	SLBP	100	88.364	Canis_lupus_dingo
ENSMUSG00000004642	Slbp	100	85.455	ENSCHIG00000019364	SLBP	100	85.455	Capra_hircus
ENSMUSG00000004642	Slbp	100	88.000	ENSTSYG00000000376	SLBP	100	86.909	Carlito_syrichta
ENSMUSG00000004642	Slbp	66	91.160	ENSCAPG00000016340	SLBP	100	91.160	Cavia_aperea
ENSMUSG00000004642	Slbp	100	86.738	ENSCPOG00000000031	SLBP	100	86.738	Cavia_porcellus
ENSMUSG00000004642	Slbp	67	84.762	ENSCCAG00000026134	SLBP	87	82.857	Cebus_capucinus
ENSMUSG00000004642	Slbp	100	87.273	ENSCATG00000029173	SLBP	100	86.545	Cercocebus_atys
ENSMUSG00000004642	Slbp	100	86.545	ENSCLAG00000008157	SLBP	100	86.545	Chinchilla_lanigera
ENSMUSG00000004642	Slbp	100	72.857	ENSCSAG00000015628	SLBP	100	72.857	Chlorocebus_sabaeus
ENSMUSG00000004642	Slbp	100	70.213	ENSCPBG00000000746	SLBP	100	72.340	Chrysemys_picta_bellii
ENSMUSG00000004642	Slbp	79	90.278	ENSCANG00000041008	SLBP	100	89.352	Colobus_angolensis_palliatus
ENSMUSG00000004642	Slbp	100	95.636	ENSCGRG00001009760	-	100	95.636	Cricetulus_griseus_chok1gshd
ENSMUSG00000004642	Slbp	100	92.364	ENSCGRG00001012991	-	100	92.364	Cricetulus_griseus_chok1gshd
ENSMUSG00000004642	Slbp	100	95.636	ENSCGRG00000004506	Slbp	100	95.636	Cricetulus_griseus_crigri
ENSMUSG00000004642	Slbp	84	60.622	ENSCSEG00000020337	-	78	56.364	Cynoglossus_semilaevis
ENSMUSG00000004642	Slbp	81	58.511	ENSCVAG00000019592	-	76	55.610	Cyprinodon_variegatus
ENSMUSG00000004642	Slbp	89	62.376	ENSDARG00000100558	slbp	68	62.857	Danio_rerio
ENSMUSG00000004642	Slbp	100	78.445	ENSDNOG00000047539	SLBP	100	78.445	Dasypus_novemcinctus
ENSMUSG00000004642	Slbp	79	92.593	ENSDORG00000003028	Slbp	100	92.593	Dipodomys_ordii
ENSMUSG00000004642	Slbp	96	80.751	ENSETEG00000004641	SLBP	99	80.753	Echinops_telfairi
ENSMUSG00000004642	Slbp	70	94.271	ENSEASG00005022714	SLBP	100	94.271	Equus_asinus_asinus
ENSMUSG00000004642	Slbp	99	88.532	ENSECAG00000011689	SLBP	71	88.532	Equus_caballus
ENSMUSG00000004642	Slbp	86	58.209	ENSELUG00000012854	slbp	91	49.412	Esox_lucius
ENSMUSG00000004642	Slbp	100	89.818	ENSFCAG00000000169	SLBP	100	89.818	Felis_catus
ENSMUSG00000004642	Slbp	100	69.395	ENSFALG00000010003	-	100	69.039	Ficedula_albicollis
ENSMUSG00000004642	Slbp	92	90.514	ENSFDAG00000007592	SLBP	99	90.514	Fukomys_damarensis
ENSMUSG00000004642	Slbp	82	58.511	ENSFHEG00000007497	slbp	77	51.442	Fundulus_heteroclitus
ENSMUSG00000004642	Slbp	66	71.333	ENSGMOG00000015352	slbp	96	71.333	Gadus_morhua
ENSMUSG00000004642	Slbp	100	69.039	ENSGALG00000015712	SLBP	100	71.174	Gallus_gallus
ENSMUSG00000004642	Slbp	83	60.847	ENSGAFG00000019577	slbp	80	55.924	Gambusia_affinis
ENSMUSG00000004642	Slbp	84	57.653	ENSGACG00000019596	slbp	82	56.158	Gasterosteus_aculeatus
ENSMUSG00000004642	Slbp	96	68.981	ENSGAGG00000012096	SLBP	91	72.687	Gopherus_agassizii
ENSMUSG00000004642	Slbp	100	87.273	ENSGGOG00000003167	SLBP	100	86.545	Gorilla_gorilla
ENSMUSG00000004642	Slbp	84	57.000	ENSHBUG00000003338	-	78	51.613	Haplochromis_burtoni
ENSMUSG00000004642	Slbp	84	84.932	ENSHGLG00000010461	-	96	84.914	Heterocephalus_glaber_female
ENSMUSG00000004642	Slbp	89	85.965	ENSHGLG00000008313	-	100	82.353	Heterocephalus_glaber_female
ENSMUSG00000004642	Slbp	100	77.255	ENSHGLG00000005955	-	100	77.255	Heterocephalus_glaber_female
ENSMUSG00000004642	Slbp	84	84.932	ENSHGLG00100014906	-	96	84.914	Heterocephalus_glaber_male
ENSMUSG00000004642	Slbp	100	88.727	ENSHGLG00100014018	-	100	88.727	Heterocephalus_glaber_male
ENSMUSG00000004642	Slbp	89	86.842	ENSHGLG00100010510	-	100	83.137	Heterocephalus_glaber_male
ENSMUSG00000004642	Slbp	86	58.163	ENSHCOG00000013425	slbp	90	50.403	Hippocampus_comes
ENSMUSG00000004642	Slbp	84	67.368	ENSIPUG00000016780	slbp	74	67.172	Ictalurus_punctatus
ENSMUSG00000004642	Slbp	100	92.000	ENSSTOG00000003262	SLBP	100	92.000	Ictidomys_tridecemlineatus
ENSMUSG00000004642	Slbp	100	90.909	ENSJJAG00000002394	-	100	90.909	Jaculus_jaculus
ENSMUSG00000004642	Slbp	100	92.000	ENSJJAG00000020549	-	100	92.000	Jaculus_jaculus
ENSMUSG00000004642	Slbp	83	58.031	ENSKMAG00000008187	slbp	77	53.670	Kryptolebias_marmoratus
ENSMUSG00000004642	Slbp	83	60.104	ENSLBEG00000024709	slbp	76	53.333	Labrus_bergylta
ENSMUSG00000004642	Slbp	94	58.447	ENSLACG00000014623	SLBP	97	56.089	Latimeria_chalumnae
ENSMUSG00000004642	Slbp	86	60.199	ENSLOCG00000011027	slbp	93	52.518	Lepisosteus_oculatus
ENSMUSG00000004642	Slbp	95	84.541	ENSLAFG00000012933	SLBP	99	85.837	Loxodonta_africana
ENSMUSG00000004642	Slbp	91	88.048	ENSMFAG00000030130	SLBP	95	74.319	Macaca_fascicularis
ENSMUSG00000004642	Slbp	93	85.496	ENSMMUG00000032303	SLBP	96	89.862	Macaca_mulatta
ENSMUSG00000004642	Slbp	100	68.085	ENSMNEG00000008082	SLBP	100	67.376	Macaca_nemestrina
ENSMUSG00000004642	Slbp	93	80.000	ENSMLEG00000024639	SLBP	98	79.216	Mandrillus_leucophaeus
ENSMUSG00000004642	Slbp	84	54.726	ENSMAMG00000001046	-	90	47.656	Mastacembelus_armatus
ENSMUSG00000004642	Slbp	84	57.000	ENSMZEG00005017261	-	78	51.613	Maylandia_zebra
ENSMUSG00000004642	Slbp	79	76.498	ENSMGAG00000013085	SLBP	100	78.341	Meleagris_gallopavo
ENSMUSG00000004642	Slbp	100	95.636	ENSMAUG00000009490	Slbp	100	95.636	Mesocricetus_auratus
ENSMUSG00000004642	Slbp	100	86.909	ENSMICG00000014244	SLBP	100	85.818	Microcebus_murinus
ENSMUSG00000004642	Slbp	100	95.273	ENSMOCG00000015826	Slbp	100	95.794	Microtus_ochrogaster
ENSMUSG00000004642	Slbp	89	55.721	ENSMMOG00000010181	slbp	93	50.424	Mola_mola
ENSMUSG00000004642	Slbp	93	81.226	ENSMODG00000004304	SLBP	100	81.226	Monodelphis_domestica
ENSMUSG00000004642	Slbp	81	57.732	ENSMALG00000013883	-	56	54.167	Monopterus_albus
ENSMUSG00000004642	Slbp	100	99.636	MGP_CAROLIEiJ_G0027117	Slbp	100	99.636	Mus_caroli
ENSMUSG00000004642	Slbp	100	100.000	MGP_PahariEiJ_G0016901	Slbp	100	100.000	Mus_pahari
ENSMUSG00000004642	Slbp	100	100.000	MGP_SPRETEiJ_G0028113	Slbp	100	100.000	Mus_spretus
ENSMUSG00000004642	Slbp	67	92.391	ENSMPUG00000011139	SLBP	94	92.391	Mustela_putorius_furo
ENSMUSG00000004642	Slbp	79	88.073	ENSMLUG00000004425	SLBP	93	88.073	Myotis_lucifugus
ENSMUSG00000004642	Slbp	100	90.182	ENSNGAG00000020799	Slbp	100	90.182	Nannospalax_galili
ENSMUSG00000004642	Slbp	89	55.502	ENSNBRG00000006044	-	87	52.174	Neolamprologus_brichardi
ENSMUSG00000004642	Slbp	100	85.106	ENSNLEG00000000048	SLBP	100	84.397	Nomascus_leucogenys
ENSMUSG00000004642	Slbp	71	87.640	ENSMEUG00000002501	SLBP	100	87.640	Notamacropus_eugenii
ENSMUSG00000004642	Slbp	100	86.545	ENSODEG00000012641	SLBP	100	86.545	Octodon_degus
ENSMUSG00000004642	Slbp	84	57.000	ENSONIG00000017469	-	78	51.613	Oreochromis_niloticus
ENSMUSG00000004642	Slbp	79	83.410	ENSOANG00000014243	SLBP	95	85.253	Ornithorhynchus_anatinus
ENSMUSG00000004642	Slbp	83	59.788	ENSORLG00000024887	-	88	48.739	Oryzias_latipes
ENSMUSG00000004642	Slbp	83	59.259	ENSORLG00020007798	slbp	89	48.319	Oryzias_latipes_hni
ENSMUSG00000004642	Slbp	83	59.259	ENSORLG00015016656	slbp	88	48.319	Oryzias_latipes_hsok
ENSMUSG00000004642	Slbp	89	56.158	ENSOMEG00000010818	slbp	90	48.980	Oryzias_melastigma
ENSMUSG00000004642	Slbp	100	86.909	ENSOGAG00000009750	SLBP	100	86.182	Otolemur_garnettii
ENSMUSG00000004642	Slbp	79	91.244	ENSOARG00000016090	SLBP	100	91.244	Ovis_aries
ENSMUSG00000004642	Slbp	100	86.909	ENSPPAG00000033300	SLBP	100	86.182	Pan_paniscus
ENSMUSG00000004642	Slbp	91	90.400	ENSPPRG00000016897	SLBP	100	90.400	Panthera_pardus
ENSMUSG00000004642	Slbp	70	94.271	ENSPTIG00000015057	SLBP	100	94.271	Panthera_tigris_altaica
ENSMUSG00000004642	Slbp	100	86.545	ENSPTRG00000015832	SLBP	100	85.818	Pan_troglodytes
ENSMUSG00000004642	Slbp	100	83.451	ENSPANG00000004932	SLBP	100	82.746	Papio_anubis
ENSMUSG00000004642	Slbp	86	61.026	ENSPKIG00000006183	slbp	93	52.206	Paramormyrops_kingsleyae
ENSMUSG00000004642	Slbp	85	56.410	ENSPMGG00000017684	-	95	57.292	Periophthalmus_magnuspinnatus
ENSMUSG00000004642	Slbp	100	96.000	ENSPEMG00000018369	Slbp	100	96.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000004642	Slbp	100	75.593	ENSPCIG00000013575	SLBP	86	75.593	Phascolarctos_cinereus
ENSMUSG00000004642	Slbp	83	60.317	ENSPFOG00000000462	slbp	76	55.924	Poecilia_formosa
ENSMUSG00000004642	Slbp	83	60.317	ENSPLAG00000008300	slbp	81	54.206	Poecilia_latipinna
ENSMUSG00000004642	Slbp	83	60.317	ENSPMEG00000020807	slbp	76	55.924	Poecilia_mexicana
ENSMUSG00000004642	Slbp	83	60.317	ENSPREG00000004561	slbp	76	55.924	Poecilia_reticulata
ENSMUSG00000004642	Slbp	100	87.636	ENSPPYG00000014529	SLBP	100	86.909	Pongo_abelii
ENSMUSG00000004642	Slbp	100	88.364	ENSPCOG00000017399	SLBP	100	87.273	Propithecus_coquereli
ENSMUSG00000004642	Slbp	100	81.455	ENSPVAG00000002807	SLBP	100	81.455	Pteropus_vampyrus
ENSMUSG00000004642	Slbp	84	57.000	ENSPNYG00000005451	-	78	51.613	Pundamilia_nyererei
ENSMUSG00000004642	Slbp	87	64.467	ENSPNAG00000018503	slbp	89	57.917	Pygocentrus_nattereri
ENSMUSG00000004642	Slbp	100	98.909	ENSRNOG00000037162	Slbp	100	98.909	Rattus_norvegicus
ENSMUSG00000004642	Slbp	100	87.273	ENSRBIG00000039159	SLBP	100	86.545	Rhinopithecus_bieti
ENSMUSG00000004642	Slbp	95	86.973	ENSRROG00000030081	SLBP	96	86.207	Rhinopithecus_roxellana
ENSMUSG00000004642	Slbp	70	89.583	ENSSBOG00000033897	SLBP	100	88.542	Saimiri_boliviensis_boliviensis
ENSMUSG00000004642	Slbp	100	75.251	ENSSHAG00000013939	SLBP	100	75.251	Sarcophilus_harrisii
ENSMUSG00000004642	Slbp	89	61.650	ENSSFOG00015019429	slbp	96	52.060	Scleropages_formosus
ENSMUSG00000004642	Slbp	86	53.555	ENSSMAG00000016028	-	82	50.213	Scophthalmus_maximus
ENSMUSG00000004642	Slbp	84	58.974	ENSSDUG00000000855	-	77	55.869	Seriola_dumerili
ENSMUSG00000004642	Slbp	63	53.691	ENSSLDG00000022893	-	86	54.795	Seriola_lalandi_dorsalis
ENSMUSG00000004642	Slbp	91	40.385	ENSSLDG00000007554	-	70	41.148	Seriola_lalandi_dorsalis
ENSMUSG00000004642	Slbp	96	68.939	ENSSPUG00000016007	SLBP	98	69.615	Sphenodon_punctatus
ENSMUSG00000004642	Slbp	84	59.091	ENSSPAG00000004021	slbp	82	57.477	Stegastes_partitus
ENSMUSG00000004642	Slbp	100	85.455	ENSSSCG00000008676	SLBP	100	85.455	Sus_scrofa
ENSMUSG00000004642	Slbp	93	70.115	ENSTGUG00000010626	-	100	72.031	Taeniopygia_guttata
ENSMUSG00000004642	Slbp	83	60.733	ENSTRUG00000000688	slbp	91	49.402	Takifugu_rubripes
ENSMUSG00000004642	Slbp	83	56.452	ENSTNIG00000000484	-	80	50.246	Tetraodon_nigroviridis
ENSMUSG00000004642	Slbp	68	96.078	ENSTBEG00000004085	SLBP	100	68.898	Tupaia_belangeri
ENSMUSG00000004642	Slbp	79	93.519	ENSTTRG00000010901	-	100	93.519	Tursiops_truncatus
ENSMUSG00000004642	Slbp	71	88.202	ENSTTRG00000004010	-	100	88.202	Tursiops_truncatus
ENSMUSG00000004642	Slbp	100	88.809	ENSUAMG00000012990	SLBP	100	88.809	Ursus_americanus
ENSMUSG00000004642	Slbp	70	93.229	ENSUMAG00000006119	SLBP	100	93.229	Ursus_maritimus
ENSMUSG00000004642	Slbp	100	87.636	ENSVVUG00000015578	-	100	87.636	Vulpes_vulpes
ENSMUSG00000004642	Slbp	89	61.000	ENSXETG00000003876	slbp	93	59.289	Xenopus_tropicalis
ENSMUSG00000004642	Slbp	83	60.209	ENSXCOG00000008275	slbp	81	55.869	Xiphophorus_couchianus
ENSMUSG00000004642	Slbp	83	60.317	ENSXMAG00000001331	-	75	55.924	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	15358832.	IDA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15358832.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	15358832.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	21873635.	IBA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	19470752.	IDA	Process
GO:0033260	nuclear DNA replication	-	ISO	Process
GO:0044770	cell cycle phase transition	-	ISO	Process
GO:0051028	mRNA transport	21873635.	IBA	Process
GO:0051028	mRNA transport	-	ISO	Process
GO:0071204	histone pre-mRNA 3'end processing complex	21873635.	IBA	Component
GO:0071204	histone pre-mRNA 3'end processing complex	19470752.	IDA	Component
GO:0071207	histone pre-mRNA stem-loop binding	21873635.	IBA	Function
GO:0071207	histone pre-mRNA stem-loop binding	19470752.	IDA	Function
GO:1990904	ribonucleoprotein complex	15358832.	IDA	Component